Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->CCA1(2)                                                           --------->ARR14(1)                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                          --------->ARR11(1)                                                         <------NtERF2                                                        <---------MYB46(3)                                                       <---------ANAC46                                                      <---------At4g35610                                                      --------->ATERF1(1)                                                      <------NtERF2                                                      <---------LBD16                                                     ------>NtERF2                                                     <---------RAP2.6(1)                                                     <---------ATERF1(1)                                                     <---------RRTF1(1)                                                     <---------DEAR4(2)                                                     <---------ERF1                                                     <---------ORA47(2)                                                     <---------RAP2.3(1)                                                    <---------RRTF1(3)                                                    <---------RRTF1(2)                                                    --------->DEAR3(1)                                                    <---------DEAR3(1)                                                    <---------ATERF1(2)                                                    --------->ATERF1(2)                                                    <---------RAP2.3(3)                                                    <---------RAP2.3(2)                                                   --------->ATERF1(1)                           <---                                                   <---------ABI4(1)                             <---                                                  --------->LBD16                              ------                                                  ------>NtERF2                               -------                                                  <---------RAP2.3(1)                       <--------                                                  <---------ATERF1(1)                       ---------          <---------ANAC58                       <---------LBD16                          <------ZmHOX2a(1)          <---------ANAC58                       <---------RAP2.3(2)             <---------AtMYB61  --------->PCF2                                <---------LBD16               --------->ALFIN1-------  --------->TCP16(1)                          <---------ARR14(2)        <------NtERF2  <------NtERF2  --------->PCF5                              --------->GLK1(2)  <---------MYB46(3)  <---------DEAR3(1) <---------TCP16(2)              <------NtERF2--------->ARR14(2)--------->ALFIN1 <---------TOE2(3) ------->ALFIN1               --------->ATERF1(1)<---------RAP2.6(2) <------NtERF2 <-----------HVH21   agtggtcccatagcgaggcgagagaagatggagccagcgaaggaagcgattccggcggcggatacggtggaggcagagaggttgaggtcggaggagatga  4696700         <------ZmHOX2a(1)    <-----------RAV1(2) ------>NtERF2                                                ----------->HVH21 <---------PCF5                                             <------MYB83 ------ANAC46                                               <------MYB46(1)       <---------ANAC58 ------bZIP60(2)                                        --------->ZAT2            <---------ANAC46 --->MYB52(1)                                           --------->STY1(2)      --------->ALFIN1 ---->TGA1                                              <---------STY1(2)    --------->ALFIN1 -At4g35610                                             <---------ZAT2<-------TEIL<---------ANAC58 >At4g35610             --------->ALFIN1               --------->ANAC58--------->TGA1a ---->HVH21          --------->DAG2                    --------->ANAC58<---------TGA1a<------ZmHOX2a(1)   cggggaccagaggagggatggagaaggtggagaagaagcatgagaagagtgagagccaagctaggtgaaaggctcgtgagtgtggcgaggagagagagaa  4696800                                                                    <-----------RAV1(1)                                                                    <---------REM1(1)                                                                  <---------ANAC46                                                                  <---------ANAC58                                                                  <------MYB46(1)                                                                  <------MYB83                                                                  <---------ANAC58                                                                 <---------MYB46(3)                                                                 <---------AtMYB61                                                                 --------->MYB111(1)                                                               <---------MYB52(1)                                                             <---------DEAR3(2)                                                             <---------MYB46(3)                                                             --------->MYB55(2)                                                            <---------DEAR3(1)                                                           <------NtERF2  <-------GAMYB                     --------->MYB52(1)                   <---------RRTF1(1)                    --------->AtMYB61                     <---------ERF1 <---------ANAC58              <---------ANAC58                            <---------RAP2.3(1)              <---------ANAC58                            ------------>AtMYB77             <------NtERF2                                ------>NtERF2  <---------ANAC46            --------->MYB55(2)                           <---------DEAR3(1)            <---------MYB46(3)    --------->LBD16        <---------RAP2.3(2)            ------>NtERF2        <---------LBD16         <---------RAP2.3(3)           --------->ALFIN1      ------->GAMYB           <---------RRTF1(3)           <---------DEAR3(1)   <---------LBD16        --------->MYB52(1)<---------ANAC58        <---------DEAR3(1)     -------->P     --------->At4g35610--------->MYB46(2)            <----- --------->ETT(1)  --------->MYB46(3)        --------->GLK1(2)<-------GAMYB    <---------At4g35610   tggtcggaagacggtggctcgaccatcggaatcaaccgggatagtggaatctgaaaacgacggcggtttggtgttgcgttgagatggctccattactctc  4696900                                              <---------ATHB12                                            --------->WOX13(1)                                          <---------ATHB12                                        --------->WOX13(1)                                      <---------MYB55(2)                                      --------->MYB46(3)                                     --------->ANAC58                                     ------>MYB46(1)                                     --------->ANAC46               <---------ARR11(3)                                     --------->ANAC58               --------->ARR11(3)                                     ------>MYB83                  <---------CCA1(2)              ------>NtERF2        <---------ALFIN1      <----------DOF2            <---------AHL20(2)             --------->WRKY12     --------->MYB46(3)   <---------YAB1  <----------DOF2             ----------->TGA1  --------->ANAC46       --------->ARR11(3)            --------->AHL20(1)             ----------->HVH21 --------->ANAC58  ------->TEIL    --------->AHL20(2) <---------AHL20(1) <-----------------------TaNAC69(2)--------->AtMYB61  <---------ARR11(3)  --------->YAB1       ------ ----LBD16 --------->At4g35610 --------->ANAC58--------->YAB1    <---------AHL20(2) --------->AHL20(2)   ggagaagaaaactcgctgacgactcttacttacacgaccacccaatcaatgaacattatctttgaatttaaatctttcatgaacaataaaatgactcaga  4697000                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                         --------->TOE1(3)                                              <---------ANAC58                         --------->TOE2(3)        --------->YAB1                        <---------ANAC46                 <---------ANAC46                <---------ATHB12                *TSS   <---------ANAC58    <----------DOF2      --------->YAB1        --------->WOX13(1)               <---------CCA1(2) --->At4g35610<----------DOF2           ---------->DOF2----------->GT1       ------>ZmHOX2a(1)-------   ggcaaacttttggcaactttcgagtaatcttaattcaaacccaaatgctcaatcaaaatgtgaaattcaattttagttcctcgtctcttggcttaaatta  4697100          <------------CBF       ------------>CBF     <---------O2                                            --------->ARR11(3)     --------->bZIP60(1)                                    --------->CCA1(1)     --------->O2                                         --------->YAB1     <---------bZIP60(1)                                  --------->AHL20(2) -----AHL20(2)                              <---------AHL20(1) ----AHL20(2)                               --------->AHL20(2)                                     <- ----AHL20(1)                               --------->ARR11(3)                        <---------ANAC58 --->AHL20(1)                               <---------ARR11(3)                        <---------ANAC58 --->AHL20(2)             ----------->GT1   <---------AHL20(2)               <------------CBF  <----- ---AHL20(2)           ------->TEIL         --------->AHL20(1)  --------->WOX13(1)    <---------ANAC46 -->AHL20(2)<---------MYB46(3)             --------->AHL20(2)<---------ARR11(3)      <-------TEIL  ==   atttttgacgtcaattgttgaaatgaatttgtaatttagaagaaaatatattcggacaaataatatctatcaagaatgccattgggatgcgtagtttcta  4697200                                                                                        <-----------HVH21                                                                                        ------------>AtMYB77                                                                                        <-----------TGA1                                                                                       --------->TGA1a                                                                                       --------->ANAC58                                                                                       <---------O2                                                                                       ==============                                                                                       --------->O2                                                                                       --------->bZIP60(1)                                                                                       =============MYC_MYB           <---------O2                                                                --------->ANAC58           ===========================bZIP_DOF                                   <-----------HVH21           <---------TGA1a                                                      =================bZIP_DOF         ------>NtERF2                                                          <----------DOF2         <---------RAP2.6(3)                                                   <---------DAG2        --------->DEAR3(1)                                                   ------->TEIL--------->TGA2(2)      --------->At4g35610                                                 --------->ANAC58      ------>NtERF2                                                       --------->ANAC55(2)      <---------ATERF1(1)                                              <---------MYB52(1)<---------MYB52(1)   <---------At4g35610     <----------DOF2                           <---------ANAC58  <---------bZIP60(1)   --------->At4g35610    <---------ANAC58                  <---------YAB1<---------ANAC55(2)   --------->ZAT2         <---------ANAC58                --------->YAB1  --------->ANAC58 --------->MYB52(2) ---------DOF2         ---------->ID1           <----------ID1 ------->TEIL <---------ALFIN1<-------GAMYB ----CCA1(2)         <-----------RAV1(1)   --------->ICU4--------->ICU4<---------SPL7  <---------TGA1a ====================bZIP_DOF         ----------->GT1  --------->YAB1<---------ANAC58  --------->ANAC46   tctttagctgccgacttgggtttttggtgcttttgtatttttgtaaaaattggacaaaaatgatgaaacttgcgttacgcacctttcagacgtcagttac  4697300                                                                                                    -                                 --------->ANAC46                                                   -                               <---------HSFB2a(2)                                                 <-                            <---------TCP20--------->LBD16                                         <-                            --------->ARR14(2)   ---------->DOF2                                   <-                            <---------ARR14(2)  --------->AHL20(2)              ---------->DOF2   <--                      <----------DOF2      ----------------->AGL3   --------->ANAC58              ---                --------->ANAC46--------->LBD16<---------ATHB12     --------->bZIP60(2)         <---- ================================bZIP_DOF --------->ANAC46          --------->ANAC58  ---------->DOF2   taagacactaaacaatacaatccactttcggttccacaaaacccccccaataaaagagaaacaaaatggcacatcacaaggccaaagtaaaagactagtt  4697400         <-------TEIL    ------->GAMYB ------>MYB46(1)                                                        ---------->DOF2 ------>MYB83                                                --------->ARR14(1) --------->MYB52(1)               ------>NtERF2              --------->CCA1(2) ---------->HVH21                --------->bZIP60(1)        <---------ARR14(2) -------->MYB55(1)            ----------->HVH21             --------->ARR11(1) --------MYB111(1)            ----------->TGA1              --------->ARR14(2)   --------->MYB52(1) --------MYB46(2)     ------>ZmHOX2a(1)   ------->TEIL      <---------ARR11(3) <---------MYB52(2) --------MYB59  <---------ANAC58 --------->ANAC58           <---------GLK1(2) <---------At4g35610 -------ANAC55(2)    --------->TOE2(3) <---------ATHB12     --------->ARR11(3)--------->At4g35610 ------>ANAC55(2)<----------DOF2 --------->ANAC58         ----------->ARR10   --------->ZAT2   ------ -------GT1     <---------ANAC58 <---------bZIP60(1)  -------->P--------->At4g35610      <---------CCA1(2)   acctaaccgagttcattagctttcctcaagttgtgacgccaatgaatctatccatctaccaagatttgctcaccaaaagcagctaacgagcatctcttga  4697500         ----------->GT1         --------->YAB1        <---------YAB1       --------->SPL7     --------->LBD16    <---------ANAC58    --------->ANAC55(2)    <---------ANAC46    <---------ANAC58    <---------ANAC55(2)               <---------TOE2(2)    <---------ANAC55(1)               <---------TOE1(2)   ------>ZmHOX2a(2)      --------->YAB1                  <---------ALFIN1 ----------->GT1      -----  <------ZmHOX2a(2)     --------->ANAC46               --------->ANAC46  <-------GAMYB     ---------- <---------ARR14(2)     --------->AtLEC2            ------>ZmHOX2a(2)<---------MYB52(1) <---------HSFB2a(2) --------->ARR14(2)     --------->ANAC58        <---------YAB1    ------>ZmHOX2a(2)     --------->HSFB2a(2) --->ATHB12             --------->ANAC58   ------>ZmHOX2a(2)    <---------ARR11(3)     --------->REM1(2)   ttcgatccgtatgataaaaacatttcaagcaaaactctcgtatgatccatatgatcgactccacatgatcccttgggttgaaaaaaccttgtagaaagga  4697600  Previous    Next  AGI:  At5g14565.1    Description:  MIR398C; miRNA Range:  from: 4694629    to: 4697016    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g14570.1    Description:  ATNRT2.7 (ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.7); nitrate transmembrane transporter. similar to ATNRT2.5 (NITRATE TRANSPORTER2.5), nitrate transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G12940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14727.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 4695087    to: 4697081    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14580.1    Description:  polyribonucleotide nucleotidyltransferase, putative. similar to RIF10 (RESISTANT TO INHIBITION WITH FSM 10), 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G03710.1); similar to hypothetical protein OsI_007938 [Oryza sativa (indica cultivar-group)] (GB:EAY86705.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14733.1); similar to putative polyribonucleotide nucleotidyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD21450.1); contains InterPro domain Polyribonucleotide nucleotidyltransferase; (InterPro:IPR012162); contains InterPro domain K Homology; (InterPro:IPR004087); con Range:  from: 4697243    to: 4703087    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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