Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->ANAC58                                                                           ---------->DOF2                                                                          <---------MYB52(1)                                                                         --------->TOE2(3)                                                                         --------->TOE1(3)       ----                                     <---------ICU4                     <---------ANAC55(2)     <----                                     -------->ATHB1                    <-------TEIL     --------->ARR14(2)                                     --------->ATHB51                --------->ARR14(2) <---------ARR14(2)                                     --------->ATHB12       --------->GLK1(2)--------->ANAC58  <-----                                    <---------YAB1 ---------->DOF2   <---------ARR14(2) <---------GLK1(2)                          --------->TOE2(3)    --------->YAB1 <---------AHL20(2)     --------->ANAC46   gagagtttgtaagagagaggctaatctacattagttctattattgccaagaatgaaagagagaatttatcaaatacgttaagcaaacacagaacctcgtt  5084300                                        --------->TOE2(3)                                       ----------->GT1                                     --------->CCA1(2)             --------->LBD16                                    <---------ARR11(3)            --------->HSFB2a(2)                                    --------->ARR11(3)     --------->AHL20(2)              ----------            --------->YAB1   <----------DOF2               <---------AHL20(2)   <---------HSFB2a(2)    <----------DOF2       --------->ARR11(3)              --------->AHL20(2) <---------AHL20(2) ----->MYB52(2)           <---------ARR11(3)            <----------DOF2     --------->AHL20(2) -----TOE1(2)          --------->AHL20(2)      <---------AHL20(2) <---------HSFB2a(2)     <------ZmHOX2a(1) ----MYB52(1)          <---------AHL20(2)      --------->AHL20(2)<---------LBD16--------->HSFB2a(2) <   tgttttctttacattgatgaactatataaatctttagagatatgttaatttaaatctccttttaatttctgggaacaattttatagaaaacaggaaagct  5084400                         --------->CCA1(2)                        --------->ARR11(3)                        --------->ARR14(2)                                 <---------ARR11(3)                        <---------ARR11(3)                            <----------DOF2           --------->At4g35610                                  <---------DAG2           <---------At4g35610                            <---------ZAT18  --------->ARR11(3)          --------->ANAC58        <-----------HVH21       --------->PCF2  <---------CCA1(2)<--------- >DOF2    --------->ANAC58 <---------YAB1  --------->WRKY38(1)  <----------DOF2     ------->GAMYB ------ZmHOX2a(1)       <---------ARR14(2) --------->WRKY12  <---------ALFIN1     -------->P  <------   taggaagatggtaagctaagttgggagatatgtttgtgtcagaagttgactcatggccagtccccactttttctttatatcttcaaccccaagttacttt  5084500                                                                                    --------->MYB52(2)                                                                                 <-----------HVH21                                                                                 <-----------TGA1                                                                                --------->O2                                                                                <---------O2<--------                                                                                <---------TGA1a                                                                                --------->TGA1a                             <---------ANAC58                                   --------->bZIP60(2)                      <---------TOE2(3)          <---------ARR11(3)             --------->ANAC55(2)                      <---------TOE1(3)      =============================================bZIP_DOF                 <---------ICU4            --------->MYB46(3)                   --------->ANAC55(1)                 --------->YAB1           ------>MYB83                          <---------ANAC55(2)                 -------->ATHB1           ------>MYB46(1)                       --------->ANAC58                 --------->ATHB12        ----------->RAV1(1)                    --------->ANAC58                 <--------HAHB4<---------MYB52(1)--------->ARR11(3)             --------->ANAC46 --GT1  <---------CCA1(2)    <---------ANAC58---------->DOF2           --------->SPL7       <-------- ----DOF2       <---------ATHB12   <----------DOF2        --------->ARR11(3)   <-----------STF1   ctcacttctcatctctgaatcattagggttttcgtttctttaccaacaaaagatagttgagatgttgtattcggacgagaacacgtcagtttctaaggtg  5084600                                                                                     ---------->DOF2                --------->YAB1                         <---------AHL20(1)        <------MYB46(1)                --------->TOE2(3)  --------->CCA1(2)   --------->AHL20(2)        <------MYB83          --------->YAB1      ---------->DOF2          <---------AHL20(2)       --------->MYB111(2)          <---------ICU4    <----------DOF2            --------->AHL20(1)       --------->MYB111(1)       --------->WOX13(1)  <---------ANAC46           --------->AHL20(2)        --------->MYB46(2)     <---------YAB1    <------------CBF         ---------->DOF2                <--------P   --------->YAB1     <---------ICU4     <----------ARF1                --------->MYB46(3) -TOE2(3) --------->ZAT6   <---------ANAC58   --------->ANAC58          --------->REM1(1) -TOE1(3)<---------ATHB12  <---------ANAC58   --------->ANAC58        ----------->RAV1(1)   ttctattatcaatcactaccataaacattgcttaaagttatgggaaacaagaaagaataaatttggagaatgcaacaacaagtaggtgaaagcccatctt  5084700                                                                                      ----------->RAV1(2)                                                                                  ---------->DOF2                                                                             >>>>>>>>>TBF1                                                                        ------>ZmHOX2a(1)  ----------                       ----------->GT1                                  --------->LBD16   <---------TOE2(3)                   --------->YAB1                                      --------------->AGL15       *TSS       <---------ATHB12                                     <---------------AGL15     ---------->DOF2--------->GLK1(2)                                 ----------------->AGL1        -   cagaccaaaaagactcatcaataatctgtaaaaaacttatgttttaaatcccataaacacatcaattcaaattcctgaagaagaaaaagcctgaggttaa  5084800      ------->PIF5      <-------PIF5                                                                         --------->ANAC46     <---------ZAT2                                                                       <---------LBD16     --------->ZAT2                                                                      <---------At5g28300     <---------At4g35610             ---------->DOF2                                  ===============     ----------->RAV1(2)     <----------DOF2                   <---------At4g35610    <----------DOF2    ------->TEIL            <---------ICU4                <---------GLK1(2)     --------->ARR11(3)   <---------ALFIN1       <---------ARR11(3)             --------->At4g35610    <---------ARR11(3)  --------->ZAT14         --------->ARR11(3)             <---------At4g35610   --------->YAB1  <---------ZAT14     ------>ZmHOX2a(1)            ------>ZmHOX2a(1)          --------->ICU4   ------  <---------ZAT18    --------->TOE1(3)            <---------ALFIN1            <---------YAB1--------- ->GT1--------->TOE1(2)  <---------CCA1(2)     --------->ARR14(2)       <<<<<<<<<TBF1<---------ICU4 -------->ANAC46     --------->TOE2(3)         <---------ARR14(2)    <<<<<<<<<TBF1  <---------YAB1   acactgcacctgggaatcaatttccttaaatctttactcaaaagatgaggctcctcttcagcttctgcttcttcttcttcatgatcatctttaccgcaag  5084900                                                                                                -----                                                                                               <-----                                                                                          ------>ZmHOX2a(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                        <---------ALFIN1                                         ==================HOX2a_HOX2a                      --------->ANAC58                               <---------ZAT2   ----------->ARR10                      --------->ANAC58                               --------->ZAT2 <---------MYB52(1)      <---------CCA1(2)--------->LBD16                               <---------At4g35610<---------ARR11(3)    ------>ZmHOX2a(1)<---------LBD16 <----------DOF2                 --------->At4g35610--------->ARR11(3) ====bZIP_DOF        <---------ATERF1(2)   <-----------GT1       <-----------GT1 ------>ZmHOX2a(2) --->TGA1a     <---------ICU4     <-----------GT1         <----------DOF2    <---------YAB1 ------>ZmHOX2a(1) >LBD16    <-------TEIL<------NtERF2 <---------DAG2    <-----------GT1   <---------ANAC46<------ZmHOX2a(2)   tgagtcctgtatattcatttttgcccgcacattaacttacttttcttactctctgattttctttttttcacagctgcttatgatccattagatcctagtg  5085000                                      --------->At4g35610                                      <---------At4g35610                                    <-----------RAV1(2)                                   <------NtERF2                                 --------->ANAC58                       <---------ANAC58                                 --------->ANAC46                       <---------ANAC46                                 --------->ANAC58              <---------ZAT18                                 <---------ATERF1(2)           --------->ZAT14                                 <---------DEAR3(1)            <---------ZAT14                                --------->RAP2.6(3)         --------->At4g35610                                --------->SPL7              ------>ZmHOX2a(1)           <---------ANAC58                             --------->HSFB2a(2)        --------->ARR14(2)            <---------YAB1          --------->YAB1     <---------HSFB2a(2)        --------->GLK1(2)          --------->ARR14(2) ------>GT1                  ------>ZmHOX2a(1)          <---------ARR14(2)         <---------ARR14(2) ----ZAT6<<<<<<<<<ARR2     <---------ANAC46      ----------->GT1        <---------ANAC58<---------ANAC58   gtaacattacaatcaaatgggatattatgtcctggacggcagatggctatgtggtaagaatcctctgcacttgtgcgtgagtgtatatatgcttgaaact  5085100                                                                          --------->LBD16                                                                         --------->ATERF1(2)                                                                         <---------ATERF1(2)                                                  --------->ICU4        <---------LBD16                                              --------->DOF5.7(2)      -------->P                                       --------->ANAC58                --------->MYB52(1)                                       --------->ANAC46            <---------ARR14(2)          <-----                                       --------->ANAC58            --------->ARR14(2)          <-----            <---------ICU4    <---------ZAT18 --------->At5g28300  <-----------ARR10         <-------         --------->YAB1    <---------ANAC46  ----------->GT1       <---------ARR11(1)      <---------MYB46(3)   ggcacaaactctcatcatctctatacattctgtgcatttgcaggctacggtaactatgaacaacttccaaatctaccggcacatacaaaaccctggttgg  5085200  Previous    Next  AGI:  At5g15630.1    Description:  COBL4/IRX6 (COBRA-LIKE4). Identical to COBRA-like protein 4 precursor (COBL4) [Arabidopsis Thaliana] (GB:Q9LFW3;GB:Q6ICX3); similar to COB (COBRA) [Arabidopsis thaliana] (TAIR:AT5G60920.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96834.1); similar to unknown [Populus trichocarpa] (GB:ABK96050.1); similar to phytochelatin synthetase-like protein [Phaseolus vulgaris] (GB:AAR13305.1); contains InterPro domain COBRA-like (InterPro:IPR017391); contains InterPro domain Phytochelatin synthetase-like conserved region (InterPro:IPR006918) Range:  from: 5084707    to: 5086795    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version