Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->At4g35610                                                          <---------At4g35610                                                         <-----------RAV1(1)                                                       ----------->RAV1(2)                   --------->GLK1(1)                   <---------At4g35610                  --------->ARR11(3)                   --------->At4g35610                  <---------ARR11(3)        --------->ARR14(2)              --------->At4g35610           --------->ARR11(1)                                     <-              <---------At4g35610           <---------ARR14(2)                      <---------ANAC58<          <-----------HVH21                 <---------GLK1(2)  <---------DAG2       <---------ANAC58<         --------->ALFIN1           ---------->DOF2  --------->REM1(1)<---------At4g35610          <-     ---------->DOF2------>ZmHOX2a(2)     ----------->ARR10    <----------DOF2------>ZmHOX2a(1)    --   caaattcaaaagtgtgagatgatctccatcaatgtgtgcaaagctagatttggcttcatctgctgctttttgagcttctcctcttggcctgatgaaacaa  4823300      --------->YAB1     <---------ZAT6 --------------AtSPL8                                                              --------->ALFIN1 ------MYB83                                --------->At4g35610      --------->GLK1(2) ------MYB46(1)               --------->GLK1(2)                      <-----------ARR10    =========== --------------AtSPL3        <---------GLK1(2)         <------ZmHOX2a(1)<----------DOF2   ---------->DOF2 ------->MYB59      --------->GLK1(1)    <---------At4g35610     --------->YAB1  <-----------RAV1(1)   tttggtactgataacatcgcagaaatcgaaagaatctcgtttgagcagttgaattgaggactgactatgagcatctttgccatctgtgggtctaaaggaa  4823400              --------->TGA1a              --------->At4g35610              <---------TGA1a              ----------->RAV1(2)              <---------At4g35610              =================bZIP_DOF              <---------O2                     <---------ZAT18                                     <-              --------->O2                     --------->ZAT18                                     ==           ----------->HVH21           --------->YAB1                                           <----         <---------At4g35610           <---------ICU4                                          ------         --------->At4g35610          <---------YAB1                                         <------ZmHOX2a(1)       <---------ICU4          <---------At5g28300                                           ========    --------->YAB1  <----------DOF2   --------->ICU4                                   <---------GLK1(1) =======================bZIP_DOF    --------->YAB1      <---------ATHB12--------->ANAC46  <----------   actcactcatcatctcacctgtctttgtcaagttacagtcatcatcaagtgctcccaaatgatacaaatcgtccaaggcccgagcgagggtatcaggagc  4823500                      --------->SPL7             <------ZmHOX2a(2)             <---------------------WRI1            <---------ARR11(3)   --------->GLK1(2)<---------SPL7 -----ZmHOX2a(1)    --------->ZAT18 ===================HOX2a_HOX2a -------RAV1(2)    <---------ANAC58          ------>ZmHOX2a(1) --->At4g35610     <---------ANAC58          <----------DOF2                       <---------YAB1 ===================HOX2a_HOX2a    --------->ZAT6                   <---------AtLEC2      <---------AtLEC2 -RAV1(2)   --------->ARR11(3)   <-----------GT1    <-----------HVH21        <---------YAB1    ------   aggagaatctataagatcgaagcgtaccaagtttttcacactaagtcctttcaaggtcagaactgtgtttgcaaggtttgtcattgtcatttgcaaggag  4823600      --------->ATHB12     <---------YAB1     <---------AHL20(2)     --------->ICU4     <---------AHL20(1)    <---------TOE2(3)   --------->AHL20(2)     <---------HSFC1(2)  <---------AHL20(2)    --------->AHL20(1)     --------->HSFB2a(1) --------->AHL20(2)    <---------AHL20(2)      --------->HSFC1(2) <---------AHL20(2)    --------->YAB1   <---------AHL20(2)                                         <- <---------AHL20(1)    --------->AHL20(2)     ------->TEIL---------->DOF2    ----------->GT1       <- --------->AHL20(1) --------->YAB1    ------->TEIL  ----------->HVH21    ---------->DOF2     <------- ----->GT1   ----------->GT1<-----------GT1  <-----------GT1       <----------DOF2       <----------DOF2   taatataatgtttgatggtcaaaaattatattactccatgaatttatgaaccttctgacagaaagagagcttttctaaagggtatttatgtctttttaca  4823700   <---------ANAC58                                                                     ---------->DOF2   <---------ANAC58                                                          --------->TOE2(3)      < --------ANAC58                                                              --------->TOE1(3) <----- --------ANAC58                                  <-----------GT1             <---------DAG2    ------ ----GT1         *TSS   ---------->DOF2    ----------->GT1                <---------ALFIN1    -------   ggcttgcttcgagtggataatgtgagaaaagagcaaaacacaaaaatgaaaaaaccttcttctcttgtaactcgcacaaccttatcgagtgaaagaagat  4823800                              <---------GLK1(2)        ----------->GT1      <---------At4g35610        <---------ZAT6       --------->At4g35610                                                 <---      ----------->GT1        <---------ZAT2               <---------ARR14(2)           ------>MYB46(1) -----------HVH21   <------NtERF2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      ------>MYB83 ----ARR14(2)     <---------ANAC58        <-----------HVH21    ---------->DOF2        <---------ALFIN1 --->ARR14(2)     <---------ANAC58       <----------DOF2  --------->ARR14(2)         <---------MYB55(2) -->ATHB12        <---------ANAC46      <---------DAG2 --------->HSFB2a(2)           --------->MYB46(3)   tgggtcagtagtgaaaaatggcgtcgattgcagcttcttctacctttcactcgttttgcagaaccaaaagccctaatctttcttcgacccaccttcttcc  4823900                                                      <---------ARR14(2)                                            --------->LBD16                                            <---------RAP2.6(3)                                   <--                                           --------->ANAC58                                     <----                                           --------->RAP2.6(2)                                  <----                                           --------->ANAC58                                     -----          --------->TOE2(3)                --------->ANAC46<---------ANAC58                     -----          --------->TOE1(3)--------->AGP1 <---------LBD16  <---------ANAC58                  <------ZmHOX2a(1) -------DOF2    <----------DOF2--------->MYB52(1)     --------->ARR14(2)                   <---------TOE2(3)   tttgtcgaaaaacctcaactttcggaccagagctatcggaaatagccgcaattgcagttttgctgggtttataaaacaaaatcgccttggattgaggaag  4824000                                                 --------->ANAC58                                                 ------->GAMYB                                                 --------->ANAC46                                                --------->MYB46(3) <---------ANAC58                              -------->P <---------ANAC46               =================RAV <---------ANAC58               <-----------RAV1(1) --------DOF2                 <---------At4g35610--------->ANAC58 -----HSFC1(2)              <------NtERF2    --------->MYB46(3)                 <-----------HVH21 -----HSFB2a(1)           --------->ALFIN1<------ZmHOX2a(1)                     ------>ZmHOX2a(1) ---->HSFB2a(1)    <------ZmHOX2a(1) <-----------RAV1(2)                 <---------CCA1(2) ---->HSFC1(2)  <------ZmHOX2a(1)<-----------HVH21--------->LBD16      ------>ZmHOX2a(1)   ctttcgtctattggagaaggaggagaaggtgtcgctgtcgcagaggagcaaccgcaagagactgtctctgttcctgtctctccttcagacatgctcacca  4824100                                                                        <---------AHL20(2)                                                  <---------YAB1       --------->AHL20(2)     <------                                                  ------>ZmHOX2a(1) <----------DOF2      <---------WOX13(1)                                                 --------->TOE2(3) <---------ANAC58    <------ZmHOX2a(1)                          ----------->GT1    --------->YAB1        <---------ANAC58  <---------TOE1(2)           --------->REM1(1)                <---------YAB1    <---------ICU4  --------->ARR11(3)          <-------TEIL  <---------ZAT14   --------->YAB1  --------------->AGL15--------->CCA1(2)      --------->LBD16   --------->ZAT14  <---------YAB1   =================================MADS_MADS  <-----------GT1     <-----------HVH21  --------->ICU4   <---------ALFIN1 <---------------AGL15 <---   tgtttttccaggtacatcactctctgtccagtgaatttgtgtgattatcatcctcattctccacttatggctttttaatagatatagtaggattgattca  4824200  Previous    Next  AGI:  At5g14900.1    Description:  helicase associated (HA2) domain-containing protein. similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G62310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64445.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Helicase-associated region; (InterPro:IPR007502) Range:  from: 4822679    to: 4823584    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14910.1    Description:  heavy-metal-associated domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO14822.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) Range:  from: 4823717    to: 4825376    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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