Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->At4g35610                                                                -------           <---------At4g35610                                                               --------           <---------ZAT2            --------->AHL20(2)            --------->ANAC58       --------->YAB1           --------->ZAT2     --------->AtLEC2                     --------->ANAC58  <---------MYB52(1) -------->ANAC55(2)        <-------TEIL                   <-----------GT1          ----------->GT1 ---------ANAC55(2) --------->MYB46(3)                <----------DOF2<---------GLK1(2) --------->WOX13(1)   gtatgtaatcttcagctgtctaacaaacatccatacaaattgaatatttcagtcttctttttgctccacaagaatttcaactaatcggttaatcaaaaag  4686500                                                ----------->GT1                                       <---------WRKY18(1)                                  <<<<<<<ZML2  <-----------------------TaNAC69(2)                               --------->HSFC1(1)               <---------ANAC55(2)--------->ARR11(3)                                        <------NtERF2               --------->ANAC55(2)<---------ARR11(3)                <------ZmHOX2a(1)     <---------DEAR3(1)            ------>ZmHOX2a(1)  <---------HSFC1(1)            ---------->DOF2           <---------ANAC58 -->DAG2   --------->TOE1(3)   --------->HSFB2a(2)        --------->TOE2(3)            <---------ANAC58 -->DOF2   --------->TOE2(3)   <---------HSFB2a(2)        --------->TOE1(3) <---------ARR14(2)   cttcttcttgattccttaagtaacctagtttctctagaacttgaccagataagtataaaacctaaaaacaggaaggaagaactgacttagcgttggcgat  4686600                                                                         --------->ARR11(3)                                                                         ------->TEIL                                                                         <-----------ARR10                                                                         --------->ARR14(2)                                                                 --------->ANAC46                                                                ------>MYB83                                                                ------>MYB46(1)                                                           <---------GLK1(1)                                                           --------->GLK1(1)                                               <---------ICU4   --------->MYB52(1)                <--                                           =================HOX2a_HOX2a  <---------ARR14(2)      ----                                           <------ZmHOX2a(2)   --------->MYB55(1)                ----                                          <---------ARR11(3)  <---------MYB55(2)                 ----                                          --------->ARR11(3)  --------->MYB46(3)               ------                 --------->YAB1 ----------->HVH21    ------>ZmHOX2a(1)  <---------CCA1(2)     -------   atcgaagaggcgaagtgaatcatcttcgctggatgtgaccaatagatcatcagtcctatggaaacccaccgaatgtatcttccctccctgtgtaaaacca  4686700                                          ---------->DOF2 -------ALFIN1                           --------->AtMYB61 -->MYB46(1)                 --------->At4g35610                                      <-------TEIL -->MYB83                    --------->ZAT2                                   <----------ID1 ---->P                      <---------ZAT2                                   ----------->GT1 --->AtMYB61                 <---------At4g35610      --------->LBD16      --------->DAG2 ----------- -->MYB46(3)           <---------LBD16  --------->ANAC46                  ---------->DOF2 <---------TOE1(2)   acaccgagaaattgaacggattaatctcggaagctggattccaccaaagtttaatccgaaatcaaatgagattacaaaaagagaaaaattcgttcgtaca  4686800                                                           --------->ANAC46                                                         <---------DOF5.7(2)                                                        <---------WRKY38(1)                                                        <---------WRKY12                           --                                                       --------->DOF5.7(2)                 --------->ANAC58              <---------ZAT18                         --------->LBD16                      --------->ANAC58              ------>NtERF2 ------>ZmHOX2a(1)         <-----------HVH21         <---------YAB1     <-            --------->ZAT18--------->TOE2(2)     --------->ZAT2        <---------ZAT2---------->DOF2           <---------ATERF1(1)            <---------MYB52(1)------->GAMYB   <---------GLK1(2)      -- ---->AtSPL3<---------ZAT18--------->TOE1(2)     <---------ZAT2        --------->ZAT2--------->ZAT14   aaatcagagaagactgcgcccatggccatcctgcgaaccagtccgtcgtctagctccgtcaacgacatcgtcaagctggattatcagtgaagcacgagaa  4686900                                                                               --------->ANAC58                                                                       <--------P                                                                    --------->LBD16                                                                    <---------TOE1(2)                                                                   <---------ANAC46                                                                  <---------LBD16                                                                 <---------ANAC58            *TSS                                                 <---------ANAC46  ------>NtERF2      <------ZmHOX2a(1)                                     <------MYB83       --------->ANAC58   --------->LBD16                                          <------MYB46(1)    --------->ANAC46  <---------TOE1(1)                                     <---------ANAC46     ---------->DOF2      <-- ------->GLK1(2)                                      <---------ZAT14 <-------GAMYB<---------At4g35610 --------ARR14(2)                                     --------->ZAT14----------->GT1  <---------RAP2.6(3) ------->ARR14(2)   --------->ALFIN1           ---------->DOF2   <---------ANAC58 --------->DEAR3(1)   aaatccgaggacgagagagggagaggggcaagggaacgagagagagaactaaagagtttagtgggtttcgcgggttactaaacgcagccgttttagtttt  4687000                                                                          ---------->DOF2                                        >>>>>>>ZML2                    --------->MYB59                                     --------->AGP1         <---------ANAC46           --------->ZAT14             ---------->DOF2 ---------->ID1                 <---------ANAC58           <---------ZAT14 <------------CBF      <---------ARR11(3)   --------->YAB1  <---------ANAC58           <---------REM1(2) -------TOE2(3)        --------->ARR11(3)  <---------ZAT6  ---------->ID1<------ZmHOX2a(1)       <---   aagaattgggataacaaaagaaaaacatcttgtcgttcagttctagtcataaaaactacatgtcgttttggattaggaaagagagcctgtacactgcgac  4687100                                                                              --------->HSFC1(2)                                                                              <---------HSFC1(2)                                                                   <---------AHL20(2)                                                                  <---------AHL20(2)    --------->ZAT6                                                --------->AHL20(2)  <-----------GT1                                        ----------->GT1  ------>ZmHOX2a(2) -------DOF2                                 <---------ATHB12 --------->AHL20(2)                <----   tttgttacactcactggtctgtgattttctaagagtcaaataggcaaatgaatgaaacacagaaaaaaataaatgatcgaagcttcaagtttcaaacata  4687200                                                                         ----------->HVH21                                                                      <---------ARR14(2)                                                                      --------->GLK1(2)                                                                     --------->GLK1(1)                                                                     <---------GLK1(1)                                                                --------->HSFB2a(2)                                                         --------->CCA1(2)                --------->AHL20(1)                      --------->ARR11(1)                <---------AHL20(1)                      --------->ARR11(3)  ======================bZIP_DOF                --------->ARR11(3)                      <---------ARR11(3)  <---------TGA1a       <----------DOF2                              ==================================bZIP_DOF<------  ---------->DOF2                                   ---------->DOF2<------ZmHOX2a(1)   ---------->DOF2 ---TEIL     --------->AHL20(2)           <---------TOE2(3)     <---------HSFB2a(2)  --------->CCA1(2)   catggaaagctttgaaaaaatattgaagtcacaaatgaaacaccaaggtaatccaaaagatatgttcgaggaaatctgacatgagagataaaagactata  4687300                                                                            --------->At4g35610                                                                            <---------At4g35610                                                                            <---------ZAT2                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                         <---------ZAT2                                                                      <---------At4g35610                                                                      --------->At4g35610                                                --------->AtMYB61     <---------ZAT2                                               --------->MYB46(3)    <-----------RAV1(1)                                             ------>MYB83          <---------At4g35610                                           <---------MYB111(1)     --------->At4g35610                                           <---------MYB111(2)     <---------ZAT2                                           --------->MYB46(3)     <-----------RAV1(1)                                           --------->AtMYB61    --------->At4g35610                                           <---------MYB46(2)   <---------At4g35610                                        --------->AtMYB61      <---------MYB46(3)                                       --------->MYB46(3)   <---------MYB46(3)                                     ------->GAMYB         <---------ANAC46 --------->ZAT2                                    --------->MYB46(3)     <---------DREB2C(2)                                  <---------DOF5.7(2)      <---------RAP2.6(2)                                  --------->MYB52(1)     ------------>AtMYB77             --------->LBD16    <---------MYB52(2)-------->P<---------DEAR3(2)           <---------LBD16     --------->At4g35610------>MYB46(1)<---------RAP2.6(2)     <---------At4g35610       <---------At4g35610------>MYB83<--------P<-----------RAV1(1)     --------->At4g35610       --------->ZAT2------>MYB46(1)--------->MYB55(2)              ------>ZmHOX2a(1) <-----------HVH21        <---------ZAT14 --------->ANAC46 <---------DEAR3(1)      --------->YAB1 ---ZAT14<---------ARR14(2)<---------ALFIN1<---------MYB55(2)<-------GAMYB <-----------RAV1(1)<------   caatgtcagccaaaccggaattagagacaacacagctaacgaccaccaaaccaacctcttggcggttgctgctgctgctgctgcatcatagctcctctat  4687400  Previous    Next  AGI:  At5g14530.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66240.2); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14716.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 4684623    to: 4686912    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14540.1    Description:  proline-rich family protein. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G01560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14723.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Protein of unknown function DUF1421 (InterPro:IPR010820); contains InterPro domain UBA-like (InterPro:IPR009060) Range:  from: 4687150    to: 4689677    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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