Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------MYB52(2)                                 --------->At4g35610                                     -------->P                                 <---------At4g35610                                     ------>MYB46(1)                                 --------->ZAT2            --------->YAB1                ------>MYB83                     ------>MYB83<---------ZAT2            <---------ICU4              <---------ALFIN1                     ------>MYB46(1)          ---------->DOF2                     <---------ANAC58                    --------->MYB52(1)   --------->At4g35610 --------->At4g35610  <---------ANAC58                   --------->AtMYB61  ----------->RAV1(2) --------->ICU4      <---------ANAC58      < ------->ANAC46   --------->MYB46(3) -------->P           <---------ATHB12    <---------ANAC58   <---   cacactagattccactaaaaaccaacgcgagactcagctaacctgctccaaagaagagtaatcatcagaaattttcgaatacttgcgctccaacctcttc  4650300                                                                                         <---------ZAT14                              --------->ZAT14                                            --------->ZAT14                              <---------ZAT14                                            --------->ARR14(2)                             --------->ALFIN1                                            <---------ARR14(2)                            <------NtERF2                                         <-------GAMYB                            --------->ATERF1(1)                                  <---------MYB46(3)                           <---------ORA47(2)                                  <------ZmHOX2a(1)    <                          <---------DEAR3(1)                                 --------->ALFIN1      <-          --------->TOE2(3)<---------DEAR4(2)                               <------ZmHOX2a(1) <------          --------->YAB1  <---------DREB2C(2)                             --------->ALFIN1    <------          --------->TOE1(3)<---------DEAR3(2)                        ---------->DOF2  <---------ANAC55(2)    --------->ZAT6        --------->ALFIN1                          <---------AHL20(2)<---------ANAC46   <---------YAB1        <---------------------WRI1       --------------->AtSPL8<---------AtMYB61<---  <-----------GT1      --------->DAG2        --------->At4g35610<---------------AGL15 --------->ANAC55(2) --------->YAB1    --------->HSFB2a(2)       <---------At4g35610--------------->AGL15 <---------ANAC58 ---------YAB1     <---------HSFB2a(2)       --------->ZAT2    ----------------->AGL3 <---------ANAC58 ------YAB1     <----------DOF2              <---------ZAT2    <-----------------AGL3 <---------ANAC55(1)   ttattatcactaccataactttgagaaggcggtgcagaataagacggagcagagtaaggctgagtactatataaaggaggaggaggttgcgtatactcag  4650400    <---------ANAC46          --------->YAB1   <------MYB46(1)            -------->HAHB4   <------MYB83               <---------ICU4 --------->ALFIN1            <---------YAB1           <------ZmHOX2a(1) <--------P                  --------->ICU4   <---------ZAT14 -------GAMYB            --------->At5g28300  --------->ZAT14 --------MYB46(3)       ----------->GT1    ----------->RAV1(1) ---LBD16              ----------->GT1   --------->ZAT18 -----RAV1(2)        <------ZmHOX2a(1)   <---------ZAT18    <----------DOF2                         < ---ZmHOX2a(1)  --------->ALFIN1    <----------DOF2 <---------TOE2(3)                          <-----   gaggttgggcataagaaggtggaggagggtaattatagctttctgcaccatactgaggataactttgttgagaagcccatgaagatgaagatggtgatgc  4650500             >>>>>>>>>>WRKY11             >>>>>>>>>>WRKY6            --------->WRKY38(1)                     <---------ANAC58            --------->WRKY12                        ----------->RAV1(2)                             <    --------->At4g35610                             <---------ANAC58                           <-----    <---------At4g35610        --------->ETT(2) <---------GLK1(1)                     =============== ---------REM1(1)       <---------YAB1    <----------DOF2                             <----------DOF2 ----At4g35610  <---------MYB59<---------ETT(2) --------->GLK1(1)  --------->TOE2(3) --------->TOE2(3)   tgatgaagcagaagttgacctaaacgatgactgtctccagttttctttagaattccctgtccccatcaaacttaacaaaaaactaaacctttttagattc  4650600                        ------->TEIL                        --------->SPL7                      <---------SPL7                     --------->ANAC55(2)                     <---------ANAC46                     <---------ANAC55(2)                     <---------ANAC58                     <---------ANAC58                    --------------->AtSPL3                    --------------->AtSPL8                  <---------ARR14(2)                  --------->ARR14(2)                 <---------At4g35610                 --------->At4g35610                <---------DEAR3(2)                      <---------KAN4(2)             <-----------HVH21                          <---------ARR14(2)            --------->TGA1a                             --------->ARR14(2)       --------->DAG2            ===============================================bZIP_DOF   <---------LBD16              <- ---------ATHB12--------->MYB52(2)      --------->ARR11(3)   --------->YAB1     ---------->DOF2    <- --TEIL <-----------HVH21   --------->AtLEC2    <----------DOF2     ------------------------>ANAC81<- =====================bZIP_DOF          <---------ARR11(3)  <-------TEIL--------->LBD16    <---------   aaatcaaacctctcaggtcagttccgtaccctgcaaaacaaagatttagcctttagagtatattcatgaaaccccagaaaaaaaaagcagaaactttgtt  4650700           <---------ICU4           --------->ATHB12                     <---------TOE2(3)  --------->GLK1(2)                    ------>MYB46(1) *TSS     <---------YAB1             --------->TOE2(3)----------->GT1  ----------->HVH21 --------->ARR11(3)                  <---------MYB59 --------->DAG2  <----------DOF2 <---------GLK1(2)                  ----------------->AGL1         <---------YAB1             ------- --------TOE1(3)      <-------TEIL  --------->ANAC55(2)        <----------DOF2              <-------- --------YAB1<---------YAB1         ----------------->AG  ---------->DOF2   <---------At4g35610 --------TOE2(3)      ------------>CBF ------>MYB83---------->DOF2<---------ARR11(3)      ----------- -DOF2    --------->ICU4    <-----------GT1  <---------MYB52(1)<---------DAG2--------->ARR11(3)    <-   taagattctgacattattagaagatgcaatttacctatacctaattcgttaagaaaaggtgaaagctttatctttgacagatgttgaattatctcaccgc  4650800                                                         --------->ANAC55(2)                                                         --------->O2                                                         --------->bZIP60(1)                                                         ----------->GT1                                                         --------->ANAC55(1)                                                         --------->ANAC58                                                         <---------ANAC55(2)                                                         --------->ANAC46                                                         --------->ANAC58                                                     <-----------HVH21                                                     <-----------TGA1                                                    =========================================bZIP_DOF                      --------->ARR11(3)            --------->bZIP60(2)                      <---------ARR11(3)            --------->ANAC55(2)               <---------MYB46(3)                   --------->ANAC55(1)               <------MYB46(1)                      --------->ANAC46               <------MYB83                         --------->ANAC58              <---------AtMYB61                     <---------bZIP60(1)              --------->MYB111(2)                   --------->bZIP60(1)              --------->MYB111(1)                   --------->O2              --------->MYB46(2)                    --------->ANAC58              --------->MYB59                       <---------O2             <--------P----------->GT1              --------->TGA1a           <---------MYB46(3)                       --------->TGA2(1)           <---------HSFB2a(1)                      <---------TGA1a          --------->ANAC46           --------->HSFB2a(1)                      <---------ANAC55(2)      --------->ANAC58 =======           <---------HSFC1(2)               --------->GLK1(2)   <-----------GT1   <----------DOF2          <---------TOE1(2)         ==========================bZIP_DOF       <---------ANAC55(2)          <---------TOE2(3)         ---------->DOF2<-----------STF1          --------->ANAC58 <------          <---------TOE1(3)     ==============================bZIP_DOF----------->RAV1(1)     ------- -->DEAR3(1) =================================================MYC_MYB--------->ANAC46         ------- -At5g28300--------->HSFC1(2)  <---------AHL20(2)<---------ATHB12  --------->HSFB2a(2)        <------ >HVH21   <---------TOE2(2)--------->AHL20(2)<-------TEIL<---------bZIP60(1) --------->ANAC55(2) ---------DOF2<---------MYB46(3)---------->DOF2--------->WOX13(1)  --------->ANAC46       <---------ANAC46   tctttaaaatcgaaggttggtagagatgtttatataaagaaaggagattcaatcacgtcacgtaattttccacaacaatacgcgatttagtgacttctag  4650900      ---------->DOF2    --------->CCA1(2)      ------>MYB83     ----------->RAV1(1) <---------YAB1            ------>MYB46(1)  --------->ANAC46 <---------TOE2(3)         -------->P       <---------------AGL15                   --------->TOE1(2) ===========================================================MADS_MADS               --------->TOE2(2) ---------AGL15          <---------MYB59   ------->GAMYB                          --------->ARR14(2) -->HSFB2a(2)     <---------YAB1  <---------ALFIN1 ----------->GT1          ----------->HVH21 -------->AGL15   <---------ANAC55(2)    --------->ANAC46                --------->GLK1(2)  <-------- ---HSFB2a(2)------>ZmHOX2a(1)  ----------->RAV1(1)<---------ANAC55(2)  <---------GLK1(2)  --------->HSFB2a(1)   attaagataaaagtcctattacgaaaacctactccaacactctaacccacaataagtaaaacaaacaaaaaccagtttctgacaaatctacgagctttcc  4651000                                                                                                    -                                                                                                    <                                                                                                  ---                                                                                            ------>NtERF2                                                                                           --------->ANAC46                                                                       --------->AHL20(2)  --------->LBD16                                         ---------->DOF2             --------->TOE2(3)     <---------ETT(1)     --------->DEAR3(1)               >>>>>>>>>>MYB80          --------->YAB1        ------->TEIL<--- --DOF2                        <-------TEIL     -------->P----------->GT1           <---------GLK1(2)   aatttcgccgaattgaactgaaacattctctgattcatcaaaccaaagactaccccaaaatcgaaaaataacattaattcgagattgaatctcccgacat  4651100                                                                   ----------->TGA1                                                                   ----------->HVH21                                           <----------DOF2--------->At4g35610                                          --------->TOE2(3)  --------->At4g35610 -------->At4g35610                   --------->ETT(2)    <---------At4g35610 ---------At4g35610            --------->DAG2         --------->ANAC46                             <- ------>YAB1                  ---------->DOF2       --------->MYB52(1)                           <--- ----TEIL   <---------MYB59 <------ZmHOX2a(1)  <-----------GT1  <------ZmHOX2a(1)     <----------DOF2   tcatcagaaaatgacccaattcgattgagaggaaaagttgtctacctttaaactaaacgaagcagaggaatgacgaatcagagaagtactttgagagaga  4651200  Previous    Next  AGI:  At5g14420.1    Description:  RGLG2 (RING DOMAIN LIGASE2); ubiquitin-protein ligase. similar to RGLG1 (RING DOMAIN LIGASE1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G01650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14679.1); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Copine (InterPro:IPR010734); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 4648114    to: 4650701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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