Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->YAB1                                                          <---------bZIP60(1)                                                          --------->REM1(1)                                                         <------NtERF2                                                        ------>NtERF2                                                        ----------->RAV1(1)                                                       --------->DEAR3(1)                                                       ----------->HVH21                                                      --------->RRTF1(1)                                                      <------NtERF2                                                      --------->RAP2.3(1)                                                     <---------RAP2.3(1)                                                     ------>NtERF2<---------TOE2(3)                                                     <---------ORA47(2)                                                     <---------ERF1                                                     <---------DEAR4(2)                                                     <---------ATERF1(1)                                                     <---------RRTF1(1)                                                    <---------ANAC46<------ZmHOX2a(1)                                                    <---------DREB2C(2)                                                    <---------RAP2.3(3)                                                    <---------RAP2.3(2)                                                    <---------RAP2.6(2)                                     <------ZmHOX2a(1)--------->ATERF1(1)                               ----------->RAV1(2)  --------->ATERF1(2)                              --------->GLK1(2)     <---------ATERF1(2)<---------ARR14(2)                              ------->TEIL          <---------DEAR3(1) --------->ARR14(2)                             --------->ARR11(3)     <---------RRTF1(2) --------->GLK1(2)      --------->YAB1   --------->TOE2(3)            <---------RRTF1(3)--------->GLK1(1) -------DOF2         --------->GLK1(2)             --------->RAP2.6(3)<---------GLK1(1)        ------ -----ANAC58         <---------ARR11(3)      --------->ANAC58   <---------ATHB12     --------->ARR11(3) -----ANAC58         --------->ARR11(3)      --------->ANAC58 --------->WOX13(1)     <---------ARR11(3)   tttcacattcaaaataagagcaaaatcttaagaacctgaggaaggggaagcatggcggcgacatcaatgaggaaatctgtcttcaagtatctcatagcaa  4810500                              --------->AtMYB61           --------->ANAC58                          -                            ------>NtERF2                 --------->ANAC58                         <-                         --------->LBD16                 ------->TEIL                              --                  --------->At4g35610                  <---------SPL7                              --          --------->TOE2(3)------>NtERF2         --------->ANAC46                                 ---       --------->GLK1(2)--------->ANAC46        ------>ZmHOX2a(1)                                 <--   <---------HSFB2a(2)  --------->DEAR3(1) --------->GLK1(1)   <---------ARR14(2)                 <--   --------->HSFB2a(2)<---------At5g28300  <---------GLK1(1)   --------->ARR14(2)    <XXXXXXXXXXXXXXX --->WOX13(1)     --------->ZAT2      --------->ANAC46<---------MYB52(2)   --------->AtLEC2 ---------   tctctctagaatccataacaagctcaccgcgaccaaaaacacgagaactcctcgcgacgaacgcagttctgaatttcatgaaaatgtgcaagaggtggaa  4810600                                                                          --------->O2                                                                          --------->TGA1a                                                                       --------->DEAR3(1)                                                                       --------->DREB2C(2)                                                                       --------->DEAR4(1)                                                                       --------->At1g77200                                                                       =============MYC_MYB                                                                       ------->GAMYB                                                                       ----------->HVH21                                                                      --------->DEAR3(2)                                                                      --------->MYB46(3)             --------->ANAC46                                       <---------ALFIN1             --------->ANAC58                                       --------->AtMYB61             --------->ANAC58                                      --------->MYB46(3)            --------->SPL1(2)                                     --------->SPL7            <---------LBD16                                      <---------PCF5           --------->SPL1(1)                                    <---------SPL7          <---------ZAT14                                   --------->ANAC46          --------->ZAT14                                   --------->ANAC58       <------------------SPL14                             ===================MYC_MYB      ------>NtERF2                                         --------->ANAC58     --------->DEAR3(1)                                     <---------TGA1a -------->MYB52(1)                                          --------->O2  --------->ANAC58 --------GLK1(1)                          --------->At4g35610   --------->LBD16    ----------->GT1 ------->CCA1(2)                   --------->DEAR3(1)       <---------O2  --------->ANAC58 ------->GLK1(1)                 <---------RAP2.3(1)        --------->TGA1a<---------SPL7 ------>ARR11(3)                <---------DEAR3(1)          ========================bZIP_bZIP -------ARR11(3)       ----------->HVH21  <---------At4g35610 <---------LBD16--------->MYB52(1) -------ARR14(2)   ---------->DOF2<------NtERF2--------->ETT(2)--------->DEAR3(1)  <---------ANAC46 XXXXXMIR838--------->SPL7      <---------ANAC46          <---------ALFIN1<---------O2             <- >ALFIN1  <---------SPL7       --------->At4g35610      --------->CCA1(2) <---------TGA1a         <--   gatatcggcgactgtacggaagaaagtgacagtagcggcgaggctgatgtcgatggagagacacgccggaccaccgacgtaagggacgtagaaatagaaa  4810700                                                                                        ------>NtERF2                                                                                       --------->RAP2.6(2)                                                                                       <---------ATERF1(2)                                                                                       --------->ATERF1(2)                                                                                       --------->RAP2.3(3)                                                                                       --------->RAP2.3(2)                                                                                =====================                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)                                                                              <-----------ARR10                                                                              --------->GLK1(2)                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                                              <---------AGP1                                                                             <------ZmHOX2a(1)                                     <---------ANAC58                     <-----------RAV1(2)                                     --------->O2                  <---------LBD16--------->At4g35610                                     <---------bZIP60(2)         <---------SPL7 ------>ZmHOX2a(2) <--                                     <---------ANAC46          <---------ANAC58======================                                     <---------ANAC58          <---------ANAC58<------ZmHOX2a(2)-----                                ---------->DOF2     ----------->HVH21  --------->ARR14(2)      ======                                ===============bZIP_DOF       <---------At4g35610----------->HVH21---     <------ZmHOX2a(1)       --------->YAB1       <---------ANAC55(2)  <---------ARR14(2)      ====== ------>ZmHOX2a(2)    <---------TOE2(3) <---------MYB46(3)============================RAV<------NtERF2 =======================HOX2a_HOX2a  <---------TGA1a----------->TGA1   <-----------HVH21<---------RAP2.6(3) --------ARR14(2)     <---------TOE1(3)--------->ALFIN1   <-----------RAV1(1)<---------GLK1(2) <----- ----ZmHOX2a(1)  <------ZmHOX2a(1)   <---------O2 --------->ANAC55(2)--------->LBD16  --------->RAP2.3(1)   ggatcgaggaagagagcgaggattgaggtaatgagaaagacgtggttccaataggtgacgatgttgctgtccgggtccaggatctgatgccgccatagga  4810800                                             <---------DEAR3(1)                                             --------->ALFIN1                                             <---------ANAC46                                            <------NtERF2                                            --------->ATERF1(1)                                          <---------DEAR3(1)                                         --------->ATERF1(1)                                        <---------MYB46(3)                                       <---------AtMYB61                                   <------NtERF2                                   <---------ABI4(1)                                  ------>NtERF2<------NtERF2                                  <---------RRTF1(1)                                  <---------ORA47(2)                                  <---------ERF1<---------TOE2(2)                                  <---------RAP2.3(1)                                  <---------ATERF1(1)                                  <---------DEAR4(2)                                 --------->ATERF1(2)                                 <---------RRTF1(2)                                 --------->ALFIN1                                 <---------ATERF1(2)                                 <---------RRTF1(3)                                 <---------RAP2.3(3)                                 <---------RAP2.6(2)                      ------>ZmHOX2a(1)--------->ALFIN1                    ------>ZmHOX2a(2) <-------GAMYB                   <------ZmHOX2a(2)  <------NtERF2                  --------->AGP1 <---------DEAR3(1)<---------ARR14(2)     <---------ANAC46                  <---------ARR11(3) <---------DEAR3(2)                  <------NtERF2                  --------->ARR14(2)<---------AtMYB61                    --------->At4g35610                  <---------GLK1(2)--------->ATERF1(1)                --------->ATERF1(1)                  <---------ARR14(2)<---------DEAR3(1)           --------->ALFIN1                  --------->ARR11(3)--------->ALFIN1          --------->LBD16 =HOX2a_HOX2a   ----------->ARR10<---------DREB2C(2)          <---------HSFB2a(2) -------At4g35610<---------At4g35610<---------ANAC46          --------->HSFB2a(2) =HOX2a_HOX2a <---------MYB52(1) <---------RAP2.3(2)  <---------AtMYB61  <---------At4g35610    <---- ---->ZAT18  <-----------TGA1   <---------ABI4(1)<---------MYB46(3)<------ZmHOX2a(1)     <---------AHL20(2) ==========================HOX2a_HOX2a--------->ATERF1(1)    <---------HSFB2a(2)      --------->ARR14(2) ------>At4g35610--------->At4g35610<---------DREB2C(2)      <---------LBD16          <---------ARR14(2) =========================HOX2a_HOX2a<---------MYB46(3)     <---------LBD16      --------->MYB52(1) -ZmHOX2a(1) <-----------HVH21  --------->ATERF1(1)--------->ARR14(2) <------NtERF2 --------->LBD16   cgctgaattggctaccgtcagatcctcgatttgaggcggcggtggaggcggaggttatggtctccgggaggaggcagcggagagaccggattttattcat  4810900                                                                                       <---------TGA1a                                                                                       <---------ANAC58                                                                                       <---------ANAC46                                                                                       --------->O2                                                                                       <---------O2                                                                                       --------->TGA1a                                                                                       <---------ANAC58                                                                                     <-----------HVH21                                                                                    <---------ANAC58                ----------->GT1                                                     <---------ANAC46              --------->LBD16                                                       <---------ANAC58            <---------LBD16                                                      ================MYC_MYB          --------->GLK1(2)                                                      <--------P         <---------ARR14(2)                                                     =================MYC_MYB         <---------GLK1(2)                                                      <---------ANAC58         --------->ARR14(2)     --------->LBD16                                 <---------ANAC58        <------NtERF2         <---------LBD16                <---------WOX13(1) <-------GAMYB      <---------ANAC58      <---------ARR14(2)             --------->ATHB12    --------->MYB55(2)      <---------ANAC46      --------->ARR14(2)           <---------WOX13(1)    <---------MYB46(3)      <---------ANAC58     <---------ARR14(2)           <------------CBF       --------->MYB111(2)     <---------LBD16       <---------GLK1(2)          <---------TOE2(3)       --------->ALFIN1 <---------AtLEC2          --------->ARR14(2)         <---------YAB1        <------MYB46(1) -----At4g35610<---------MYB52(1) <----------DOF2 <------------CBF          <------MYB83 <---------ANAC46   cttccatggcggattccggtgttaaatcggattccgcattaacacagagagagattgagattgatggacagagaggctaggtggttgcgtcgtgtgattt  4811000                                                              <<<<<<<<<<E2Ff                                                              <<<<<<<<<<E2Fe                                                              <<<<<<<<<<E2Fa                                                              <<<<<<<<<<E2Fd                                                              <<<<<<<<<<E2Fb                                                              <<<<<<<<<<E2Fc                                     <---------TOE2(3)       --------->LBD16                                     <---------HSFB2a(2)    <---------ANAC46                                     <---------YAB1        <---------LBD16                                  --------->ICU4     --------->GLK1(1)                                  <---------YAB1     <---------GLK1(1)                                <---------ICU4      <---------ARR14(2)                               --------->ICU4      <------ZmHOX2a(1) ---------->ID1                <---------YAB1 <------ZmHOX2a(1)                    --------->AtLEC2   tttgtttttttgggtttttgcattttgtttttgatgattatggaagaaggagaggatttctcgcgggaaaactgagagaagggccatggaaataggggga  4811100                                                                  <---------MYB46(3)                                                                 <---------TOE1(2)                                                        --------->LBD16                                                 <---------YAB1 <---------MYB52(1)                                       --------->ANAC58<---------ANAC58                                       --------->ANAC58<---------ANAC58                                       --------->ANAC55(2)<---------ARR14(2)                                       <---------ANAC55(2)--------->ARR14(2)                                       --------->ANAC46<---------ANAC55(1)                 --------->ATHB12     <---------LBD16  <---------ANAC46                         ----- <--------P     <---------YAB1       <-----------GT1  <---------LBD16                        --------   agggtagtttttgaaaatatgatgggagaatgagggtatttacggaatgttatagttgcgggtctcgtttgtttatgctgtttttgtgttctcaaaacag  4811200                                                              --------->DEAR3(1)                                                              --------->MYB46(3)                                                              <---------MYB55(2)                                                             --------->DEAR3(2)                                                            ------>MYB46(1)                                                            --------->MYB52(1)                                                            -------->P                                                            ------>MYB83                                                           --------->MYB55(1)                                                           <---------ALFIN1                                                          <---------MYB55(2)          --------->At4g35610              xxxxxxxxxxxxxxxx>smallRNA(i)          <---------At4g35610        <-----------GT1      --------->MYB46(3)              -----------         ------->TEIL             <---------ARR11(3)      <---------ABI4(2)      ------>ZmHOX2a(2)  ------->MYC3                    --------->ARR11(3)    --------->PCF2         <---------ARR14(2)   <  <-------MYC3                    <-----------ARR10     <---------TCP20--------->YAB1     --------->YAB1 ---->At4g35610                   --------->ARR14(2)    <---------TCP15(1)     --------->ARR14(2)<--- -->DOF2<---------AtLEC2    --------->ANAC46      <---------MYB46(3)  <---------ATHB12   <---------ATHB12   cacacgttttgcatctcaaaacttcaatcgacacaatatctactgttcttagttgttggacccaccggcccaatagttatagatcggcccaatagttatt  4811300                                                                        <---------YAB1             <-                                                                       <---------AHL20(2)     <------      <----------DOF2                                                  --------->AHL20(2)    <-------   <-----------GT1                                                     --------->AHL20(1)   <-------- >GT1 <---------DAG2        ----------->GT1    <----------DOF2         <---------AHL20(1)   --------- -----------GT1         ---------->DOF2  --------->ARR14(2)    <-----------GT1             --------->YAB1 ------AHL20(2)  --------->YAB1    <-----------GT1  <------ZmHOX2a(1) --------->YAB1      <---------YAB1   tttttctactttttttctatgaaaatcaaagggatatatactatatatgctttaggattttaaaattacacattataatgtatacaattgctatgatcat  4811400  Previous    Next  AGI:  At5g14870.1    Description:  ATCNGC18/CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 18 (CNGC18) [Arabidopsis Thaliana] (GB:Q9LEQ3); similar to ATCNGC16 (cyclic nucleotide gated channel 16), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G48010.1); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC17 (cyclic nucleotide gated channel 17), calmodulin binding / cyclic nucleotide bindin Range:  from: 4808094    to: 4810900    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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