Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->HSFB2a(2)                       <---------HSFB2a(2)                                   >>>>>>>>>ARR2                       --------->LBD16                          --------->LBD16                    <-                    --------->CCA1(2)                          <---------LBD16 ----------->GT1     <-                    <------ZmHOX2a(2)                 --------->ANAC58       >>>>>>>>>ARR1         <-                   --------->AGP1                --------->ANAC58   ---------->DOF2                --                   --------->ARR14(2)            --------->ANAC58--------->LBD16                   --       <-------TEIL<---------ARR14(2)    --------->ANAC58<---------ARR14(2)<---------TOE2(3)       --    --------->STY1(2)------>ZmHOX2a(2)   --------->ANAC46<---------GLK1(2) <---------TOE1(3)      <-- ----ANAC58    <---------At4g35610       --------->ANAC58--------->ARR14(2)<---------YAB1        <--- ----ANAC58   ----------->RAV1(1)    <-----------GT1  --------->ANAC58----------->GT1         -------   ttccctagctacatggcaacagatccgagaaaattgaattcacaatccaccaaggcaaggattctccagggaaagttaagattgtaaatacaaaaatcag  4597300                                                                        =====================HOX2a_HOX2a                                                                        ==================HOX2a_HOX2a                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                       ===================HOX2a_HOX2a                                                                 =============HOX2a_HOX2a                                                                 ------>ZmHOX2a(1)                                                                 ==============HOX2a_HOX2a                                                             <---------SPL7       <---------ALFIN1                                                            <---------ANAC58 --------->ANAC58                                                       <----------DOF2--------->AGP1                                                      ===========================HOX2a_HOX2a                                                      ====================================HOX2a_HOX2a                                                      ==================HOX2a_HOX2a                                                      ------>ZmHOX2a(2)======================HOX2a_HOX2a                                                     =====================================HOX2a_HOX2a                                                     ============================HOX2a_HOX2a                                                     ===================HOX2a_HOX2a   ------>ZmHOX2a(1)                                                     <------ZmHOX2a(2)--------->ARR14(3)  <---------------------WRI1                        <---------ARR14(3)<---------ARR11(3) --------HSFC1(2)                         --------->YAB1    <---------ANAC58 --------->ANAC58 --------KAN4(1)                         ===============================HOX2a_HOX2a------>ZmHOX2a(1) --------HSFB2a(1)                       <------ZmHOX2a(2) ---------->ID1 ------>ZmHOX2a(1) ------->KAN4(1)                  ---------->DOF2   --------->ARR14(3)<---------ARR14(3) ------->HSFB2a(1)             --------->HSFC1(1)   --------->ARR14(2)--------->ARR14(2) ------->HSFC1(2)              <---------HSFB2a(2)  <---------ARR14(2)--------->ARR11(3) -------KAN4(2)   ------->TEIL --------->HSFB2a(2)  --------->ARR11(3)<---------GLK1(2) ------GLK1(2)    --------->GLK1(2)--------->DAG2   <---------ARR11(3)<---------ARR14(2) -->YAB1       --------->ANAC46<---------HSFC1(1)   --------->AGP1  ----------->ARR10 ===============   aatgttcgattcgatctacgaacctgtattcttcgagaaagcgatcatcgtcgagatctttgtcgtcctcaagatcctcaagctcctcctctgtcttctt  4597400                                                                                        <---------GLK1(1)                                                                                       <---------ARR14(2)                                                                                       <---------GLK1(2)                                                                                  --------->LBD16                                                   --------->ANAC46       <---------HSFB2a(1)                      --------->ZAT2            <---------ARR14(2)        --------->HSFB2a(1)                      <---------At4g35610       <---------ZAT14           <---------HSFC1(2)                      --------->At4g35610       --------->ARR14(2)       ------>NtERF2 --------->ARR14(2)                    <------ZmHOX2a(1)           --------->ZAT14         --------->ARR14(2)                ------>ZmHOX2a(1)           <------NtERF2              --------->ATERF1(1)               --------->TOE2(3)           --------->LBD16             <------NtERF2<--------P   ----              ------>ZmHOX2a(2)           --------->DEAR3(1)    ---------->DOF2 <---------LBD16  <---              =============HOX2a_HOX2a   <---------LBD16<------NtERF2 --------->LBD16 <----------TaMYB80        ----------->RAV1(2)             --------->LBD16--------->LBD16<---------ATERF1(1)   --------- ====================HOX2a_HOX2a        ------>NtERF2<---------LBD16<---------LBD16<---------MYB52(1)   atcaaaccatgcctgatccttaggagctgaagactcgtcttccgccggagtatacgccggaggtttgaaagccggagccttctccggtagattccccaat  4597500                                                               --------->LBD16           <---------HSFC1(2)                                                               ------>NtERF2             --------->HSFC1(2)                                                              --------->ANAC58          ------->TEIL        --------->ARR11(3)                                    --------->ANAC58       --------->ANAC46        <---------ARR11(3)                                    --------->ANAC46      ------>MYB46(1)       --------->GLK1(1)                               --------->YAB1             --------->TOE1(2) --------->LBD16                                      --------->ICU4              --------->AtMYB61 <---------At4g35610   --------->WRKY12          --------->ANAC58                 --------->TOE2(2) --------->At4g35610   ----------->HVH21         --------->ANAC58              ------->GAMYB ----->ARR14(2)      <---------At4g35610         --------->ANAC55(1)          --------->MYB46(3) ------ARR14(2)      --------->At4g35610  ------>ZmHOX2a(1)--------->GLK1(2)<-----------GT1   ------- >LBD16<---------GLK1(1)        ------>ZmHOX2a(1)--------->ANAC46    ---------->DOF2------>MYB83   ttccgctggatatcatcccattgagttgacgctccttcaatgtccttatacacgaaatgataatccgccatcaaagtataaccacctacgaagcttcaaa  4597600                                     ----------->HVH21                                  <---------ANAC58                                  <---------ANAC46                                     ---------->DOF2                               <---------WOX13(1)                        ---------->DOF2            -                 ----------->GT1  <---------ANAC58                    --------->HSFB2a(2)          --  <---------HSFB2a(1)   --------->DAG2                          <----------DOF2    --------->YAB1 --- --------->GLK1(2)<------ZmHOX2a(1)<----------DOF2             *TSS   <---------HSFB2a(2)         <-- --->DOF2------->TEIL  ---------->DOF2             ------>ZmHOX2a(2) <---------LBD16 <---------YAB1--   gagaacctttgaatctgagaggagaaaaagcagattgctttgacactctgtgatcgcaatctcgttctttctctggaaagacgaatgataaaaggccatc  4597700                                                                             --------->ARR11(3)                                                           <------MYB46(1)   <---------ARR11(3)   <------------CBF               ----------->GT1          <------MYB83 <-------GAMYB -------->LBD16                ----------->RAV1(2)         ----------->GT1 ----------->ARR10 ------->LBD16            --------->YAB1               <---------ARR14(2)<---------MYB52(1) ------>LBD16             <-----------GT1            <---------KAN4(2) ----------->GT1 -------HSFB2a(2)    ------------>CBF           <---------LBD16        <---------DEAR3(2)  <---------YAB1 ------->ANAC46   --------->DEAR3(2) <-------TEIL--------->LBD16 ---------->DOF2        <---------YAB1   cccgaaattggtctggctaaaccgacaattaccatctggtacatttcgaaccgggaatatttggtttaaaagccggttagatattggtttattattctag  4597800                                                                                    --------->AHL20(2)                                          <---------AHL20(2)                        <---------AHL20(2)                                       --------->AHL20(1)                        *TSS                                ----------->GT1                         --------->CCA1(2)                                <---------ANAC46                        <------ZmHOX2a(2)                            --------->HSFC1(2)                         --------->ARR14(2)                            <---------HSFC1(2)                         --------->ARR11(3)                            --------->HSFB2a(1)                        <---------ARR14(2)                            <---------HSFB2a(1)                        <---------ARR11(3)                      --------->SPL7  <---------AHL20(2)               --------->AGP1                     <---------MYB52(1)<---------AHL20(1)   <---------YAB1 --------->LBD16                    <---------SPL7  <-----------TBP     ------->TEIL ----------->ARR10    --------->MYB52(1)                <-----------GT1<-------TEIL  <---------YAB1<---------AHL20(2)   --------->ICU4   agtaatgtattagactcttaaccgttcggagggttcgtatatatattatgagagcatgtatttttatggagaagatccagagataattaaacaaacagtt  4597900                                                                                   --------->ZAT14                                                                                   <---------ZAT18                                                                                   <---------ZAT14                                                                              <---------ZAT2                                                                              --------->At4g35610                ----------->GT1                                               --------->ZAT2      --------->ARR11(3)                                                      <---------At4g35610 ---      <---------ARR11(3)       <------ZmHOX2a(2)                          ------>ZmHOX2a(2)   <------      <---------GLK1(2)--------->DAG2 <---------TOE1(3)                --------->ATHB12     <--------  ---------->DOF2     ---------->DOF2 <---------TOE2(3)               <---------YAB1       --------->ALFIN1   tagcaaaagattttgagagggagaaaaagggcgatcgattagggtttttgtgttttcgtcttagtatcgaagatgatcggagctgtgaactcggtggagg  4598000                                                            XXXXXXXXXXXXXXXXXXXX>MIR2938                                                            <----------DOF2                                                           =================HOX2a_HOX2a                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                         <---------ARR11(3)                                                    --------->ZAT14                                                  --------->ANAC46                                                <---------ALFIN1                                               --------->ZAT14                                               <---------ZAT18         <---------At4g35610       --------->TOE2(3) <---------LBD16       <---------ZAT14         --------->At4g35610    <---------DOF5.7(2) <---------LBD16    <-----------GT1==================HOX2a_HOX2a --------->YAB1 <---------TOE2(2)     ===========================HOX2a_HOX2a                        - -------->GT1   <---------TOE2(3)     ============================HOX2a_HOX2a                   <---- ---RAP2.6(2)   <---------TOE1(2)     <------ZmHOX2a(1)  --------->ARR11(3)                  <------- -MYB46(3)--------->WOX13(1)    <---------ZAT14--------->ZAT18       <------ZmHOX2a(1)     --------->DEAR3(1)   ctgtgataacgtcaatccaaggtttatcggggagtccagaggatttatctgcacttcacgatcttttgagaggagctcaagactcgctccgagccgaacc  4598100                                    ---------->DOF2                                  <---------HSFB2a(2)                                  --------->HSFB2a(2)                               ------>NtERF2                              --------->ANAC58                              --------->DEAR3(1)                              --------->ANAC46                              --------->ANAC58                   ------>ZmHOX2a(1)                            <---------ALFIN1                   <---------ANAC58                            <---------ATERF1(1)       <---------ANAC46                      <------MYB46(1)         <-----------GT1<---------ZAT2                <---------ANAC55(1)                   <------MYB83 ---------->GT1         --------->At4g35610        <---------MYB52(1)                      --------->MYB59 -------RAV1(2)         --------->ZAT2            <-----------HVH21        <-----------GT1 <---------TOE2(3) --ARR14(2)        <---------WRKY18(1)            <-------GAMYB<---------ANAC58      <--------P   aggtgttaatttctctactcttgaccagctcgacgcctcgaagcactctctcggttacctgtatttcctgtgagttttaacctattggtagattaggttt  4598200  Previous    Next  AGI:  At5g14240.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO14598.1); contains InterPro domain Phosducin (InterPro:IPR001200); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335) Range:  from: 4595931    to: 4597663    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14250.1    Description:  COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13). Identical to COP9 signalosome complex subunit 3 (CSN3) [Arabidopsis Thaliana] (GB:Q8W575;GB:Q93VY1;GB:Q9LYA4); similar to 26S proteasome regulatory subunit S3, putative (RPN3) [Arabidopsis thaliana] (TAIR:AT1G75990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14599.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 4597881    to: 4600764    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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