Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->ARR14(2)                                             <-                                    <---------ARR14(2)                                             <-      <----------DOF2              --------->ATHB12                                         <--------    <---------At4g35610            <------ZmHOX2a(1)                                        <--------    --------->At4g35610          <---------TOE2(3)          --------->ALFIN1                <--------  <---------ZAT18      <---------SPL7        --------->ATHB12                        <---------TOE2(3) --->ARR14(2)          <---------RAP2.6(3)  <---------AHL20(2)              --------->YAB1<---------YAB1 ----ARR14(2)         <---------MYB46(3)    --------->AHL20(2)           --------->WOX13(1) <--------   actgtgagcttcaagtagagagggccgttcagactgaggattggattttattggtactgagagtgggaacgtagtcattcatgagttaagttttgcttgg  4608700                                                           --------->ANAC55(2)                                                           <---------ANAC46                                                       <------MYB83                                              <---------ANAC58                 <---------WRKY12             <---------ANAC46               <---------PCF2         <---------MYB52(1)<---------SPL7   <---------ANAC58                  <-------GAMYB <---------REM1(1)       <----------DOF2   <---------ANAC58                 <---------ANAC46   <------MYB46(1)<---------ANAC58 --------AtMYB61 <---------WRKY38(1)<---------ANAC58  <---------------AtSPL3 --------HSFB2a(1)                  <---------ANAC58  <---------------AtSPL8                --------- -AtLEC2      <------MYB46(1)   <----------DOF2   <XXXXXXXXXXXXXXXXXXXXMIR171B/C ---------->ID1 -ANAC46      <------MYB83  <-----------GT1   <---------ANAC58        <---------ANAC58      --------- -ANAC58    --------->ALFIN1---------->ID1  <---------ANAC46     --------->ARR11(3)         <-------- -ANAC58  <---------O2  <----------DOF2  <-----------RAV1(1)     <---------ARR11(3)      <---------ANAC46   aatggtcgtgagaagtgggtcatcgtctttttccctttgcgttgtgttgtgtgatgttggtacgggttatcttcgtgcttcttgtcgaattgagtatatt  4608800                                                        <---------AtLEC2                                                   <---------MYB52(1)                                              <---------bZIP60(1)                                              --------->bZIP60(1)                    --------->AHL20(2)                                           --------->ANAC46                    <---------At4g35610     ---------->DOF2                    --------->ARR14(2)                     --------->At4g35610 >ARR11(3)                    <---------DAG2  <---------O2                    --------->DEAR3(1) >ARR14(2)                    <----------DOF2 --------->O2                 --------->ANAC46 --------- -ARR14(2)             ---------->DOF2  <---------ARR14(2)               <-----------GT1 --------->AHL20(2)   gtatcagtaaagaatttataacttaaaaagagccttatgtcaaatacgacgtcgttttgtatggaaatggattttttacaccgctgaaaaaataaaaaga  4608900                     --------->ANAC58                     --------->ANAC46                     --------->ANAC58      --------->GLK1(2)     --------->ARR14(2)                                                                   <---------ANAC46     <---------GLK1(2)                                                                    <---------ANAC58 <---------LBD16  --------->ZAT14                                           <---------MYB52(1) ->DOF2        <<<<<<<<<TBF1                                           --------->GLK1(2)  <---------ANAC58   aaactcggaatctcttcttcttcactcaagaagtcgctctgaaacttggaaaccacatttttgttctctcaagagtctgttttttttttctggcgtaagt  4609000                                                                                  --------->YAB1                                                                                 <---------ATHB12                                                                               --------->WOX13(1)                                                        <---------TOE1(3)    ------------>CBF                                                  --------->ICU4           --------->ANAC46                                              --------->ARR11(3)           --------->ANAC58                                             <---------GLK1(1)         --------->ANAC46                                             --------->GLK1(1)         --------->ANAC58                                         <---------WOX13(1) <----------DOF2--------->ANAC58           --------->DAG2               <------------CBF<---------TOE2(3)  ------>NtERF2          <--          ---------->DOF2           <---------ZAT6<---------YAB1       --------->ANAC58           ---       --------->AtLEC2           <---------ANAC46------>ZmHOX2a(1)  <---------AtLEC2      <---------   ttgaatttcatgaaaagttgttatcgctagtcgatttagtgtaattgatatcctgattaaggcttttctctgcatgccagccaatcaggctagaattgtg  4609100                                                                     ----------->HVH21                                                                     ----------->TGA1                                                                   <---------MYB46(3)                                                                  --------->ALFIN1                                                                  <---------AtMYB61                                                                  <---------ANAC46                                                                <---------MYB46(3)                  <                                                               <---------DEAR3(1)                   <                                           <------MYB83        --------->ALFIN1                    --                                 ------>NtERF2                 <---------AtMYB61                   <-                            --------->ATERF1(1)              <---------MYB46(3)             <--------          --------->ANAC58 ------>NtERF2   <------MYB46(1)  <---------AtMYB61               ---------    ---------->DOF2------------>CBF    --------->ZAT2       --------->ALFIN1             --------->ANAC46 -------ANAC46    <<<<<<<<<<<<<<<<<LFY <---------ZAT2    <-----------RAV1(1)            ------->GAMYB -------->GT1  <------------CBF ----------->HVH21      ----------->RAV1(2)    ----------->TGA1------- ---CBF   --------->ANAC58 <---------ATERF1(1)         <---------At4g35610    ----------->HVH21    --   aagtataaaagtaagcaaattgacaatggcgactccgacggagctaggtttctcttcacctggtggtggtggtgacgactctgacgataaccctccacag  4609200   --------->SPL7 --------->ZAT18 <---------ZAT18                ----------->RAV1(1) ---------ANAC58             ------------------------>ANAC81 ---------ANAC58           ---------->DOF2 ------------->AtSPL8   --------->LBD16                                                           --- --------------AtSPL3  --------->HSFB2a(2)                 ---------->DOF2                 <---------ANAC58 -ALFIN1               --------->ANAC46 ------------------------>ANAC81                    <---------ANAC58 -->RAV1(1)<---------------AtSPL3       >>>>>>>>>TBF1 >>>>>>>>>TBF1           ----------->RAV1(1) === -->ANAC46 --------------->AtSPL3  ------->GAMYB   >>>>>>>>>TBF1             --------->ANAC46     === ------------->AtSPL3  <---------HSFB2a(2)  --------->MYB52(1)     <----------ID1     <---------ICU4   aagcgtacttcaaaacgtactgcttccgaaacagcaacagaagaagaaacgaagaagaagaaaaagaagaagacgaagcacaacacaaaaatggcttctc  4609300              --------->HSFB2a(2)              <---------HSFB2a(2)             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           <---------AGP1           <---------ARR14(2)           --------->GLK1(2)           <---------ARR11(3)           --------->ARR14(2)           --------->ARR11(3)          <---------ARR14(1)          <---------CCA1(2)         --------->LBD16        ------->GAMYB                                                                            <---       <---------LBD16                                                                           <---       ----------------->AGL1                                                                <-------GAMYB       <-----------------AGL1                                                               <--------      --------->MYB52(1)                                                                    <--------      -------->P                                                                            <--------    --------->MYB46(3)                                                                   <---------WOX13(1)  --------->ANAC58                             <---------ARR11(3)                       <---------ANAC58  --------->ANAC58                             --------->ARR11(3)                       <---------ANAC58  --------->ANAC46                         ---------->DOF2                             --------->ATHB12 --------->LBD16                        --------->YAB1                              --------->ANAC55(2) --->ZmHOX2a(1)                         --------->TOE2(3) <----------DOF2           <---------ANAC58< ===================HOX2a_HOX2a      <---------CCA1(2) ------>ZmHOX2a(1)            <---------ANAC58- ==================HOX2a_HOX2a --------->ZAT2<---------TOE2(3)---------->ID1      <---------AHL20(2)-   ctccgagcaaccggatctggaacgaagaagacgagctctctatcttaaaggtatttcctactttgtctcatctatctactgcatttacttgattgcgttg  4609400               --------->ARR14(2)               <---------ARR14(2)               <---------ARR11(1)                                                                  --               <---------ARR11(3)                                                                  <-    ------>ZmHOX2a(1)                                                                             <--    --------->LBD16                                                                               ---  <-----------------AGL1                                                                          <--  ----------------->AGL1                 <---------GLK1(1)                                        <-- ------ANAC58  --------->ARR11(3)       --------->ARR14(2)                               <---------AHL20(2) ------ANAC58 --------->GLK1(1)         <---------ARR14(2)                              <----------DOF2 -ANAC46      <---------CCA1(2)    <------MYB46(1)                                   <---------ANAC58 -ANAC58 --------->ANAC58         <---------AtMYB61                                  <---------ANAC46 -ANAC58 --------->ANAC58         <---------MYB46(3)                         <---------WOX13(1)   --- ---------ARR14(2)         <---------LBD16                       --------->ARR14(2)  <---------ANAC58 -------->GLK1(2)    --------->YAB1<------MYB83                  <---------ARR14(2) <-------TEIL  --- -------->ARR14(2)  <---------YAB1--------->ALFIN1        <------ZmHOX2a(1)--------->ATHB12       ---   cgattcctgaaacggcatatctataattctcagggattggtggattttcgagctaaaacaggactcgaatccaaaattgattgggatgcgttttattgtt  4609500             <---------ATHB12     <---------HSFB2a(1)     --------->HSFB2a(1)  ---------->DOF2 <---------WRKY12 ------->TOE2(3) ----------HVH21 -------bZIP60(1) ------>ANAC58                                         <------ZmHOX2a(1) -------ANAC55(2)                         <---------YAB1                  <---------ANAC46 -------ANAC46                       <---------ZAT2 <-----------RAV1(2)   <---------ANAC58          - ------>ANAC58                       <---------At4g35610                  <---------ANAC58          < ------>ANAC55(2)                    --------->At4g35610         >>>>>>>>>TBF1       ----------->GT1- ------>bZIP60(1) ----------->HVH21 ------>NtERF2   <---------LBD16    <---------ARR14(2)        <---   acgtcaaaggttccattcatgtgaaagtttccaagtgccagcttatgagtaagaccaggaagttgaagaagaagttccttgatcaaatggagaaaatcga  4609600  Previous    Next  AGI:  At5g14270.1    Description:  ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9); DNA binding. similar to ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10), DNA binding [Arabidopsis thaliana] (TAIR:AT3G01770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14610.1); contains InterPro domain Bromodomain (InterPro:IPR001487) Range:  from: 4604735    to: 4608908    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g14280.1    Description:  DNA-binding storekeeper protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14611.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF573 (InterPro:IPR007592) Range:  from: 4609126    to: 4611447    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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