Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------HSFB2a(2)                                                                           <---------YAB1                                                                         --------->AHL20(2)             <---------MYB52(1)                                          <---------AHL20(2)           --------------->AGL15   --------->ATHB12                     <---------AHL20(1)           <---------------AGL15 --------->GLK1(2)                      --------->AHL20(1)     <---------ANAC58            --------->ARR11(3)                     <---------AHL20(2)     <---------ANAC58            <---------ARR11(3)              --------->TOE2(3)  --------->HSFB2a(2)  <----------DOF2               <---------GLK1(2)    <---------AHL20(2) --------->AHL20(2)       <<<< <----------DOF2              <---------TOE2(3)    <----------DOF2 --------->AHL20(2)          ------ <---------DAG2         --------->AHL20(2)     <---------TOE2(3) <----------DOF2 <---------YAB1<-----   tcgcctttcgtttctgttttttgcaaatatttaagaatctttggtcatttaggctttaatttagttactttaaatttatttttgttatagaagtattatg  4575800                                                             --------->YAB1                                                            <------ZmHOX2a(2)                                                            <---------ATHB12                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                     --------->GLK1(1)                                                     <----------TaMYB80                                                     --------->KAN4(1)                                                     <---------HSFB2a(1)                                                     <---------KAN4(1)                                                     <---------GLK1(1)                                                     --------->HSFB2a(1)                                                    --------->ARR14(2)    --------->YAB1                                                    <---------ARR14(2)   <---------AHL20(2)                                                    ---------->TaMYB80<---------AHL20(2)         <---------ANAC58                           <---------KAN4(2)<---------AHL20(2)         <---------ANAC46                         --------->LBD16    --------->AHL20(2)      ------>ZmHOX2a(1) <<<<<MYB98                                   <---------ARR14(2) <---------AHL20(2)   <---------YAB1 ----->GT1                                    --------->ARR14(2) --------->AHL20(2)<---------MYB52(1) ----YAB1<---------ANAC58   -------->P        --------->GLK1(2) --------->AHL20(2)<---------RAP2.6(3)   ttaaaaacagttcgtgttcatccttggactaaccagacgatttgacaaaatccgaatatccgatcataaaattaaataatcagccgttattgttcctcta  4575900                                  <----------DOF2                                                  --                   <---------ARR11(3)                                                             ---                   --------->ARR11(3)                 ------>NtERF2                               ===            <----------DOF2 ------>ZmHOX2a(1)        --------->DEAR3(1)                     ---------         <-----------GT1    --------->LBD16 <----------DOF2          <----------DOF2 --------->ATHB12        <-----------GT1   ----------->RAV1(2)      --------->At4g35610              <---------ATHB12   ctactacgttttaacttttaagaacttctcctggtactttgatgggctataagagcggcccaatatttcgactttaaaatgggccaatctttggtaaagg  4576000                                              <---------ANAC46                                              <---------ANAC58                                      --------->ANAC58                                      --------->ANAC46                                      --------->ANAC58              <----------DOF2   ------>ZmHOX2a(1)           <---------ANAC58    --------->TOE2(3)           <---------ANAC46    --------------->AGL15   --------->YAB1             ----------------->AGL2  <---------ATHB51            ----------------->AGL1                                        ---------  <---------ATHB12        <----------DOF2     <---------ANAC58                              --------- ---------->ATHB5 <<<<<<<<<TBF1<---------------AGL15   <---------ZAT2              <------ZmHOX2a(1) -------------->AGL3 <<<<<<<<<TBF1 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->YAB1  -- ==============================================MADS_MADS                          ----------->GT1  <- ->DOF2    <---------ANAC58   ----------------->AG     <---------At4g35610----------->GT1   ---------   cccaattatagtggcgcttcttcttcttcttttcctaaacaagcaatggcatggtttagctggtgagccagtttataggtaaaaaggataatttaagcca  4576100                                              ------>MYB46(1)                     --------->ANAC55(2)      ------>MYB83                     <---------ANAC46 --------->ZAT18                     <---------ANAC58 <---------ZAT18                     ----------->GT1  --------->ZAT14               <---------AHL20(2)   <-------MYC2               <----------DOF2             --------->TOE2(3)      ------->MYC2          ------>MYB83    <----------ID1   <---------ANAC55(2) <---------ALFIN1 ------>MYB46(1) >ANAC58     <----------DOF2        <-------MYC3        <---------MYB111(1) >ANAC58  --------->ARR11(3)        ------->MYC3        <---------MYB59                ------------>CBF ------->AHL20(2)    <---------ANAC58 <-------TEIL--------------->AtSPL8       <------------CBF --------AHL20(2)   <-----------------------TaNAC69(2)  <---------MYB46(2)   <---------YAB1 >ANAC46  <---------ARR11(3)      <-----------------------TaNAC69(2)       <-----------GT1       ----   tttaaaaaaacaaatctttaatggcgtaattcaaaaaacgtgcacacctatctaagtaccaaactctttatgttatataactattgtgacacaatttcaa  4576200                                                                        --------->LBD16                            <---------ARR14(2)                         --------->LBD16                            --------->ARR14(2)                         <---------LBD16                          <----------DOF2                             <---------ANAC46                         <---------ANAC46                             --------->LBD16                        <------NtERF2                                 <---------LBD16                       <---------RAP2.3(1)                           <---------LBD16                       ------>NtERF2                              <-----------HVH21                       <---------RRTF1(1)                         <---------SPL7                       <---------ERF1                            ------>ZmHOX2a(2)                       <---------ORA47(2)                       <------ZmHOX2a(2)                      <---------RAP2.6(2)                      --------->ARR11(3)                      <---------RAP2.3(2)                      <---------ARR11(3)                      <---------RRTF1(3)                       --------->ARR14(2)                      <---------RRTF1(2)                       <---------ARR14(2)                      <---------DREB2C(2)                      <---------ARR14(3)               -----                      <---------RAP2.3(3)                      <-----------ARR10               <-----                      <---------DEAR3(1)                       --------->ARR14(3)       ----------->HVH21    *TSS              <---------ANAC46  ------->TEIL       --------->YAB1           --------->ZAT14 ----->ARR14(2)--------->AHL20(2)    <---------MYB52(2)   <------ZmHOX2a(2) --------->GLK1(1)  <-----   atttgctaactcccaaaaaaaatggcggcgtttttgcaaacgaacatcagtctgaatgcgatcaagatcgtcccggggaaatacagttctctcaccgatc  4576300                                     <----------DOF2                                   --------->At4g35610                                   ------>NtERF2                                  --------->RAP2.3(2)                                  --------->DEAR3(1)                                 <------NtERF2                                 --------->DEAR4(2)                                 --------->ATERF1(1)                                 --------->RAP2.3(1)                                --------->ABI4(1)                                <---------RAP2.3(1)                                ------>NtERF2                                <---------ATERF1(1)                               --------->ATERF1(2)                               <---------ATERF1(2)                               --------->DEAR3(1)                               <---------DEAR3(1)                               --------->RRTF1(3)                               --------->RAP2.3(2)                               <---------ALFIN1                               --------->RRTF1(2)                               --------->RAP2.3(3)                              --------->ERF1                              --------->DEAR4(2)                              --------->RAP2.6(1)                              --------->RRTF1(1)                              --------->ATERF1(1)                              --------->DEAR3(2)                              --------->ORA47(2)                              <------NtERF2                             <---------RAP2.3(1)                             <---------ATERF1(1)                            <---------DEAR3(1)                           <---------ABI4(2)                           --------->ZAT18  --------->LBD16                           --------->ARR14(2)                          --------->ALFIN1<---------LBD16                      <---------ARR14(2)                        <------MYB46(1)  <---------ZAT2                        --------->ARR14(2)             <---------SPL7<-------TEIL--------->REM1(1)                     --------->LBD16        --------->SPL7  <---------ANAC58 ----------->RAV1(2)                --------->LBD16        --------->ZAT18 <---------ANAC58 <---------At4g35610               <-----------------AGL1     <---------ANAC58  --------->MYB59 <---------ALFIN1                    <---------LBD16   <-------     <---------ANAC46  --------->MYB111(1)--------->TOE1(2)                --------->HSFB2a(2)     <---------ANAC58  --------->MYB46(2)--------->ZAT2                    <---------HSFB2a(2) ---->YAB1  --------->DEAR3(1)--------->RAP2.3(1)                       <----------DOF2      -------- ----ATHB12<------NtERF2<------MYB83 <-----------HVH21----------->GT1 --------->At4g35610    <------- -ZmHOX2a(2)<---------ANAC46----------->TCP11(1)   --------->MYB52(1) <---------At4g35610    ========   atcagtttcgtgcgccgtatcgaattaggtgcgccgccgcttcacctgggaaaaaacggtataacatcgctctgcttcccggagacggtatcggtccaga  4576400                                                 <-------TEIL                                              --------->HSFC1(2)                                              <---------HSFB2a(1)                                              <---------HSFC1(2)                                              --------->HSFB2a(1)                                         --------->HSFB2a(2)                                         <---------HSFB2a(2)                                      ------>ZmHOX2a(2)                                     <---------GLK1(1)                                     --------->GLK1(1)                                    --------->ARR14(2)                                    <---------ARR14(2)                                    <---------AGP1       <-------GAMYB                --------->ARR11(3)      <-----------RAV1(1)           <---------ARR11(3) --HSFB2a(2)                   --------->At4g35610 <----------DOF2 ->HSFB2a(2)     <---------KAN4(2) <---------CCA1(2)     <----------DOF2                     <------- ----RAV1(2)  <---------TOE2(3)<---------ZAT2<---------TOE2(2)                               <------- =================RAV       ---------->DOF2  <---------TOE1(2)                 --------->MYB52(1)   agttatctctgttgctaagaatgtgcttcagaaagctggatctctcgaaggttctttctctttctcaatggtttttggaaacaacgagtgtgtttgctta  4576500                                                                        <---------At4g35610                                                                        --------->At4g35610                                                                        --------->ZAT2       <-------                                                                      <------ZmHOX2a(1)   <------MYB46(1)                                                                   <------NtERF2          <------MYB83                                                                 <---------ANAC46       <--------P                                                                 --------->ETT(1)      <-------GAMYB                                                               <-----------HVH21      <---------MYB46(3)                                                              ----------->HVH21       <------MYB83                     <----------DOF2                          <-----------RAV1(1)     <------MYB46(1)       --------->ATHB12                                     <---------ANAC58         <---------AtMYB61      <---------YAB1<---------ANAC58                        <---------ANAC58      <---------ARR14(2) --ANAC58           <---------ANAC58                    --------->At4g35610       --------->ARR14(2) --ANAC58       <----------DOF2   <------ZmHOX2a(1)     <---------GLK1(1)--------->ATERF1(1) --------   gccagtagatgattgtgtctttgcttttgtatcacaggactggagtttgatttcaaggagatgcctgtcggaggagcagccttggatttggttggagttc  4576600                       <------NtERF2                    --------->At4g35610                 <---------LBD16        <------ZmHOX2a(1)     <------NtERF2--------->ANAC46    --------->LBD16 <---------At4g35610  <---------LBD16<---------At5g28300         <---------YAB1                                 --------- --GLK1(1)    <-----------HVH21      --------->bZIP60(1)                              <----------DOF2 ->GLK1(1)   <----------DOF2       --------->At4g35610       <---------ANAC46 <---------ZAT14    ----   cattgccggaggaaactttcacggctgcaaaactatctgatgccattcttcttggagctattggagggtatgtgtgtgagtgctgtttctttagcaatct  4576700  Previous    Next  AGI:  At5g14200.1    Description:  3-isopropylmalate dehydrogenase, chloroplast, putative. Identical to 3-isopropylmalate dehydrogenase 3, chloroplast precursor (IMDH3) [Arabidopsis Thaliana] (GB:Q9FMT1;GB:Q8VXU4); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G80560.1); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G31180.1); similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (GB:P29102); contains InterPro domain 3-isopropylmalate dehydrogenase; (InterPro:IPR004429); contains InterPro domain Isocitrate/isopropylmala Range:  from: 4576204    to: 4578404    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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