Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------LBD16                  --------->ARR14(2)                  <---------ARR14(2)               <---------HSFB2a(2)               --------->HSFB2a(2)              <---------LBD16            ------>ZmHOX2a(2)           --------->GLK1(1)           <---------GLK1(1)           <------ZmHOX2a(2)          <---------ARR11(3)                                                                      ---          --------->ARR14(2)                                                                      ---          <---------ARR14(2)                                                                      <--          <---------ARR14(3)                                                               <---------          --------->ARR11(3)                                                          <---------ZAT2          <---------AGP1                                                              --------->ZAT2          <-----------ARR10                                                           <---------At4g35610          <---------ARR11(1)          --------->ANAC46                                --------->At4g35610         <---------CCA1(2)            --------->ANAC58                            <---------ARR14(2)        --------->LBD16   <---------ETT(2)                                      --------->LBD16   <--       --------->HSFB2a(2)--------->WRKY38(1)                                   ------>NtERF2  ------      <---------LBD16     --------->ETT(2)                                     <---------RAP2.6(2)<--    --------->ARR14(2)  <-----------HVH21                                  <---------GLK1(1)   <-----    <---------ARR14(2)--------->LBD16 --------->ANAC58                ------->TEIL--------->ARR14(2) -----DOF2--------->ARR14(3)       <---------REM1(2)               <---------ATHB12   ----------->RAV1(2) ----DAG2<---------ARR14(1)        --------->ZAT14          <---------ETT(2)  <---------LBD16<------- -->ID1<---------HSFB2a(2)<---------WRKY38(1)               --------->ETT(2)  --------->RAP2.6(3)----   tatccatttccggatctccagaaccgggtcgaccctgttcacgctccatagccagtttattgtcgacccatgaatcgaattccggctctgctgagtcagg  4662300     <---------ARR14(2)     <---------GLK1(2)     --------->ARR14(2)   --------->LBD16 <---------LBD16                                                     --------->YAB1 ------>ZAT18                                             <---------SPL7     <---------ANAC58 ------>ZAT14                ------>NtERF2              --------->ALFIN1     <---------ANAC58 -------ZAT14               --------->DEAR3(1)        <-----------RAV1(1)    <---------ANAC46 --HVH21                  <---------ATERF1(1)         <---------ANAC58  <---------ICU4 -----TEIL              --------->SPL7                <---------ANAC46<---------ARR11(3) --->At4g35610          --------->ATERF1(1)           <---------ANAC58--------->ARR11(3) -------ABI4(2)        <---------ATERF1(1)       --------->ATHB12   <---------YAB1 ----At4g35610 <----------DOF2                  <---------YAB1  <---------WOX13(1)       <------MYB46(1) ----RAV1(2)  <---------ANAC58                  --------->ICU4--------->ATHB12           <------MYB83 ----->ALFIN1 <---------ANAC58                <---------At4g35610 --------->YAB1       --------->ALFIN1   tgcaccggattcgatggctttagggggacgacgacggttttgagagagagatgattgtgtgggacgattgatgatcatgtcgtattgaagtgggtatcga  4662400              <------ZmHOX2a(1)          <---------ANAC46       <---------ANAC46                     --------->HSFC1(2)                                -------     <---------ANAC46                       <---------HSFC1(2)    <------ZmHOX2a(1)     <---------WOX13(1)  <-----------RAV1(1)  --------->ANAC58   ------->TEIL     <---------WRKY18(1)        --------->ATHB12 --------->ARR11(3)    --------->ANAC58<---------TOE2(3)  ----------->HVH21    <------ZmHOX2a(1)   gtagatgttgtggagaggaagagagaagccaagtagggtttatggatgtttctccatggtttgactgaggagaagaagagaggagaagtcattgacattc  4662500                                                               <------NtERF2                                                              --------->LBD16              --------->ICU4                                                             <---------DEAR3(1)            <---------YAB1                                                   --------->ZAT18         --------->GLK1(1)                                           --------->ATHB12  --------->ALFIN1          <---------MYB52(1)                                           -------->ATHB1    <---------ANAC58         --------->LBD16                                 --------->ARR11(3)<---------ZAT14   --------->ICU4 <---------LBD16                           --------->ZAT14 --------->ATHB51  <---------ANAC58     --------->AtMYB61                           <---------ZAT14 <---------ICU4    <---------ANAC46     --------->DEAR3(1)                          --------->ALFIN1--------->ICU4    <-----------------------TaNAC69(2)  <----                        <---------ANAC46  <---------YAB1    --------->ATERF1(1)<---------ALFIN1 -----                      <---------ZAT14     <---------ATHB51  <------NtERF2  <---------GLK1(1)<--------         <---------ARR11(3)--------->REM1(2)       --------->ZAT14 ---------->DOF2<---------ALFIN1  - -->GLK1(2)           --------->ZAT14  ------------>ATHB5 <---------DEAR3(1)<<<<<<<<<<GATA-1---------   ttgctgaagaagacattagtcttgtgaagtgtagagatttcgccattattgagaacactggaggcgggggaaagatgaaatccacctccggtgattattg  4662600                                                                                        ------->MYC3                                                                                    <------NtERF2  <-                                                                                  --------->ANAC58 <-                                                   --------->ANAC58               --------->ANAC58 --                                                   --------->ANAC58               --------->ANAC46--- <---------MYB46(3)                                --------->ANAC46       --------->ARR11(3)      <-- -----ZAT14                                        <----------ID1         <---------ARR11(3)      <-- ---->ZAT14                    ----------->GT1 <---------AHL20(2)      *TSS      --------->RAP2.6(3) -ICU4      ------->GAMYB      <---------YAB1 --------->AHL20(2)      ---------->DOF2   ------->MYC2 -------->ALFIN1      --------->DAG2   ----------->GT1            <---------------AGL15 <-------MYC3 >ATHB12 --------->MYB52(1) --------->ICU4--------->AHL20(2)      --------------->AGL15 <-------MYC2   cagtggttctccaacggagaagagaaggtgatgatgttaaacgataaattaaaacgacacgatgttttctcttaaaggtctaagacggcacgttgtaagt  4662700                                               <------MYB46(1)         --------->HSFC1(2)                    <------MYB83         <---------HSFB2a(1)                  <---------AtMYB61         <---------HSFC1(2)                   --------->MYB59   ------>ZmHOX2a(1)                 --------->ATHB12  --------->TOE2(3)                  <---------ICU4  --------->TOE1(3)                 <---------ATHB12 --------ARR14(2)                   --------->ICU4                                               <--- --------ARR11(3)       <------------CBF  <------MYB83                                           <--- ------->ARR14(2)     <---------YAB1<---------YAB1                         ------>NtERF2    <-------- ------>GLK1(1)      >>>>>>>>>WRKY6<---------TOE2(3)                    <---------At4g35610 --------- -------GLK1(1)    --------->WRKY38(1)    <------MYB46(1)           --------->GLK1(1)      <---------YAB1 -------CCA1(2) <---------MYB46(3)--------->YAB1        --------------->AtSPL8            <---------GLK1(2)   atatccttagaagcctcgttgttgactattgcagattaatgatttggtttggtttttgtttgtactactgatatcgctgcctcactagattagattattg  4662800                                                                    --------------->AtSPL8                                                            <---------YAB1                                                          -------->HAHB4                                                          <---------ICU4                                                          --------->ATHB12   <-------GAMYB                                          --------->YAB1  ----------->GT1                                        <---------YAB1           --------->YAB1 ------ANAC58                                            <---------ATHB12         --------->TOE2(3) ------ANAC58 ----------->GT1                            --------->ICU4          ----------->GT1 -ICU4      ------->MYC3                                <---------TOE2(3)       <---------TOE2(3) >ATHB12    <-------MYC3                        ---------->DOF2    <---------ANAC46   catgctgttaaacacgttgtaatacatgttgttgacaaatttttgtaaatgaaagactaatgattagtgactcgtacaaaataatgttaatacatataaa  4662900                                                                   ------>ZmHOX2a(2)                                                                   ===============HOX2a_HOX2a                                                                  ================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                                 --------->ARR14(2)                                                                 --------->ARR14(3)                                                                 --------->ARR11(3)                                                                 <---------GLK1(2)                                                                 <---------ARR14(3)                                                                 <---------ARR14(2)                                                                 <---------ARR11(3)                                                           =================HOX2a_HOX2a                                                           ------>ZmHOX2a(2)                                                           =======================HOX2a_HOX2a                                                         <---------ARR11(3)                                                   --------->ARR14(2)                       <---------YAB1              <---------ARR14(2)               ----------->GT1                     <---------ARR11(3)      <------ZmHOX2a(1)          <---------YAB1--------->YAB1             --------->ARR11(3)------>ZmHOX2a(1)              -   acaaaatgacttatgaatggatactatcatcacatggactaagcacaagttcagatattgatctcaagatccttcaaggaccaagtttttgttcttagta  4663000                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                          <------MYB46(1)                                                                          <------MYB83                                                                         --------->MYB59                                                                         --------->MYB46(2)                                                                        <--------P                                                                       <---------MYB52(1)                                                                       --------->ARR14(2)                             --------->YAB1                           <------NtERF2                  ----------->GT1                                    <---------MYB46(3)                  --------->TGA2(1)                                 <---------ANAC58                  --------->bZIP60(1)                               <---------ANAC46             ----                  <---------bZIP60(1)    <---------ICU4            <---------LBD16 <----------DOF2             <---------At4g35610      --------->YAB1     --------->AGP1<---------ARR14(2)        ---- -------->ZAT6    <---------REM1(1)  <---------YAB1   --------->YAB1<---------ANAC58         <-------   taagactaagaggtctgatgatgtaacaaaatcatgtttttgataatgtcttaatatcagaactactgaggcgggtaggcacaagctttactggctcaac  4663100                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                     ---------->CDC5          ------>ZmHOX2a(1)     -                                                   <---------ALFIN1          <---------ALFIN1       <         <---------GLK1(1)            <-----------------AGL1             <---------ZAT2             -         --------->GLK1(1) <---------HSFB2a(2)     <-----------HVH21     --------->ZAT2             <        <---------ARR14(2) --------->HSFB2a(2)    <------NtERF2          --------->At4g35610        -        <---------GLK1(2)  <---------HSFC1(1)   --------->PCF5           <---------At4g35610  =======        --------->ARR14(2) --------->HSFC1(1)   --------->PCF2       --------->AtMYB61        <------ ----->YAB1  <---------ETT(1)         ----------->RAV1(2)            <---------ALFIN1     --------->ZAT14 ----->TOE2(3)        <<<<<<<<<TBF1   <---------At4g35610         --------->AtMYB61       <---------ZAT14 --WRKY38(1) --------->ANAC46       <---------WRKY18(1)          --------->MYB46(3)       <---------ZAT18   gataaatccagatttccgacattcttcttctagaagtttgacctgagatggcccctcagggcagaaaaccaccacagctcctccgcttccagtgaacttt  4663200  Previous    Next  AGI:  At5g14460.1    Description:  pseudouridylate synthase TruB family protein. similar to NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) [Arabidopsis thaliana] (TAIR:AT3G57150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14681.1); contains InterPro domain tRNA pseudouridine synthase B, N-terminal, bacterial-type; (InterPro:IPR014780); contains InterPro domain tRNA pseudouridine synthase B, N-terminal; (InterPro:IPR002501) Range:  from: 4660062    to: 4662671    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14470.1    Description:  GHMP kinase-related. similar to GHMP kinase family protein [Arabidopsis thaliana] (TAIR:AT3G01640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14683.1); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase, C-terminal (InterPro:IPR013750); contains InterPro domain GHMP kinase; (InterPro:IPR006204) Range:  from: 4662806    to: 4664650    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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