Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------ARR14(2)       --------->AtLEC2                  --------->ARR14(2)       ----------->RAV1(1)       --------->ANAC46            --------->HSFB2a(2)            <---------ALFIN1        --------->ANAC58  --------->ORA47(1)               --------->LBD16   <---------ZAT14                 --------->WOX13(1) --------->DEAR3(1)                <---------HSFB2a(2)        --------->ANAC58    <---------ARR14(2) ------>AtMYB61           ------>ZmHOX2a(1)<-------TEIL       --------->ANAC58    --------->ARR14(2) ----->MYB46(3) ------->GAMYB      ------>ZmHOX2a(1) --------->ZAT14  --------->GLK1(1)   --------->ANAC58   ccaccgtccatgaaacaacgctcttctcctctaactcctcgaaaatacgtttgacttcactcacaagcccacatttcccatacatatccatcaaggcatt  4983700                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                  --------->ANAC58                                                                                  <---------ALFIN1                                                                                  --------->ANAC58                                       ------->GAMYB                             <---------ZAT18                                     -------->P                           --------->ZAT2                                  <---------At4g35610                     <---------ZAT2        --------->ZAT6      <----------DOF2                           ------>ZmHOX2a(1)   --------->TOE1(3)       <---------ICU4                         --------->ARR14(2)  --------->ANAC55(1)   --------->TOE2(3)    <---------ALFIN1        ------>ZmHOX2a(1) <---------ARR14(2)<---------ALFIN1   acaaacctttacactagtcaaaacccccatctttacagcaaccccatgtccttgttgagcgaaacccaaatcctccagcttggcacacacgccaaacaaa  4983800                                                                    ------->GAMYB                                                       <-------TEIL--------->MYB46(3)                 --------->WOX13(1)                   <----------DOF2  --------->MYB46(3)          --               <---------YAB1                      <---------ARR11(3) ------>MYB46(1)        <------ZmHOX2a(1)              --------->TOE2(3)                    --------->ARR11(3) ------>MYB83      --------->DAG2          --------->YAB1    <----------DOF2   --------->ANAC46   <-----------GT1       ---------->DOF2   caaactacagaaacatcatcaatctctactcttttccttctcatttccacgaagagcttcatcgaattaaccaacaatccataccgagaaaaagaggata  4983900                                    <------ZmHOX2a(1)                              ---------->DOF2                            <---------------AGL15          --------->ANAC46  --------->HSFB2a(2)      --------->GLK1(2)              --------->YAB1   --------->ALFIN1         <---------HSFB2a(2)     <---------GLK1(2)           <------ZmHOX2a(1) -------->DOF2        <----------DOF2     <---------ANAC46              <-----------GT1   acaaagtggtccaatccacattgtctttttctgaaagaggaatttcgtcgaacagtttctgggcagtaaccatttcaccagaggaagcataaaactgaaa  4984000                         --------->At4g35610                         <---------At4g35610                         <XXXXXXXXXXXXXXXXXXXXMIR319A/B                      ----------->GT1                         <XXXXXXXXXXXXXXXXXXXXMIR159B                       <---------ANAC46                         <XXXXXXXXXXXXXXXXXXXXMIR319C                      --------->SPL7                         <XXXXXXXXXXXXXXXXXXXXMIR159C                    ----------->HVH21                   --------->TOE1(2)                                   <---------LBD16              <                  ----------->RAV1(2)                                  XXXXXXXXXXXXXXXXXXXX>MIR832-5P               ----------->HVH21                                       --------->LBD16          -----              <-------TEIL<XXXXXXXXXXXXXXXXXXXXMIR159A  <---------ANAC58 <------NtERF2         ------             --------->ARR14(1)                         <---------ANAC46------>NtERF2          ------             --------->CCA1(2)               ----------->GT1           --------->ETT(1)       -------            --------->ARR14(2)               <---------MYB46(3)       <---------ANAC46        <------            <---------ARR14(2)         --------->LBD16  <---------ANAC58--------->LBD16   <----------            --------->ARR11(1)        <---------HSFB2a(2)             <---------LBD16  <-------------          ----------->ARR10<----------DOF2  --------->ALFIN1      <---------ANAC58    --------->MYB52(1) --------->ZAT18  --------->ZAT2      --------->HSFB2a(2)         <---------ANAC58  <---------MYB52(2)   tagcgcattgctaagatacgacctgggagctttcttcaatccagaagtggttaaaacggcgtgcaattccttgccgggacggagaaacgaacggtgagcg  4984100     <------NtERF2   --------->ETT(1)   <---------ANAC46 <-----------HVH21 -----------RAV1(1) ---->ZAT18                       --------->ANAC58 --->ANAC58                  <------MYB46(1)                                                     <--- --->ANAC58 <----------ID1 <--------P                                                            <--- -->At4g35610       <---------DAG2--------->ANAC58                                  --------->TOE2(3) ---At4g35610       <----------DOF2 <---------ICU4                   ------>ZmHOX2a(1)           <--- -HVH21    <------ZmHOX2a(1) <------MYB83                    <----------DOF2      --------->GLK1(2) --------WRI1     ------->TEIL<------ZmHOX2a(1)          ---------->ID1          <---------GLK1(2) <-   caatgtcggagaaggagacgaactttttggtaggataagcatttcataagattaagctcgtccctttagtcctataactgatagaatcttagagctatgg  4984200                  <---------DEAR3(2)                  <---------HSFC1(2)         ------>NtERF2     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    <<<<<<<<<GATA-3                                                                           <------    <<<<<<<<<GATA-2                                                                          <------NtERF2    <<<<<<<<<GATA-1                                                                         ------>NtERF2    <---------GLK1(1)                                                                      --------->ANAC46    <<<<<<<<<GATA-4                                              --------->ARR14(2)        --------->ANAC58   <---------AGP1 <---------MYB46(3)                        ----------->GT1                --------->ANAC58   --------->ARR11(3)                                    --------->MYB52(1)              --------->ANAC46   <---------ARR11(3)                            --------->LBD16 <-----------ARR10       --------->ANAC58  <---------CCA1(2)                             --------->LBD16  <---------ARR11(3)      --------->ANAC58 ------ANAC58     --------->HSFB2a(1)           <---------LBD16  <---------ARR14(2)   <---------REM1(2) ------ANAC58     --------->HSFC1(2)           <---------LBD16   --------->ARR11(3)   --------->ZAT14 ------ANAC46 ----------->HVH21               <---------LBD16    --------->GLK1(2)   <-----------HVH21 --------MYB52(1)<---------DEAR3(1)   ------------>CBF <---------MYB52(2)           --------->ANAC46   cgttagatctctgccttcgacggttctaacttctcgtgagttcaattttcccgggaaacaaacagaaaatctgggctcttaaatacacttcacgcgcctt  4984300                 --------->ALFIN1                ------->PIF5                <-------MYC3                                                                      <--                ------->MYC2                                                                      ---                ------->MYC3                                                                     ----                <-------MYC2                                                                     <---                <-------PIF5                               <---------bZIP60(1)                   <---               <---------ANAC58                            <---------TGA2(1)          <---------AtLEC2               <---------ANAC58                            --------->bZIP60(1)     ------>ZmHOX2a(2)               <---------ANAC46    <----------DOF2      ----------->HVH21         <---------At4g35610               --------->ALFIN1<-----------GT1  ----------->RAV1(1)      <---------AtMYB61   -------- ----DOF2---------->DOF2<---------TOE2(3) --------------->AtSPL8  ---------->DOF2 --------->At4g35610   gatgagaaatttagagcgcgtgggataatgtttttatcttttgtccagtacaacataagtgacataataaaagttttggttttgatctgcaaggatgcaa  4984400                                                                                       <-------------                                                                                       --------------                                                                                      ---------------                                                                                      <--------------                                                                                      <--------------                                                                                      <--------------                                                                                      ---------------                                                                                      ---------------                                                                                      ---------------                                                                                    <---------ARR14(2)                                                      <---------ANAC46              --------->ARR14(2) ------ATHB1                                        <---------ARR14(2)      <---------MYB52(2) ------>ATHB12                                    --------->HSFC1(2)   --------->TGA2(1) ----->ICU4                                       <---------HSFC1(2)   <---------TGA2(1)         ---- ------YAB1                                    <------ZmHOX2a(1)       --------->bZIP60(1)    <------MYB83 ------ATHB12                          --------->ATHB12           ----------->RAV1(2) <-------------- ---->CBF             --------->ANAC46<---------YAB1--------->ARR14(2) <---------bZIP60(1)    <------MYB46(1)   tgattcaaatagaaactagattactcacaactacatatttttgattagaggacgtttctggtgatgaaacctgatgtcactaactatatccacatttggt  4984500     --------->DOF5.7(2)    <-------GAMYB   <---------MYB46(3) --AGL15 ->AGL15 -->AGL2 ---AGL1 ---AGL3 ---AG                  ----------->HVH21 -->AG <---------DOF5.7(2)  ---------->DOF2 -->AGL1             --------->ZAT6                   ---------->DOF2 -->AGL3            <---------YAB1                   --------->YAB1 ------>DOF2      <---------ICU4     --------->AHL20(2)                                    --------->WOX13(1) ---AGL2          --------->YAB1     <---------AHL20(2) ----------->GT1     <---------GLK1(2)   aaaggtcgttaacatctaaattatcactgacaaagacaaataaataccaaaacaataaaagtaaaataggtttgtccagagtcttcatttcatcaatcta  4984600  Previous    Next  AGI:  At5g15340.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15022.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4982276    to: 4984147    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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