Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------>MYB46(1)                                                                ------>MYB83                                                              <---------MYB59                                                              <---------------AGL15                                                              --------------->AGL15                                                             ----------------->AG                                                             ----------------->AGL2                                                             ----------------->AGL1                                                             ----------------->AGL3 <-----------TGA1                                          --------->CCA1(2)                       -- <-----------HVH21       --------->ANAC46                 --------->ARR11(3)                       -- -------->bZIP60(2)     --------->LBD16                   <---------ARR11(3)                      --- -----GT1    ----------->RAV1(2)                      ---------->DOF2                     <---------ANAC46   cctcgtcatttcatcgcctgaatttccacaaaatataaacaaattagaaacattctcaaagataccaaattcagtaagaacataaacaaatgacttatac  4706300         <---------ATHB12       --------->WOX13(1)                             --------->LBD16     <---------ATHB12                                <---------ANAC46     --------->MYB46(3)                             --------->ZAT18                                 -    ------>MYB83          <------ZmHOX2a(2)         <---------LBD16   ------>MYB46(1)           -----    ------>MYB46(1)       ======================HOX2a_HOX2a  --------->GLK1(2)                -------    --------->ANAC46--------->TOE1(2)             <---------WOX13(1)  ------>MYB83      --------->GLK1(2)    -------->P<---------HSFB2a(2)               --------->ATHB12 <-----------GT1       <---------ARR14(2) ---->MYB83  <---------LBD16             <------ZmHOX2a(1)   <-----------ARR10         <---------GLK1(2) ---->MYB46(1)--------->HSFB2a(2)      --------->ANAC58     <---------GLK1(2)          --------->ARR14(2) ------>WOX13(1)   <---------HSFC1(2)  --------->ANAC58 ---------->DOF2               <------ZmHOX2a(1)   caatccaaccaattatctggaaactacgatcaaatgtaagtaaggaacactgattgcgcaaagaatctcaccatccatttcaacgataggattctgaacc  4706400                                                                                    ---------->DOF2                                                                                  <---------HSFB2a(2)                                                                              <---------ARR14(2)                                                                         --------->ANAC58                                                                         --------->O2   --------->ANAC58                                                                         --------->ANAC58               ----------->RAV1(2)                                       --------->ANAC46             --------->DEAR3(1)                                          <---------ANAC55(2)            --------->MYB46(3)                                           --------->ANAC55(2)            --------->DEAR3(2)                        ------->TEIL       <---------O2   --------->ANAC58          --------->ARR14(2)             ----------->HVH21             <-------------DYT1          <---------ARR14(2)           <---------At4g35610           <-----------HVH21  --------->ANAC46 -------->GLK1(1)      --------->ANAC58--------->At4g35610         --------->DAG2 --------->HSFB2a(2) ---->TOE2(3)------->GAMYB           --------->MYB46(3)           ---------->DOF2 ------>ZmHOX2a(1) - >TEIL --------->YAB1  --------->ANAC58----------->RAV1(2) --------->MYB52(1) --------->ARR14(2)    <   tgaattctatcagaaccgcctgaagaagcaaaacatcgaacagctgatgcgcgatgaaactgaacgggaaaagtcacgcgattcctcgaagcgccactag  4706500                                                                                              <------                                                                                              <------                 --------->GLK1(1)                                                            -------       --------->LBD16                                                                   --------->ANAC58     <---------LBD16            --------->MYB52(1)                                       --------->ANAC58    --------->MYB52(1)         --------->TOE1(2)       <---------MYB46(3)                --------->ANAC46  <---------ARR14(2)          <---------MYB52(2)      <---------AtMYB61               <------NtERF2  --------->KAN4(2)         --------->MYB52(1)    --------->At4g35610         --------->ALFIN1------- --------->KAN4(1)      <---------------------WRI1--------->ZAT2             <------NtERF2   -------- <---------KAN4(1)   --------->HSFB2a(2)          <---------ZAT2            <---------MYB46(3)<------ <----------TaMYB80  <---------HSFB2a(2)          <---------At4g35610      <---------DREB2C(2)<------ --------->TaMYB80--------->ARR11(3)             ----------->RAV1(1)       <---------ANAC46<---------SPL7 ---------KAN4(2)<---------GLK1(1)          ---------->DOF2                <---------DEAR3(1)<-------TEIL   agaatataccggaactaagaaatctcgaagaaacgaacgaagacgataaaccagcagaggttgaagaagataacatggcggtgaggctggcacggtacgt  4706600         <---------ANAC58         <---------ANAC46      <---------SPL7     <---------ANAC46     <---------ANAC58                                                                          <-----     <---------ANAC58                                                                          <-----     --------->DEAR3(1)                                                                       -------  --------->ANAC46                                                                            <------ ---ANAC58                              --------->TOE2(3)                               <----------DOF2 ---ANAC46                              --------->AtMYB61                             <---------At4g35610 ---->GT1<---------ANAC58    --------->LBD16                                   --------->GLK1(2)<---- -->ANAC55(2)          --------->At4g35610                                     <---------ARR14(2) ->SPL7--------->ALFIN1<---------At4g35610    ------->GAMYB                    --------->ARR14(2)<--- ---ANAC55(2) --------->At4g35610    ------>NtERF2                             ------->TEIL   ------- ---ANAC58    <---------At4g35610   --------->DEAR3(1)          <------ZmHOX2a(2)     --------->At4g35610   gaaaacgccgtgcgtgagcttattcagcatccgagactccgacctcaacccaaactctcaacttcgatcactgaatcagtgaatctgcagctttcggtcg  4706700                                                            --------->ANAC58                                                            --------->ANAC58                         <---------At4g35610           --------->DAG2                         --------->At4g35610    --------->LBD16                         --------->ZAT2     --------->GLK1(2)                     <----------CDC5        <---------ARR14(2) ----ETT(2)       --------->ZAT18           --------->ARR14(2) ----DEAR3(1)     <---------ZAT14         --------->HSFB2a(1) -->SPL7          --------->ZAT14        *TSS  <---------LBD16 ---ORA47(1)    <---------ZAT18    <---------ICU4     ---------->DOF2 -----DEAR3(2)  --------->ZAT18    -------->HAHB4    ---------->DOF2 ---NtERF2 ---------->DOF2        --------->ICU4------>NtERF2                        <---------ANAC46 -->RAP2.6(3)   --------->ZAT14 --------->YAB1<---------LBD16----------->GT1---------->DOF2 <--------   gcaagtttattgctaaagtgtgctctgagctctctaataatcgacgattccggcgaaaaggcaaggtaaacaagaaggaaaagagagccgtatagattat  4706800                                                                              --------->ARR14(2)                                                                      --------->HSFC1(2)                                                                      <---------HSFB2a(1)         <--                                                                      --------->HSFB2a(1)         <--                                                              <---------DEAR3(2) ----------->GT1 <---                                                            <---------LBD16   <---------ARR14(2) <---                                                        --------->GLK1(1)     --------->GLK1(2) <----                                                        <---------GLK1(1)    ------>MYB83       <----                                                       <---------ARR14(2)    ------>MYB46(1)   <-----                     ----------->GT1                   --------->ARR14(2)  <---------MYB59     <-----               --------->DAG2                        --------->LBD16  <---------HSFC1(2)    <--------              ---------->DOF2          ----------->TBP <---------GLK1(2)  ----------------->AGL1<---- -GLK1(2)----------->RAV1(1)  <-----------GT1      <---------LBD16   <---------TOE1(2)    <---------SPL7   ttcagtaggcccaacataaggcccagtaaatttttctgtctatataaacccaaaccggatttgccggttcgaaggtaccaaatctgtaatatggtccggt  4706900  ------------>CBF ----MYB83 ----MYB46(1) ------MYB46(3) ------AtMYB61 -----MYB55(1) -----MYB52(1) ----MYB52(1) --GAMYB                      ---------->DOF2 -LBD16                  ---------->DOF2          <---------TOE2(3)   <-----------HVH21 ----P              ----------->GT1             *TSS          <----------DOF2                   -----   tggtctcaatgtccgatttgatttgaaaaaaggaaagcgaaaaccctacttagaggttttatttctttgtctggtcagatttattgttcttccttctcac  4707000                                                      --------->KAN4(2)       <-----------GT1                               <---------KAN4(1)    <---------ICU4               --------->ARR11(3)  <---------ICU4                      <---------ZAT6   <---------YAB1         --------->ZAT2 <----------DOF2   ------>ZmHOX2a(1)      ---------->ID1   --------->ICU4         --------->At4g35610       --------->ICU4               <-----------GT1  --------->TOE2(3)       <---------At4g35610    <---------YAB1            ---------->ID1----------->GT1 ---->ANAC46 <---------ALFIN1    <---------ARR11(3) <---------YAB1       <-----------RAV1(1)  <------   aaaacattattacccaaactccattatcagctcaagttcttagctttcttcgtgattattcctctgtgagtatttctgtcgtttttcgctattgttaaac  4707100                          <---------ZAT2                     --------->HSFB2a(2)                             --------->AHL20(2)              <-----------GT1                                        <---------AHL20(2)          <----------DOF2 --------->ZAT2  <------MYB83        <----------DOF2                     <--        <---------At4g35610          <---------YAB1    <-----------GT1  <---------AHL20(2)        ===   <----------DOF2   <---------HSFB2a(2) --------->MYB59<-----------GT1 --------->AHL20(2)        === -----GT1 <---------DAG2 --------->GLK1(2)<------MYB46(1)  --------->ANAC46                     -----   tgtttctttcagctttttatcttatagaagctggtaattgtgtttggttccagttttttacccgcttgtattaaaaaattgtgtctcttcgttgaagtta  4707200  Previous    Next  AGI:  At5g14590.1    Description:  isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative. similar to ICDH, isocitrate dehydrogenase (NADP+) [Arabidopsis thaliana] (TAIR:AT1G54340.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G65930.1); similar to NADP-specific isocitrate dehydrogenase [Lupinus albus] (GB:BAC77065.1); similar to isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] (GB:CAA65504.1); similar to isocitrate dehydrogenase (NADP+) [Nicotiana tabacum] (GB:CAA65503.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); c Range:  from: 4703301    to: 4706741    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14600.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO14741.1); contains InterPro domain tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816) Range:  from: 4706948    to: 4709146    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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