Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->At4g35610                                                                            ------->GAMYB                                                                           --------->MYB46(3)                                                                          ------>MYB46(1)                                                                          -------->P            --------->CCA1(2)               ----------->HVH21             ------>MYB83        --------->ANAC55(2)            --------->LBD16                   --------->MYB55(1)        <---------ANAC55(2)   --------->ZAT14                           <---------MYB111(1)        <---------ANAC46 --------->ZAT18  <---------At4g35610           --------->MYB46(3)        <---------TOE2(3)<---------ZAT14  --------->At4g35610           --------->DEAR3(1)       <---------LBD16 <---------------AtSPL3                           <---------MYB111(2)    <----------DOF2    <---------------AtSPL8              --------->DEAR3(1) --------->ZAT2 ->GLK1(1) --------->ARR11(1) --------->ZAT18      <---------MYB46(3)   <---------MYB55(2) >ARR11(3) --------->ARR14(2) <---------ZAT18  --------->ANAC58         --------->AtMYB61 -ARR11(3) <---------ARR14(2) <---------ZAT14  --------->ANAC58        --------->MYB46(3)    -------- -AGP1--------->MYB52(1) --------->ZAT14  --------->ZAT2<---------ANAC46<---------MYB46(2) --------->GLK1(2)   tagcagcattacggatacggctaagagagtactgcactctccagagctcacgcttgttacgcagaccatactcaccaaccagcttcaattcagaatcaag  4936000                        --------->PCF5                   <---------bZIP60(2)                                                              <                   --------->O2                                                                    --                   <---------TGA1a                                                                <--                   =============================================MYC_MYB                          <---                   =============================bZIP_DOF                                         ----                   <---------O2                                                                  <---                   --------->TGA1a                                  <-------TEIL                 ----                   <---------ANAC46                            <---------ALFIN1                ------              <------ZmHOX2a(1)                         ------->GAMYB--------->YAB1       <---------TOE1(3)       --------->HSFB2a(2)                             --------->MYB46(3)                 <---------TOE2(3)      <------------------SPL14    --------->ARR11(3)   <---------MYB52(2)           --------->At4g35610    ------>ZmHOX2a(1)--------->ALFIN1<----------DOF2 ----------->RAV1(1)          --------->YAB1<---- ->YAB1<---------HSFB2a(2)        <---------ARR11(3)--------->MYB46(3) --------->AtLEC2 ---------->DOF2   acgctccttctcgtaaggacgacgtggtcccttgaaggtctttccatctattcaacaacaaacacacacattcatacaaaattatcagcataaaggttag  4936100                                                                     <-----------GT1            <---------ARR11(1)                                      <-------TEIL            <---------ARR14(2)                              --------->ANAC58            ------->TEIL                                    -------->P        <-------TEIL                                        --------->ANAC58 ----------DOF2                                            ------->GAMYB ---->ZmHOX2a(2)                                          --------->MYB46(3) ----ZmHOX2a(2)          <-------TEIL                     <---------MYB55(2)                 -------- ------ARR11(3)     <---------WOX13(1)                    <---------MYB111(2)   --------->AHL20(2) ----->AGP1<---------CCA1(2)                           --------->REM1(1) --------->GLK1(2)  <-------- ------AGP1<---------ARR14(1)                     ----------->GT1 <---------GLK1(2)         <<<<<<<<<ARR2 ----->ARR11(3)  <---------TOE2(3)              ---------->DOF2   --------->ARR14(2)   --------->ZAT6 ----->ARR10--------->ARR14(2)              --------->TOE2(3)     <---------ARR14(2) <-----------GT1- -----CCA1(2)    <---------YAB1             --------->TOE1(3) ------->GAMYB     <---------AHL20(2)  -   atctttgaggctcgtatctaagattgattcatttcagaaactaaaacctcaaaagttacaacaacccagattcacaatctatatatataacacaatcaaa  4936200                     --------->ATHB12                                ----------->GT1                < ->YAB1              --------->YAB1                                <---------At4g35610              - -ATHB12   --------->TOE2(3)                   --------------------->WRI1       <----------ID1      - -------->TOE2(3)   <---------ATHB12          <---------ANAC46     --------->At4g35610 --------->DAG2 -------->TOE1(3) --------->WOX13(1)     <---------ICU4            --------->ZAT2     ---------->DOF2   aacctcagataatccctaatctatcatttgatattgagagaaatcactacgtagatcgaatcgaaaatgagctgtgatataaacgacgaaaaggagagaa  4936300                                                                 ================================HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)                             ----------->RAV1(1)                <------ZmHOX2a(2)                         ------->MYC3                           --------->At4g35610               --------->MYB52(2) --------->ARR14(2)            =================================HOX2a_HOX2a           <---------ANAC58<---------ZAT18    ------>ZmHOX2a(1)<---------ARR14(2)           <---------ANAC46--------->ZAT18    =========================HOX2a_HOX2a             ------           <---------ANAC58<-------TEIL       ==========================HOX2a_HOX2a       <------ZmHOX2a(1)          <---------LBD16<-------MYC3    ---------->ID1        --------->ARR14(2)--------->ANAC58   - ---------HSFC1(2)       <-------MYC2  <---------ANAC58   <---------DEAR3(1)     --------->ANAC58  <- -------->HSFC1(2)       ------->MYC2<-----------GT1   --------->ARR14(2)     --------->ZAT18-------- -------->At4g35610 <---------MYB52(2) <---------ANAC58<---------ARR14(2)     <---------ZAT18--------   gaagcttacagttgcggtagtagcaaacgtgcaccatattttcgtctccttactgcaaattcggcgatctgaataactagggcacgcagagaggaacgaa  4936400                                       --------->ANAC46                                       --------->ANAC58  --------------->AGL15                                       --------->ZAT6    <----------DOF2                                     --------->MYB52(1)  <---------------AGL15                          --------->TOE2(3) <---------ALFIN1       <----------DOF2             <----- ---->DOF2             --------->GLK1(1)   --------->ZAT14  <------------CBF            <------------CBF -------->CCA1(2)      <---------GLK1(1)   <---------ZAT14 --------->ATHB12          <-----------TBP ---------ID1        <------ZmHOX2a(1) --------->ANAC58 <-----------------AGL1 <---------TOE1(3) ->ANAC58     <-----------TBP     --------->TOE2(3)     <-----------------AGL2 <---------TOE2(3)<---- ->ANAC58  *TSS<---------AHL20(2) --------->TOE1(3)  <----------DOF2<----------DOF2<----------DOF2   agagacgaatgaactaatttataggatttcttaaaaccctaacgctacactctcactttctttattgggcctttacgaattaaggctttatattgggcct  4936500                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                     --------->YAB1                                                                                    <---------ATHB12                                                                               --------->TOE2(3)                                                                             <---------AHL20(2)                                                                         <---------AHL20(2)                     --------->PCF2                  <---------ANAC58    --------->AHL20(2)      <---          <---------ANAC58                <---------AHL20(2)            --------->AHL20(2)     <-----     <---------ICU4  --------->PCF5      --------->AHL20(2)             <---------AHL20(1)   -------- -----DOF2<---------ANAC58      <---------At4g35610  <---------ANAC58   --------->AHL20(1)   <------- ------DOF2<----------DOF2<---------MYB52(1)<---------YAB1              <---------AHL20(2)  <--------   ttacgaattatggctttatattgggcccgttttgagatgtcgatttatttttgagtcttgcgcttgggctcgaatttattttcttaatcataaaattatt  4936600                                                                                            ---------                                                                                         --------->AHL20(2)  --------->ZAT18                                                                       --------->AHL20(2) ------AHL20(2)                                                                        <---------YAB1 ----YAB1                                                                             --------->TOE2(3) ->AHL20(2)                                                <---------AtLEC2         <---------YAB1 --AHL20(2)  <---------------AtSPL8                      <-----------GT1    <---------TOE2(3)-------- -AHL20(2)   <---------ZAT6<-----------HVH21 --------->AHL20(2)  <----------DOF2--------->AHL20(2)   tttatgcactgaatagtggtacctagaaatgtcatttgaacaaaaaaaaaaatgtcattttacatgtcttttggcatttagattatatcattaaaaaagt  4936700                                          <---------ARR11(3)                                          <---------AHL20(1)                                          --------->AHL20(1)                                 <--------ATHB1                                 <---------ICU4                                                  <---                                 -------->HAHB4                                                ------                                 --------->ATHB12                                             <------                                <---------ATHB51                                           <---------AHL20(2)                                --------->AHL20(2)                    ----------------->AGL1  <------                                --------->ICU4                    <---------ANAC58         --------->ARR11(3)                                <---------AHL20(2)         <-----------GT1                 <---------ARR11(3)                    ----------->GT1       --------->ARR11(3)      <---------ANAC58         --------->AHL20(1) ->DOF2        --------->AHL20(2)--------->ATHB51    --------->ARR11(3)                    <---------AHL20(1) ->DAG2  ---------->DOF2        <---------ATHB12     <---------ARR11(3)--------->TOE2(3)   --------->AHL20(2)   tgatgaaaaaaaaaagattatatcgtaaaaacaaataattgcaatattttgttgagatgttttaccagtcttgccttaatagaacagcaagaatatatta  4936800                             --------->MYB52(1)                             ------>MYB83                             ------>MYB46(1)                            --------->MYB55(1)     <---------AtMYB61     <---------MYB46(2)      ------>MYB83     --------->ALFIN1      <---------MYB59         -------->P ------YAB1             <-----------GT1            ------>MYB46(1)   <-----------GT1 --->YAB1         --------->YAB1              <-----------GT1     <----------DOF2         --------->MYB52(1) ---YAB1         <---------ATHB12         <-----------ARR10    ------->TEIL         --------->AHL20(2) ---AHL20(2)   --------->WOX13(1)      <---------MYB59        <---------CCA1(2) --------->MYB46(3)   taagtgagtggtgtctccaatcatattaacctaacgtagtgcctaatcttaccaactcttagttgtatcttttaccatttcaacaaataaacaaacaggt  4936900  Previous    Next  AGI:  At5g15200.1    Description:  40S ribosomal protein S9 (RPS9B). Identical to 40S ribosomal protein S9-1 (RPS9B) [Arabidopsis Thaliana] (GB:Q9LXG1); similar to 40S ribosomal protein S9 (RPS9C) [Arabidopsis thaliana] (TAIR:AT5G39850.1); similar to 40S ribosomal protein S9 [Catharanthus roseus] (GB:CAG47084.1); similar to unknown [Picea sitchensis] (GB:ABK21901.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4/S9, eukaryotic/archaeal; (InterPro:IPR005710); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912) Range:  from: 4934886    to: 4936411    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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