Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------------AGL15                                               ----------------->AGL1                                         <---------At4g35610                      <---------ICU4     --------->At4g35610            <---------ANAC46       <---------AHL20(2)<-----------GT1 <---------ZAT2         --------->YAB1      <---------YAB1 --------->ICU4      --------->ZAT2      --------->TOE2(3)   --------->ICU4 <---------YAB1        ------->TEIL     <---------ARR14(2)     <---------RAP2.6(2) ---------YAB1 <---------YAB1  ----------->HVH21<-----------RAV1(2)--------->YAB1 -->DOF2 <---------TOE2(3)  --------->ZAT6     ----------------->AGL2   <---------bZIP60(2)         -   ttataatttttaatgttgttatagttattaccactgacaacgaagctgagccagaagtggaaacgataatggtgatgtgtttgcgactgagacgcttatc  4929100                           --------->ATHB12                          <---------YAB1                        --------->YAB1                                     --------->AHL20(2)                       <---------ATHB12           <---------YAB1         <----------DOF2                       --------->ICU4       --------->DAG2              --------->TOE2(3)                --------->ANAC58           ---------->DOF2<---------At4g35610       <----------DOF2 -------->ATHB12--------->ANAC58     <---------LBD16      --------->At4g35610 --------->ARR14(2)-----   gacgattgaaacgttgccacggccaatgatgtttggaccttcggataaagttatccttggagatgaattgtcttcctttaaatctgctttcaatggaatc  4929200                                                 <---------------AGL15                                                 --------------->AGL15                                                <-----------------AGL2            ----------->RAV1(1)                 <-----------------AGL1   <---------TOE1(3)       =================RAV                     <-----------------AGL3   <---------TOE2(3)       ----------->RAV1(2)        --------->ANAC58           --------->ARR14(2)                     -      -------->P --------->ARR14(2)         --------->HSFC1(2)   ----------->GT1            ---------  --------->ANAC58  <---------ANAC55(2)     <---------HSFC1(2)--------->MYB52(1)            ---------  --------->ANAC46 <-------TEIL   --------->ANAC58           <---------ARR14(2)            <---------ANAC55(2)  --------->ANAC58--------->CCA1(2)         --------->HSFB2a(1) --------->ANAC58           ---------- ---->AHL20(2)   <---------ARR14(2)         <---------HSFB2a(1) --------->ANAC58         <-----------GT1   aaataagcaacctgcaacagatacataaatcagagcaagacatcgaattttctgtaattggaagaaacggaaattagggttttgttttgaattacctgag  4929300                                                                                     --------->STY1(2)                                                                               --------->ZAT18                                                                               --------->ZAT14                  --------->O2            --------->ANAC58                     <---------ZAT14             <----------ID1               --------->ANAC58            <---------ANAC58 -------->ZAT18   <---------O2          --------->TOE1(2)             <---------ANAC58 >TOE1(2)<---------TOE1(3)<---------TOE2(3)        >>>>>>>>>TBF1      <---------ANAC46  --------->MYB52(1) >TOE2(2)<---------TOE2(3)<---------TOE1(3)     >>>>>>>>>TBF1        ------>NtERF2<---------MYB59 ->RAV1(2) <------ZmHOX2a(1)           --------->MYB46(3)  <-------TEIL        <---------ZAT18   agtgagccattaaggaagacaagtgtctgaggttgaattgaaccaaggaagaagaagaagatgcaaaacgctgcgtttcagtgaactaactagcgaaaat  4929400                                                                     ----------->RAV1(1)                                                                     ------>NtERF2                                                                    --------->DEAR3(1)                                                                    ----------->HVH21                                                                   --------->RRTF1(1)                                                                   <------NtERF2                                                                   --------->ATERF1(1)                                                                   --------->RAP2.3(1)                                                                  <---------ERF1                                                                  <---------RAP2.3(1)                                                                  ------>NtERF2                                                                  <---------RRTF1(1)                                                                  <---------ORA47(2)                                                                  <---------DEAR4(2)                                                                  <---------RAP2.6(1)                                                                 <---------DEAR3(1)                                                                 --------->ATERF1(2)                                                                 --------->DEAR3(1)                                                                 <---------RAP2.3(3)                                                                 <---------RAP2.3(2)                                                                <---------ABI4(1)                                                                --------->ATERF1(1)                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                               <---------RAP2.3(1)                                                               --------->LBD16                                                               <---------DEAR4(2)                                                               <---------ERF1                                                               <---------RAP2.6(1)                                                               <---------ORA47(2)                                                              --------->ATERF1(2)                                                              <---------RAP2.3(2)                                                              <---------ATERF1(2)                                                              --------->DEAR3(1)                                                              <---------DEAR3(1)                                                             <---------LBD16                                                             --------->ATERF1(1)                                                            ------>NtERF2                                                            <---------ATERF1(1)                                                           --------->ANAC58                                                           --------->ANAC46                                                        <---------REM1(2)                           <                                                    <---------ARR14(2)                          -----                                               <---------DOF5.7(2)<---------ATERF1(1)         -------                                             --------->DOF5.7(2)<------NtERF2                --------                                         --------->MYB52(1)--------->ANAC58                <---------ICU4                                   --------->YAB1   --------->ARR14(2)<------NtERF2--------->RAP2.6(2)                              <---------ARR11(3) <------------MYB.PH3(1)--------->WOX13(1) --------->YAB1                            --------->ANAC58 --------->At5g28300--------->RAP2.3(1)------->GAMYB<----                            --------->ANAC58------->GAMYB<---------ALFIN1  --------->YAB1 <---------YAB1                   --------->ICU4 <-------TEIL --------->MYB52(1)<---------ATERF1(2)    --------->YAB1   tttgggatgtttcaatggagaataatgggcaagaaattcatagtaacggtaacggttctccacgccggcggcgacaatcagacaaccgcatcatcatcag  4929500                                                                             <-------GAMYB                                                                            <------MYB83                                                                            <------MYB46(1)                                                                            <---------DEAR3(2)                                                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      --------->ZAT14                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <---------REM1(1)                                                                     <---------ANAC46                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   <---------ANAC46       xxxxxxxxxxx                                                                   <------MYB46(1)        xxxxxxxxxxx                                                                  <---------AtMYB61 --------->ANAC58                                                                  <---------DEAR3(1)--------->ANAC58                                                                  --------->ALFIN1  --------->ANAC46                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                xxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxx                                                               xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxx                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxx>smallRNA(se3)                                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               *TSS<------MYB83xxxxxxxxxxxxxxxxxxxxxx                                                               xxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   --------->AHL20(2)          xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <---------AHL20(2)          xxxxxxxxxxxxxxxx>smallRNA(le3)                                  --------->AHL20(2)           xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <---------AHL20(2)           xxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------AHL20(2)            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ARR11(3)               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <----------DOF2        --------->AHL20(1)               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     *TSS   <---------ANAC46  <---------ARR11(3)               xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    x  <---------MYB46(3)          <---------AHL20(1)               xxxxxxxxxxxxxxx>smallRNA(fl3)     ---- ---------MYB52(1)       ------------>CBF                      xxxxxxxxxxxxxxxx>smallRNA(si3)  <----- ---->At4g35610      --------------->AtSPL8                   xxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxx -->MYB46(3)<---------ANAC58  --------->AHL20(2)        ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->At4g35610<---------ANAC58  <---------AHL20(2)      <---------YAB1xxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----At4g35610      <---------------AtSPL8    <------------CBFxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<x   ccgatgggtctttggcttgtgaagttgtacaatatattaatttaagaaacattgtcatcaaagtctgggtggtgtagtcggttatcacgctagtctcaca  4929600                     <---------LBD16                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxx>smallRNA(s)                xxxxxxxxxxxxxxxx>smallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(s)                             <---------HSFC1(2)               xxxxxxxxxxxxxxxx>smallRNA(i)                              --------->HSFB2a(1)          <---------TOE1(2)                                              <---------HSFB2a(1)          --------->LBD16                                         <-----------HVH21         <---------LBD16                                        -------->ABF1         <------NtERF2                                          <-------MYC2      --------->PCF5<---------LBD16                             ------->MYC4     <-----------HVH21--------->LBD16                           ------->MYC3   xxxxxxxxxxxxxxxx>smallRNA(si3)                               ------->MYC2   xxxxxxxxxxxxxxx>smallRNA(si3)                                <-------MYC4  xxxxxxxxxxxxxxx>smallRNA(le3)                                 <-------MYC3 xxxxxxxxxxxxx>smallRNA(fl3)                                   <--------ABF1 xxxxxxxxxxxx>smallRNA(fl3)                                    --------->TGA1a xxxxxxxxxxx>smallRNA(si3)                                     <---------TGA1a                      < xxxxxxxxxx>smallRNA(fl3)                                      <---------O2                      <--- >smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)                    --------->O2                    ------ xxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------ANAC55(2)     --------->YAB1 ----->ANAC46xxxxxxxxxxxxxxxx>smallRNA(s)           <-----------GT1      --------->HSFC1(2)   <------ ----ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(i)         <---------AHL20(2)     ------->TEIL --------->AHL20(1) xxxxxxxxxx>smallRNA(s)------>NtERF2    <-----------GT1        --------->ANAC55(2)   --------->AHL20(2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------AHL20(2)     ----------->HVH21         --------->YAB1 <-   cactagaggtccccggttcgaacccgggctcagacatttttttttcttcatttttttcaattgacacgtgtccgaaccttgcccaaaaataatagtatga  4929700                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   --                                           --------->ARR14(2)                                      <-                                           --------->KAN4(2)                                       --                                           <---------ARR14(2)                                      <-                                          <----------TaMYB80                                       <-                                          <---------KAN4(1)                             <---------ANAC46                                          --------->HSFB2a(1)                           <---------ANAC58         <-----------GT1                  <---------HSFB2a(1)                           <---------ANAC55(2)       <---------AHL20(2)                 --------->KAN4(1)                             --------->ANAC55(2)  <---------AHL20(1)                     ---------->TaMYB80                             <---------ANAC55(1) ---------TOE2(3)                        <---------KAN4(2)                              <---------ANAC58 ------WOX13(1)                          <---------ARR14(2)                             <---------bZIP60(2) --->ATHB12                     <-----------GT1          --------->ATHB12   --------->AtLEC2      --- ---YAB1<-----------GT1      ----------->GT1            <---------YAB1   ------->TEIL   <---------O2- ----------GT1       <---------ANAC46    --------->ARR14(2)<---------WOX13(1)    <---------GLK1(2)<--   ttaacatattttatcttcccattacgttgaaatgttacaatcgaatattcgaatgagtgtgattggaattggatgaacatgcagattgttacgtggacaa  4929800                                                                                --------->TOE2(3)                                                                         <---------AHL20(2)                                                                         --------->AHL20(1)     <---------YAB1                                                      --------->AHL20(2)   --------->YAB1                                                        <---------AHL20(1) --------ATHB1                                                          --------->AHL20(2) ---------ICU4                                                      --------->ICU4 ------->HAHB4                                                      <---------YAB1 ------->ICU4                                                   <---------ARR11(3) --------ATHB51                                                 --------->ARR14(2) ------->AHL20(2)                                               <---------ARR14(2)    --------->YAB1 --------AHL20(2)                                               --------->ARR11(3) --------->WOX13(1) --------YAB1                                                  <------ZmHOX2a(1)--------->YAB1 ------>AHL20(2)                ----------->GT1              <---------TOE2(3) <---------YAB1 -------->ATHB51      --------->AHL20(2)   ---------->DOF2 ---------->DOF2     ----------->GT1 -------AHL20(1)  <---------ATHB12   <-----------GT1      --------->CCA1(2) <---------AHL20(2)   aataattgtgatcaagtccaaagattaaacaatgtagtttaactccaaagagtttgtaagataaaggatattgattatattatgttaatcaaatttttaa  4929900                                                                                                  <--                                                                                             ------>MYB46(1)                                                                                             --------                                                                                             ------>MYB83                                                                                             --------                                                                                            ---------                                                                                           <---------MYB111(2)                                                                                           <---------MYB46(2)                                                                                           <---------MYB111(1)                                                                                           <---------MYB55(2)                                                                                           --------->MYB46(3)                                                                                           <---------MYB59                         --------->ATHB51   <---------ANAC46                             ------>MYB46(1)                         -------->ATHB1 <---------At4g35610                              ------>MYB83                  ------>MYB83          --------->At4g35610                              -------->P                  ------>MYB46(1) <---------DAG2             --------->ANAC46           ------>ZmHOX2a(1)                  -------->P   <-----------GT1               --------->ANAC58          <---------MYB111(2)                 ------>ZmHOX2a(1)<----------DOF2            --------->ANAC58        ------>ZmHOX2a(1)     <---------AHL20(2) <---------YAB1  <-------GAMYB  <-----------HVH21     --------->TOE2(3)  -----   gatgtattattttgttctcctaccgtattattgtcacttttcagttgcgaagtcaaatgtcacaagcaatattgttcattgttaatcctcctacctacca  4930000  Previous    Next  AGI:  At5g15170.1    Description:  tyrosyl-DNA phosphodiesterase-related. similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63474.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69691.1); similar to Os07g0530100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059844.1); contains InterPro domain Tyrosyl-DNA phosphodiesterase; (InterPro:IPR010347); contains InterPro domain SMAD/FHA (InterPro:IPR008984) Range:  from: 4926097    to: 4929505    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15175.1    Description:  pre-tRNA. tRNA-Val (anticodon: CAC) Range:  from: 4929563    to: 4929636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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