Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->ALFIN1                            <---------ANAC46                            <---------TGA1a                            <---------bZIP60(2)                      <<<<<<<<<<<<<<<<<LFY            <---------ATHB12<---------O2                             >>>>>>>>>>>>>>>>>LFY          --------->WOX13(1)=======================================bZIP_DOF    <---------RVE1(1)        ------------>CBF  <---------ZAT14                       --------->ZAT6 <---------CCA1(1) ----------->GT1    <---------ZAT2                              <---------ALFIN1   <---------AHL20(2) ------ANAC46       <---------At4g35610                  --------->DAG2       --------->ARR11(3) ------ANAC58      <---------AGP1<---------PCF2         ---------->DOF2       <---------ARR11(3) ------ANAC58    ----------->ARR10                   --------->TOE2(3) <---------ALFIN1            <-   agtgtgtaaaatcaatgagtagagctggtgaagtgggcctctctctctgattttttcttaaagcgaacacttcccactgggatattttaagcccggtcca  4694200                     --------->AHL20(2)                     <---------AHL20(2)                  <---------AHL20(2)                <---------YAB1              --------->YAB1              <---------ICU4                   <-----------GT1                                      <              -------->ATHB1              <---------AHL20(2)                         --------->AHL20(2)             --------->AHL20(2)    <---------DOF5.7(2)                               <---------AHL20(2)             --------->ICU4      --------->DOF5.7(2)                          ----------->GT1       -             <---------AHL20(2)  <---------MYB52(1)                           <---------ANAC58      <       --------->ANAC58         --------->TOE2(3)                             <---------ANAC46  <----       --------->ANAC58    <----------DOF2--------->AHL20(2)                  <---------ANAC58  ----- --------ICU4<---------ATHB51   --------->TOE1(3)    --------->GLK1(1)       <-------TEIL<---------ICU4   attcttacccagcaaattattattttattcttttcgttaactatttttttaacagaattcaaaatttacagaaaactggttcgtgaaataaatatcacag  4694300                     <-------MYC2                     ------->MYC3                     <-------MYC3                     ------->MYC2                     <-----------HVH21                      <---------ANAC58                    --------->TGA1a                         <---------ANAC58                    <---------O2                           <---------TOE2(3)                    <---------TGA1a                      ----------->HVH21        --------->YAB1--------->ALFIN1         --------->TOE1(1) ---------ZAT6      --------->ANAC55(2)        --------->TOE2(1) ---------->GT1     ==============================================bZIP_DOF ---------ANAC46    <---------ANAC55(2)       --------------->AtSPL8                            <---- -----ZAT14         --------->ANAC46          ------>ZmHOX2a(1)                                <----- ---->ZAT14         --------->O2       <---------ALFIN1<----------DOF2               <----------DOF2   tagtgtgaaataataaacaaacacgtgagggcatctttggaacacttcctagtacctctttgacgttccaactagtacaaaactcgcctttgtactactg  4694400                                                                                                    <                                          <---------ZAT14                                     -------                                          --------->ZAT14                                    <-------                                          <---------ZAT18      <---------YAB1          <---------YAB1                                 <---------ARR14(2)    <------MYB46(1)              <---------ARR14(2)   <---------------AtSPL8        --------->ARR14(2)    <------MYB83                 ------->TEIL----- -------HVH21      <---------AHL20(2) --------------->AtSPL8   <---------AHL20(2)   --------->ARR14(2) ----ZAT6   --------->YAB1 --------->WOX13(1)   --------->GLK1(2)        ---------->DOF2  ------->TEIL   tcagagaagtacaatgttgatttttttgtaaatcagtttcgcagtacacaattctgtaggttttttttattgtactaaagaaaacgtatatgaatgcaac  4694500                             <---------ZAT18                             --------->ZAT14                             --------->ZAT18                            <---------ANAC46                            <---------ANAC58            <---------ZAT18             --------->MYB55(2)                         <---------ZAT14             --------->MYB52(2)                         --------->ZAT14    <---------YAB1    --------->WRKY38(1)     <---------ANAC58            --------->ZAT18  --------->YAB1    --------->WRKY12      <---------ANAC46            --------------->AtSPL8   <---------MYB52(1)  <-----------RAV1(1)<---------ANAC58     ------------>CBF      <-----------RAV1(1) --------->ATHB12    <---------ANAC46     <---------ANAC58    --------->ANAC46  <---------MYB46(3) ---------ATHB12  <-----------RAV1(1)     <---------ANAC46   --------->ZAT14    <-----------RAV1(1) ---->RAV1(1)<---------MYB46(3)   ------------>CBF    <---------------AtSPL8--------->ATHB12  ------- ---ID1    <---------MYB52(1)<---------ZAT14 ----------->GT1 <---------ZAT14<---------ICU4<---------ANAC46 ---->MYB46(3)<-------GAMYB--------------->AtSPL8  <------------CBF   ------>ZmHOX2a(1) <---------ANAC46   aaatcgttggcccgtttgttgtgttgtgttgtgtactacaatttgtgtggtaatattgtgtactacacaatcctttcatcatttgttgtgttgtgtatat  4694600                                                                                                    -                                                                                                    <                                                                                                  ---                        <---------GLK1(1)                                                       -----                       --------->ARR11(3)                                                       <----                    <---------TOE2(3)                                                           <----                    <---------TOE1(3)                   <-----------GT1                         <----              <---------ARR14(2)                       <---------YAB1                           -----              --------->ARR14(2)                    --------->AHL20(2)                         <-----          --------->At4g35610                     ------>ZmHOX2a(1)                            xxxxxx          <---------ZAT2--------->GLK1(1)         <----------DOF2                      <---------TOE1(3)   --------->At4g35610<------ZmHOX2a(1)      ------->GAMYB                >>>>>>>>>GATA-1 --------->ALFIN1 ---->TBP <---------At4g35610*TSS           --------->ZAT6              ----------->GT1<---------TOE2(3)   atagtagctctcagcagatttgaaggatatcgaaactcaaactgtaacagtccttttattactggtttagaagatagataaatattgttaaggtagtgga  4694700                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                              -------                                                                                         ----------->HVH21                                                                                        <-----------HVH21                                                                                       ==============                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                   --------->MYB46(3)                             xxxxxxxxxxxxxxxxxxx          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                        xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                        xxxxxxxxxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------At5g28300XXXXXXXXXXXXXXXXXXXX        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <-----------GT1     xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------ICU4         xxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->ICU4          xxxxxxxxxxxxxxxxx>smallRNA(se3)        <--------P               --------->MYB52(1)  <-----------TGA1            xxxxxxxxxxxxxxxxxxxx        <XXXXXXXXXXXXXXXXXXXXMIR398A                --------->ANAC55(2)          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <XXXXXXXXXXXXXXXXXXXXMIR398B/C               --------->REM1(1)            xxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------ANAC55(2)          xxxxxxxxxxxxxxxxxxxx -------->ETT(2)                <---------WRKY38(1) --------->bZIP60(1)          xxxxxxxxxxxxxxxxxxxx ---------ETT(2)               <---------ATHB12     <---------bZIP60(1)          xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ZmHOX2a(2)                --------->MYB46(3)   --------->bZIP60(2)          xxxxxxxxxxxxxxxxxxxx ---->ARR14(2)                --------->ANAC58      --------->ANAC58            xxxxxxxxxxxxxxxxxxxxx -----ARR14(2)            --------->ANAC58          --------->ANAC46            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----AGP1xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ANAC58            XXXXXXXXXXXXXXXXXXXX>MIR398A -----ARR11(3)            --------->ANAC58     --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxxx ---->ARR11(3)       --------->TOE1(2) <----------DOF2--------->TGA2(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----CCA1(2)--------->CCA1(2) --------->ANAC58 --------->ANAC46  --------->At4g35610   ============== xxxxxxxxxxxxxx>smallRNA(se3)--------->WOX13(1)--------->ANAC58  <---------At4g35610   --------->TGA1a   tctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctacgtcattgttacagctctcgtttcatgtgttctcaggtcacccct  4694800      ==============================================bZIP_DOF      <----------DOF2  <---------At4g35610 --------CDC5 ----->At4g35610 ----->ZAT2 ------->RAV1(2) ------ZAT2 ------At4g35610 ---->RAV1(2)                                  <---------ANAC46 ================bZIP_DOF                  --------->LBD16 >smallRNA(si3)                            <-------PIF5 >smallRNA(le3)                            ------->PIF5 x>smallRNA(le3)                          <---------TGA1a x>smallRNA(si3)                        <---------ANAC46 x>smallRNA(s2)                      --------->ALFIN1 x>smallRNA(s2)                      --------->ATERF1(1) >smallRNA(se3)                      ----------->HVH21 >smallRNA(s2)                      <-----------HVH21 >smallRNA(l2)                     <---------O2<---------ANAC58 x>smallRNA(fl3)                   <---------bZIP60(2)               <---------ANAC46 >MIR398B/C                        --------->DEAR3(1)                <---------REM1(1) >smallRNA(fl3)                    <---------ANAC58             ------>MYB83 >smallRNA(si3)                    <---------ANAC58           --------------->AGL15 x>smallRNA(si3)                 ===================MYC_MYB   <---------------AGL15 >smallRNA(le3)                  ------->GAMYB <---------ANAC58 ------>MYB46(1)                 <---- >smallRNA(le3)                 --------->DEAR3(1)           ----------------->AGL1           <------ >smallRNA(le3)                 --------->ANAC46             ----------------->AG            <------- ========MYC_MYB--------->ORA47(1) <---------ANAC46        <-----------GT1                 <---------MYB52(1)   gctgagctctttctctaccgtccatgttttatcaacgccgtggcccgtggcttctattcatttaccaaatggtgtaagtttctatgtaaactcgttatct  4694900                                                                    --------->YAB1                                                                   --------->ICU4          <---------ANAC58                                                                  <---------WOX13(1)       <---------ANAC58                                                             <----------DOF2        --------->AHL20(2)                                                          --------->ANAC58        --------->TOE2(3)                                                          --------->ANAC58        <----------DOF2                                                         ------->TEIL           <--------------------                                                         --------->SPL7       ------>ZmHOX2a(2)                                                         <-------TEIL        <------ZmHOX2a(2)                                                       <---------SPL7       --------->ARR11(3)                                                      <---------ANAC58      <---------ARR14(2)                                                      <---------ANAC46      --------->ARR14(2)      <---------YAB1                                  --------->ANAC55(2)   <---------ARR11(3) <---------ZAT6                                       <---------ANAC58<---------YAB1<---------AHL20(2) ------DOF2                                           <---------ANAC55(2)   <-----------ARR10 ---YAB1               ----------->GT1               <---------TOE1(2)<---------REM1(1)  <-----------GT1 --ARR11(3)     --------->YAB1                       --------------->AtSPL3<------ZmHOX2a(1)   ttagtattacaaatgaaatcacaagtagtacaaacgtagaaactcttggtaatcttacgtacgctttgaatgatgaaggatctactttaattttcttgct  4695000               --------->ANAC58               --------->ANAC58                                     <---------YAB1       ------------     <----------DOF2                  <---------GLK1(2)       <---------YAB1             <---------ANAC46  ---------->ID1  ---------->DOF2 ---------->DOF2  --------->At4g35610               <----------DOF2 ----ANAC81<-----------GT1    <------ZmHOX2a(1)    <---------At4g35610    <-----------HVH21     -----   atttgttcttttttaacaagaaaagaaacagaggaagaaagaaactcacaatgagctcatcaacacgattgtgatttgtcagagtcactttgcctatatt  4695100  Previous    Next  AGI:  At5g14565.1    Description:  MIR398C; miRNA Range:  from: 4694629    to: 4697016    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g14570.1    Description:  ATNRT2.7 (ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.7); nitrate transmembrane transporter. similar to ATNRT2.5 (NITRATE TRANSPORTER2.5), nitrate transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G12940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14727.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 4695087    to: 4697081    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version