Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ZAT6           <-----------GT1           --------->MYB52(1)                                                    ---------->DOF2        --------->ANAC46                                                  <----------DOF2        --------->ANAC55(2)                                             ------>MYB83      <---------YAB1                                                    ------>MYB46(1) ----------->GT1                                                       <---------ALFIN1 <---------ZAT6          <---------YAB1                               --------->MYB46(3)    <-------- ------At5g28300       <---------At4g35610                        --------->MYB46(3)      ------->TEIL   acagtgttataagtaacagtatcgatgctgattactctatttctaagtaaactaattgcaaaactcaaacgacccactttgcaaaaagaatgaatcaata  4775300                                                                           ------>MYB46(1)                                                                           ------>MYB83                                                                         --------->AtMYB61                                     --------->YAB1                      <---------MYB111(1)                               --------->ANAC58                          --------->MYB46(3)                               --------->ANAC58                          <---------MYB59                          --------->ZAT14                     ----------->HVH21                        --------->ANAC46                    ----------------->AGL1                        --------->ANAC58                    <---------ANAC55(2)                        --------->ANAC58      --------->At5g28300 ------>ZmHOX2a(2)                      <---------ALFIN1       ----------->GT1--------->ANAC55(2)  ----------->HVH21  - -ICU4         <---------LBD16 --------->ANAC46  --------->WOX13(1)      <---------MYB46(2)       ---   cattgagagcaaaaacatcgggagacactccacaagctatcatcttgctgtaaatcagcgatacctgatcgtgtaccaaaccattgacattgaattgatg  4775400                                     ---------->DOF2                                    --------->LBD16                                   --------->ANAC46                                   --------->LBD16                               -------->P                             --------->MYB46(3)                         --------->LBD16                        --------->ANAC55(2)                        <---------ANAC55(2)                             --------->LBD16                        --------->ANAC46                               <---------ANAC46                        <---------HSFB2a(2)                        --------->ZAT2                        --------->HSFB2a(2)                        <---------At4g35610                       <---------LBD16    --------->ZAT14          <---------ZAT2                     --------->ARR14(2)   <---------ZAT18          --------->At4g35610         ------                     --------->GLK1(2)    --------->ZAT18     ------>ZmHOX2a(1)        <---------At4g35610 -------->YAB1       <---------ARR14(2)   <---------ZAT14    <---------ANAC58          --------->At4g35610 ---->TEIL      --------->ANAC46 ------->GAMYB               <---------ANAC58     ----------->HVH21   aatcagactgttccatagacgcgaatccggaacaaccccgaaagtgcacatcgcagagagcgtccttgctgctccgtagagtctctcacagcttaaatag  4775500                                                                 --------->HSFB2a(1)                                                                 <---------HSFC1(2)                                                                 <---------HSFB2a(1)                                                                 --------->HSFC1(2)                                                                <---------ARR14(2)                                                                <-----------ARR10                                                                ------->TEIL                                                                --------->ARR14(2)                                                     <---------ARR14(2)     ----------->HVH21                                                     --------->ARR14(2)   <---------ANAC58                         --------->ANAC58        <-----------------AGL3   <---------ANAC58                         --------->ANAC58        <-----------------AGL2   <---------ANAC46                         <---------ANAC46--------->ATHB12       <---------ARR11(1)                         <---------ANAC55(2)    --------->At4g35610    <---------MYB52(1)  ---------->DOF2        ----------->GT1<---------YAB1         <---------CCA1(2)------>ZmHOX2a(2)   < ---->DOF2               --------->ANAC55(2)  <------ZmHOX2a(1)<---------ARR14(1)                   <   agccgaaagagagtatggaagagagagacgtaaactctagtcttgataggagctaaatctgggtcgaatcttcgttgtgtgatcgagaggctagtctctt  4775600                                                                                                    -                                                                                                   <-                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                              -------                                                                   <---------At5g28300        <------        <---------ARR14(2)                                         <-----------GT1            <------        --------->ARR14(2)        ---------->DOF2        --------->ARR14(2)                  <-------    --------->HSFB2a(2)         ---------->DOF2          <---------ARR14(2)               ------>ZmHOX2a(1)    <---------HSFB2a(2) <---------WOX13(1)          <------ZmHOX2a(1)                    --------->TOE1(3)   <---------LBD16    --------->ATHB12  <------NtERF2    --------->GLK1(2)               --------->TOE2(3) ----------DOF2      <---------YAB1    --------->RAP2.6(2)        <-----------GT1     --------->ARR14(2) ---------DAG2   <---------MYB46(3)  --------->At4g35610<---------GLK1(2)             <---------ARR14(2)   cgctttctgggatttggggtcgtttgattgacgagaaagagcggcaatttgagaggaagaatctgtatttacccttatagttattccaaatccttatcat  4775700                                                                                  <---------bZIP60(2)                                                                                  <---------bZIP60(1)                                                                                  <---------O2     <---------At4g35610                                                          --------->bZIP60(1)     --------->At4g35610                                                       ----------->HVH21  --------->At4g35610                                                  --------->ATERF1(1) -------->YAB1                                                        <---------SPL7 --------YAB1                                                        <---------ANAC58 ------ICU4                                                          <---------ANAC58 -----YAB1                                                           <---------ANAC46--------->ANAC58 ---->ICU4                                                           <---------RAP2.6(2)------->TEIL -->YAB1             <-------TEIL            --------->LBD16<---------ARR11(3) ----------->TGA1   --- --HAHB4           <---------GLK1(1) <<<<<<<<<CBP60g      --------->ANAC58 <---------ANAC58      <--- ---ICU4     <------------CBF        <<<<<<<<<SARD1       --------->ANAC58 <---------ANAC58      <--- --YAB1     --------->ATHB12 <---------ARR11(3)       ------>ZmHOX2a(1)<------NtERF2 --------->ANAC58   tatcatcagcagatagattggagttcatctaaatctccaaatttctccagagactcctgcaagctctcatggcgtctgcttgtgacgacgcatcgttttc  4775800                                                          --------->ANAC46           ------->GAMYB                                                          =====================bZIP_DOF                                                          --------->O2              --------->MYB46(3)            ---------->DOF2                               <---------O2            --------->MYB52(1)      ----------->GT1                                     <---------TGA1a         <-----------GT1    <---------At4g35610                                   --------->bZIP60(2)     <---------ICU4    --------->At4g35610                                   ===================================MYC_MYB  <---------ZAT14                               <------MYB46(1)                <---------ICU4  --------->ZAT14               ------>NtERF2   <------MYB83                   --------->YAB1  --------->ZAT18              ----------->HVH21----------->GT1               <---------ATHB12 ------>LBD16                  --------->DEAR3(1)         --------->TGA1a     <---------ATHB51 --------RAV1(2)         <---------ZAT2        --------->MYB46(2)         ------------>CBF     <----- ------HSFB2a(2)         --------->ZAT2        --------->MYB59      ---------->DOF2--------->RAP2.6(3)   caggtgaactgagaaaaagagtttcgaagctcgacgacgaggtttaagttcggtaataccacgtcgttttaaaagactcaataataacggccctaaatac  4775900                                                                                       --------->GLK1(2)                                                  --------->YAB1                       <---------ARR11(3)                                           --------->TOE2(3)                   <---------LBD16                       --------->YAB1    <---------TOE1(3)                   <---------GLK1(1)      -                   >>>>>>>>>RAP2.2       <---------TOE2(3)                  <---------ARR11(3)      -                 <---------ARR11(3)     <-----------GT1                     --------->ARR11(3)   ----                <---------CCA1(2)  <---------ARR11(3)                   --------->CCA1(2)      <----- --TEIL       <----------DOF2   ----------->RAV1(1)               <---------ANAC46     --------->ARR11(3)   atgggctgtttttgggctatatctaaaataagcccaacatattaacgtttaaacatatttcatacatttcggagataagatttcggaaaaatctatttca  4776000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <x                                                                                           <xxxxxxxxx                                                                                           --------->ATHB51                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                        --------->YAB1                                                                                     <xxxxxxxxxxxxxxx                                                                                 <-----------GT1   <x                                                                                --------->ZAT14  <xxx                                                                                <---------ZAT14 <xxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <---------DAG2   xxxxx                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            <-----------GT1<---------ICU4                                                                           <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            --------->AHL20(2) <----------DOF2<xxxxxx                       -------->HAHB4                       <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx        <---------ANAC46                                   <---------AHL20(1) <xxxxxxxxxxxxxxxxxxxxxx       <---------LBD16 --------->YAB1                      --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx -------->ANAC58       <---------ICU4                      --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxx -------->ANAC58      <---------ATHB51           <----------DOF2     --------->DAG2  <xxxxxxxxxxxxxxx ----->ANAC46         --------->ICU4             <---------DAG2     ---------->DOF2<---------YAB1xxxx ------GT1          --------->YAB1        <-----------GT1  <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxx   cgacgctatttcggagatagattaataatgggttaagttgcaaattactcacttttctaaatttaatttgaaaagtagtcactttactattcataatttg  4776100                                         <---------ZAT18                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------------------->WRI1 --------->ZAT18              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------DAG2 --------------->AtSPL3         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC46      <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------------->AtSPL8                              <---------DAG2 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------------AtSPL8                          <xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ZAT18 xxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ZAT18 xxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ZAT14 xxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->ZAT14 xxxxxxxxxxxxxsmallRNA(si3) <---------ZAT18                                        <---------ZAT18  < xxxxxxxxxxxxxsmallRNA(se3) <---------ZAT14                                        <---------SPL7   < xxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------------->AtSPL8 xxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------->TEIL   xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxx xxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)- xxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ANAC46     - >smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<----------DOF2 xsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ZAT14        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ZAT18     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT14     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxx xxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ZAT6<---------AHL20(2)  --------->ANAC46   caaaatagtcacttttcactgtttgattcgtacacttagattgtacaccatttttagtgtacagatgtatataaaaaatacacagcgtacactttacatt  4776200  Previous    Next  AGI:  At5g14770.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66681.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62287.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4772884    to: 4775700    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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