Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       ----------------->AGL1                                        ----------->HVH21                                       <-----------HVH21                                      <---------ANAC58                                      <---------ANAC46                                      <---------ANAC58                  --------->At4g35610                                      <---------ANAC55(2)      --------->ARR14(2)                   -                                      --------->ANAC55(2)    --------->LBD16                      <--            ------>ZmHOX2a(2)         <---------ANAC55(1)  <---------LBD16           --------->HSFC1(1)      <---------O2                <----------DOF2   ------>ZmHOX2a(2)---------->DOF2 <---------HSFB2a(2)      --------->O2        ------->GAMYB--------->LBD16 XXXXXXXXXXXXXXXXXXXX>MIR832-5P--------->HSFB2a(2) --->ZmHOX2a(1)        --------->MYB52(1)  <---------bZIP60(2) <---------ARR14(2)    <---------HSFC1(1)   ctctcgcctcgtgatcccacttaaacaacgaaaaccctttccgtgacatggtgatcccaagaccggaaaccgaaagctcaaatttttcgagaaaatagac  5121400                                                                   <---------ANAC58                                     <---------ANAC46--------->WRKY12                               <                                    <---------TOE2(3)----------->HVH21                    ------->MYC3                                  ----------->HVH21 <---------MYB52(2)                    <-------MYC3                                  ----------->TGA1 --------->ZAT2  <---------ANAC58    <---------ALFIN1                                 --------->DEAR3(2)--------->At4g35610                 --------------                                <---------At4g35610----------->RAV1(2)                --------------- -------->LBD16                 --------->At4g35610<---------At4g35610         --------->ICU4      <- -------LBD16        --------->O2<---------MYB52(2)<---------ZAT2  <---------ANAC46 <-----------GT1--   tccggagaagacacaagaaggccacgagtttgggaactgacgtttaatctagcagctgacctcgaaattgcttgtttagcaatgtttctccacatgggga  5121500                                                                                                  ---                                                                --------->TOE2(3)                 --- ---------ARR14(2)                                              --------->TOE1(3)                 <-- ->AGL15                                                      <---------ARR11(3)           <---------ANAC58 -->AGL1                                                 ------>ZmHOX2a(2)                 <---------ANAC46 -----ZmHOX2a(1)            ---------->DOF2        <---------ANAC55(2)                     <---------ANAC58 ------->ATHB12       ----------->GT1              --------->ANAC55(2)                  --------->ALFIN1   aggattgggaaactgggtttggagaagaaataaagggtttatgcaatggaatcaagtgatcgaataccttagtctgatttgccaagaacagtggggtttg  5121600                                                                        --------->AHL20(2)                                                          ------>MYB83  <---------AHL20(2)                                                          ------>MYB46(1)          --------->WOX13(1)                              -------->P    <---------AHL20(1) ------>ZAT14                           ---------->DOF2 ------->GAMYB   --------->AHL20(1)  --------- ------>ZAT18                       ----------->GT1    --------->MYB46(3)        ------>ZmHOX2a(2)  - -------ZAT14               ----------->GT1       --------->YAB1       --------->AHL20(2) ---------->DOF2   agcactggacatcaatcgaacttaaaaattgagtaaaatcgataaaccagaacaataaccaactcgagattgaataaattcgatcgcatgagcaaagaaa  5121700                                                                        --------->RAP2.6(2)                                                                        --------->DEAR3(1)                                                                        --------->RAP2.3(3)                                                                        --------->RAP2.3(2)                                                                       --------->RAP2.3(1)                         --------->ANAC58                              --------->ATERF1(1)                         --------->ANAC58                      --------->ANAC46                         --------->ANAC46                 --------->ZAT18                         ------------------------>ANAC81  <---------ZAT18 <------NtERF2                        <---------LBD16                  <---------ANAC58<---------RAP2.6(3) -->GT1     ----------->ARR10                            <---------ANAC58------>NtERF2 ---------->GT1   <-------TEIL     --------->AHL20(2)<---------ZAT14  <---------ATERF1(1)   aatggcaaattgggaagagtttcatagacggaagaaaataaaaacaaatggtgagtgaagcgtacacgacgaagccgccttaaaccctcgcttaaaaacc  5121800                                                                                    -------->P                                                                                <---------ARR11(3)                                                                                <-----------ARR10                                                                                --------->ARR11(3)                                                                         --------->AHL20(2)                                                                     --------->AHL20(2)                                                                     <---------AHL20(2)                                                        ------------>CBF <---------AHL20(2)                               <-------GAMYB       <-----------HVH21 <---------AHL20(1)                               <---------ANAC58 --------->TGA1a      --------->AHL20(1)                               ===========================MYC_MYB   <---------AHL20(2)                <------------------------ANAC81 <---------TGA1a     --------->AHL20(2)--------->TOE2(3)  <----------DOF2              <---------ANAC58 =============================================MYC_MYB <---------ANAC58          <---------LBD16      <---------O2 --------->YAB1    --------->CCA1(1)    - <---------ANAC58<---------MYB52(1)        *TSS --------->O2 --------->AHL20(2)--------->RVE1(1)   <-   cttgctttcttaagcctctgttttttttttctgggttgtctctgtttctcacatgtcaaacaattaaaaaataaattaaaaatatctaccctaaattcga  5121900                        --------->LBD16                      <---------LBD16                  ----------->HVH21                 --------->MYB46(3)                ----------------->AGL1                <-----------------AGL1              <-----------GT1            ------>ZmHOX2a(2)           <------ZmHOX2a(2)          --------->ARR11(3)          <---------ARR11(3)          --------->ARR14(2)          <---------ARR14(2)          <-----------ARR10          --------->GLK1(2)          --------->ARR14(3)   --------->ARR14(2)          <---------ARR14(3)   <---------ARR14(2)          ---------->DOF2         <------ZmHOX2a(1)   --------->HSFC1(2)       ------->GAMYB      =============HOX2a_HOX2a --------->GLK1(2)     --------->MYB46(3)                <---------WRKY18(1)      <------ZmHOX2a(1)<---------LBD16              --------->RAP2.6(3)               ----------->HVH21  --------->ARR14(2)<---------ARR14(2)             <---------ICU4              ---------->DOF2<------  <---------ARR14(2)--------->ARR14(2)             --------->MYB52(1)     --------->AtLEC2  ------->TEIL -------->LBD16-------->P    <---------HSFC1(2)    <-----------GT1   <-----------GT1<---------ANAC58 --------ANAC55(2)--------->ANAC46              --------->YAB1     <----------DOF2  <---------ANAC58   cccgtataggaggatcttacccgacccgggaagtatctgattaaggcctctaataacggcccaaagtctctttactatgcaaaaaggcttgacgaattta  5122000                    --------->AHL20(2)                    <---------AHL20(2)                  --------->AHL20(2)     --------->YAB1                                          ----                 <---------AHL20(1)     <---------YAB1                                          -----                 --------->AHL20(1)  <---------AHL20(2)       <-----------GT1             --------->ANAC58                --------->AHL20(2)   --------->AHL20(2)   <---------YAB1                  --------->ANAC58            <---------AHL20(2)       --------->AHL20(1)  <---------AHL20(2)             <---------PCF2         ----------->GT1            --------->AHL20(2)   <---------AHL20(1)   <---------DAG2    <---- ---AHL20(2)--------->AHL20(2)    ------->TEIL         <---------YAB1         <----------DOF2  <-----   tggagcccaattagttaaatatatatatacaaaatgaattttattatagtttcttctattatttttaccatttcatacaactttttagtggaacccaatt  5122100                                                         <---------ARR11(3)                                                         --------->ARR11(3)                                                         <---------GLK1(2)                                                  --------->AHL20(2)                                                 <---------AHL20(1)                                                 --------->AHL20(1)                                                 <---------AHL20(2)                                              --------->AHL20(2)                                              <---------AHL20(2)                                             --------->YAB1                                             --------->AHL20(2)                                   <--             --------->DAG2                  <---------AHL20(2)                                   <--    ----------->RAV1(1)                  --------->AHL20(2)                                       <--   --------->MYB46(3)--------->ANAC58    <---------AHL20(2)                                      ---- ----->WOX13(1)      --------->ANAC58   <---------AHL20(1)                                <---------AHL20(2) ---->AHL20(2)     <---------PCF2       --------->AHL20(1)             <--------ATHB1--------->AHL20(2) -----AHL20(2)  --------->ALFIN1        --------->AHL20(2)      <---------AtLEC2     <---------AHL20(2) ----ATHB12---------->DOF2 --------->YAB1<---------YAB1<---------TOE2(3)         <-------------------   aatcaacaacaaaaaaaggtggaacccaattacaatgccgaatataattaaaatatttagatttttgtatgaataattcacttggattttatttttttgg  5122200                           -------->HAHB4                           <---------AHL20(2)                           <---------ICU4                          <---------YAB1                          --------->ICU4                        <--------ATHB1                        -------->HAHB4                        --------->ATHB51                        <---------ICU4                        <--------HAHB4                                                              <                        --------->YAB1                            --------->ARR11(3)                <                       <---------YAB1              --------->AHL20(1)                               <                       --------->AHL20(2)          <---------AHL20(1)                             <--     <---------ARR11(3)<---------ATHB51            <---------AHL20(2)        --------------------->WRI1 -------WRKY45         --------->ICU4              --------->AHL20(2)       <---------ANAC58    ----- -------WRKY38(1)    --------->YAB1               --------->AHL20(2)        <---------ANAC58    ----- -------WRKY12       <---------ICU4               <---------AHL20(2)     <<<<<<<<<<GT-3b        <---- ----->WRKY18(1)  --------->YAB1       <---------YAB1             --------->GLK1(2)     <---------ETT(2) -----ANAC81  <---------ZAT6 <---------YAB1 ----------->GT1       <---------ARR11(3) --------->ALFIN1   tcaacaatatcaatttgtgttaataataattattctagtctattatttgtaaataaatttggactaaaaatctatttttcttgggatgtgtcgactagtg  5122300  Previous    Next  AGI:  At5g15700.1    Description:  DNA-directed RNA polymerase (RPOT2). Identical to DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor (RPOT2) [Arabidopsis Thaliana] (GB:Q9LFV6;GB:O23644); similar to PDE319/SCA3 (SCABRA 3), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G24120.2); similar to DNA-directed RNA polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana] (TAIR:AT1G68990.1); similar to PDE319/SCA3 (SCABRA 3), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G24120.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96891.1); similar to DNA-directed RNA polymerase 2, chloroplast/mitochondrial Range:  from: 5115303    to: 5121843    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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