Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     XXXXXXXXXXXXXXXXXXXX>MIR3932A/B                  <----------DOF2              <---------ZAT14           <---------ANAC58           <---------ANAC46        <----------DOF2                                               --------->ANAC58       <---------ANAC58                                               --------->ANAC58       <---------ANAC46                                           --------->ANAC46       <---------ANAC58                                        --------->ANAC58                    <- ------ATHB1  --------->ZAT14                                  --------->ANAC58                   --- ------>YAB1  <---------ZAT18                                  --------->ANAC46            <---------AHL20(2) ------ATHB12 --------->ZAT18                     <---------YAB1 ------->GAMYB         --------->ICU4 ----->ICU4<---------ANAC58                <-----------GT1<-------TEIL--------->ANAC46<---------TOE2(3)   tgattttttgcttgagtgaactttgtaacgaaaatgaaatgttagtaaccatatgaaaggttcacaacccacaagaaatagacttcttaatgtttaatag  4895400                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               <-----                                            --------->AtMYB61                                  <-----                         --------->ANAC58   <---------ALFIN1                                   ------              <----------DOF2              --------->MYB46(3)          --------->YAB1          ------              <---------DAG2----------->RAV1(1)         <---------RVE1(1)                      ------           <---------ARR11(3)      <---------ANAC58    <---------GLK1(2)      <------ZmHOX2a(2)<-----       ---------->DOF2   --------->ANAC58--------->ANAC46   <-----------GT1  --------->ARR11(3)<----- ------TEIL--------->ARR11(3)      <---------ANAC58    --------->ARR11(3)    <---------ARR11(3)------ ------>CCA1(2)        ---------->DOF2  --------->ZAT18<---------ARR11(3)---------->DOF2  --------->YAB1   atacaaaatcaaagacctttatgaacaaagcaacatagcatgtccaccaccagtctagattttttctattgaatcaaaagatcaattgacaaacataacc  4895500          --------->WOX13(1)        <---------ATHB12   <---------ANAC55(2)   --------->ANAC55(2)  --------->MYB59 ---->TOE2(3)--------->YAB1                       ------>ZmHOX2a(1) ---------->AGL15                             --------->ARR14(2) -----------AGL15                             <---------ARR14(2) ------------AGL2                          <---------YAB1 ------------AGL3                       <---------AHL20(2) ----------->AGL3                      <---------AHL20(1) ----------->AGL2                      --------->AHL20(1) ----------->AGL1                      --------->AHL20(2)                 --------->TOE1(3) ------------AG                        <---------AHL20(2)<---------AHL20(2)     ---------->DOF2  <--- ------------AGL1         <---------AHL20(2)  ------->TEIL                --------->TOE2(3)      ---- ----------->AG     ----------->GT1   --------->YAB1 ------>ZmHOX2a(1)    <---------MYB59        ----   aaaataggtaatcactcaaaactagtatataatctaagaaatataatgaatcctcctatttttatcccaaataaaacctaaacaaagaaaacatttggga  4895600         --------->AHL20(1)                                --------->GLK1(1)         <---------AHL20(1)                                <---------GLK1(1)       --------------->AGL15         <---------AHL20(2)                               <---------ARR14(2)       <---------------AGL15         --------->AHL20(2)                               --------->ARR14(2)      ----------------->AGL3      --------->YAB1                              --------->YAB1                  <-----------------AGL2    --------->AHL20(2)                            <---------ICU4                  <-----------------AGL3    --------->AHL20(1)               ------>MYB46(1)   <---------ANAC46   --------->At5g28300   --------->YAB1                    ------>MYB83<---------ATHB51   ------>ZmHOX2a(1) ------At4g35610                <-----------GT1  <---------ATHB12  --------->TOE2(3) ------->GT1        --------->AHL20(2)           --------->ICU4    --------->TOE1(3)   <------------CBF ----->At4g35610--------->AHL20(2)--------->MYB46(3) --------->MYB52(1)  ----------->GT1   gctaaaaataataaattttaaaataaaaacatagaaaccatccacaaacaaataatgacggatatccatccttagcggtgaatttctaaaattggagatt  4895700                                                            --------->YAB1                             --------->TOE2(3)       *TSS  <-------TEIL                             --------->TOE1(3)      <---------SPL7                      --------->TOE2(3)      <---------ARR14(2)                                  ----                 --------->AHL20(2)          --------->ARR14(2)            <----------DOF2  ---------                 <---------AHL20(2)    <-----------GT1 <---------YAB1---------->DOF2  ---------->DOF2   acttcttaatcaagtttatttaaacatcaaaccttcacattttacaaaattcgcagtacgattcatcatcttaaaggctttaggctctaaaagaaaaaat  4895800                                                         --------->TOE1(3)                                                         --------->YAB1                                                       --------->ARR11(3)                  --------->ANAC58                     <-----------ARR10                  --------->ANAC58                     <---------ARR11(3)             ---------->DOF2       --------->DAG2       ---------->DOF2          <---------AHL20(2)       ----------->GT1      ---------->DOF2     --------->ETT(2)  <-----------GT1 <-----------GT1  --------->ANAC58 ------->GT1    ---------->DOF2       <---------AHL20(2) --------->TOE2(3)   --------->ANAC58    ---- >AHL20(2)    <---------MYB59      ----------->GT1  --------->AHL20(2)    ------------------------>ANAC81   agaaaaaaaaaagcgacctaaagccatgtcgaaagcttagtaaatttctccatataaaatcttaaccccttaagaaaacaaggaaaaaaaaagaagagat  4895900         <---------AHL20(2)        --------->AHL20(2)       <---------YAB1      --------->AHL20(2)                                                             ---------->DOF2      --------->AHL20(1)                                 ---------->DOF2   <---------MYB52(1)     <---------ICU4                      --------->AHL20(2)               <-------GAMYB           <-- <---------AHL20(2)                      <---------AHL20(2)              <---------MYB46(3)      <--- --------->AHL20(2)                      --------->AHL20(1)  ---------->DOF2 --------->MYB59<-------- ------->GT1<---------AHL20(2)   ---------->DOF2  ------------------------>ANAC81 <-----------HVH21--   tgtttaaatattatataaaaaaactatttttctgagaaagaaattttttgaaaaacaaaaaaagaaagatggagatggttaggctgtcaaagttgatgtt  4896000                                                                             <------NtERF2                                                                            ------>NtERF2                                                                           --------->RAP2.3(3)                                                                           ----------->HVH21                           --------->AtMYB61                               --------->DEAR3(1)                          ----------------->AGL1                          --------->DEAR3(2)             <---------RAP2.6(3)                                       ------->GAMYB            <---------ANAC58                                 <---------AtMYB61               <------- -------TOE2(3)  <---------YAB1                 --------->At4g35610   <---------MYB52(2)  --------->ARR14(2) --------GT1<---------ANAC58                    --------->ZAT2   --------->ANAC58--------->ANAC58 -TOE2(3)  --------------->AtSPL3               <---------At4g35610   --------->MYB46(3)  <---------ARR14(2) ------->ANAC55(2)     <---------ETT(1)         <---------ZAT2   --------->ANAC58--------->ANAC58   tacgttttgtattgccgttctaattccgaccattcgaggtaacatttctgagctggacgagtattggtcgcaacgagccgacgaagccagagaattcact  4896100                       --------->ANAC46                       --------->ANAC58                                                 --------->TOE1(3)                       --------->ANAC58                                        --------->ARR11(3)                    ------>ZmHOX2a(1)                                        <---------YAB1                    ======================HOX2a_HOX2a                     --------->AHL20(1)                  ------>ZmHOX2a(2)                                       <---------ARR11(3)   <-----                  <---------ICU4       <----------DOF2             --------->ANAC58     <---------MYB59              <---------YAB1       <------ZmHOX2a(2)               <<<<<<<<<<WRKY18     --------->TOE2(3) ----GT1<---------YAB1 --------->ANAC55(2)       <-----------HVH21 --------->ANAC58   ------->TEIL   cttcaagcttaccattctgatccttacgaaatcgtcgatcactttcacgagcgtcactacgagtaagtcaagtcaatatatgattttgaacctaaaaaca  4896200                                                --------------->AtSPL3         ------->TEIL     <---------ICU4                            ---------->ID1       <---------ANAC46                <   <---------YAB1                    ---------->DOF2              <---------ANAC46              <---- ----ICU4                       --------->At4g35610              <---------AtMYB61      --------->ZAT6   ttactaatattgattcaattgtttattatctgatagctaaaaagtctttggccttactatttctgttttggtgtatatatgtatatagcaactctactga  4896300  Previous    Next  AGI:  At5g15110.1    Description:  pectate lyase family protein. Identical to Putative pectate lyase 19 precursor [Arabidopsis Thaliana] (GB:Q9LFP5); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G01270.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79927.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectate lyase, N-terminal; (InterPro:IPR007524); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 4895753    to: 4897685    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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