Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------------AtSPL8     --------->YAB1 --->ARR11(3)                                                                                       - ----ARR14(2)                                               --------->AHL20(1)                      - --->ARR14(2)                                               <---------AHL20(1)            ----------- ----ARR11(3)              <-----------GT1                 --------->AHL20(2)             =========== --->GLK1(2)       --------->TOE2(3)                <----------ID1              --------->GLK1(2)  -- -->RVE1(1)        <----------DOF2               ---------->DOF2--------->MYB52(1)       ------->TEIL   ctgcatatcaaaatgtacaaactttagtttatcaatttgagttctgaagatgaaagaacaaatatataacgaagcatttgagattccaatgtacctgaag  4566600                                                                                           <---------        <------ZmHOX2a(1)                                                             <---------DOF5.7(2)       --------->ANAC46      --------->KAN4(2)                                       <---------WRKY12       --------->ANAC58     <---------HSFB2a(1)                                      <---------WRKY38(1)       --------->ANAC58     <---------HSFC1(2)                                      --------->DOF5.7(2)   ----------->RAV1(1)      --------->HSFB2a(1)                                    <-----------HVH21  <------NtERF2          <------ZmHOX2a(1)                                         --------->TOE2(3) -------->ANAC58 --------->ANAC58                                                 --------->ANAC58  - -------->ANAC58 --------->ANAC58           --------->ARR14(2)                   ------->TEIL      <- >RAV1(2)--------->ARR14(2) --------->HSFC1(2)                              --------->TOE2(3)     <-- ==============RAV      ----------->GT1     <---------ARR14(2)              --------->TOE1(3)<------- ------->RAP2.3(1)  ----------->RAV1(1)    <---------CCA1(2)       ---------->DOF2--------->ANAC58---   aggcgcaacaggaaacgagaagcaacaggaaaattctctgaaaccatatcgccattttgcttcaaactacaaagaaaaccttgaacgtcaacgcttcttg  4566700                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                       --------->AHL20(1)                                                                                       <---------AHL20(1)                                                                                       --------->AHL20(2)                                                                                       <---------ARR11(3)                                                                                       <---------AHL20(2)                                                                                       --------->ARR11(3)                                                                                      --------->AHL20(2)                             --------->AHL20(2)                                    <---------AHL20(2)                            <---------AHL20(1)                                  --------->YAB1 <-----                            <---------AHL20(2)                               --------->TOE2(3)------- -DOF2                      --------->AHL20(1)                              <---------ICU4    <------ ----->ZmHOX2a(2)     ----------->GT1                                       <--------HAHB4<---------AHL20(2) -----ZmHOX2a(2)    --------->ICU4<-----------GT1    ----------->HVH21     <---------YAB1 --------->AHL20(2) -------ARR14(2)  <---------AHL20(2)               ----------->GT1  --------->DAG2 <---------ICU4 --ANAC46        <---------AHL20(2)           --------->YAB1       ---------->DOF2--------->AHL20(2) ------>ARR14(2) --------->AHL20(2)        --------->YAB1       --------->YAB1<---------YAB1---------   gatccagtgaatgtgtctattaattagtaaaatatttaacgagaagaatgatgctgtaacatgttagcataaagttgatcattaataaatatattaataa  4566800  <----------DOF2 --->YAB1 -->HAHB4              <----------DOF2 ----ICU4     <---------ZAT14 ---ATHB1     <---------ZAT18    --------->ZAT18 -->ICU4      --------->ZAT18    <---------ZAT18                                   <---------ATHB12 ---ATHB51    --------->ZAT14    --------->ZAT14                        --------->ANAC58 >YAB1  --------->TOE2(3)        <---------ZAT14                        --------->ANAC58          <--   ttctctttcaccttagtggacttgtctttgagttgtgcacaaatgagaagactaaacacacagatggtttgaagaagccagggccatcatccatatagta  4566900                                                       <---------MYB46(3)                                                       <------MYB83                                                       <------MYB46(1)                                                       ----------->GT1                                                      <---------DEAR3(1)                                                      --------->MYB46(2)                                                      --------->MYB111(2)                                                      <---------AtMYB61                             <---------------AtSPL8   --------->MYB55(2)                          <---------ZAT6              --------->MYB111(1)                   <------MYB83                =================================HOX2a_HOX2a                                ---------                ------>ZmHOX2a(2)                 --------->DAG2                            <------MYB46(1)              --------->ARR11(3)          <------ZmHOX2a(1)                                --------->MYB59              <---------AGP1 --------------->AtSPL8  <--------P                           *TSS              <---------ARR14(2)         --------->ANAC46                             <---------AHL20(2)       <----------DOF2 >>>>>>>ZML2     <---------LBD16<---------MYB46(3)             --------->AHL20(2) -------AGP1  --------->ARR14(2)<-----------GT1 ---------->DOF2        --------->ZAT18--------->AHL20(2)   gaactgtgtctttttggatctggttctagtgtttgtacatttcaggaaacaaaaggttggtgaattgagagtgtgaacaatgttctatttaatttggtta  4567000                                                  <---------MYB59                                                 -------->ZAP1                                              --------->WRKY38(1)                                            <------------CBF                                         <---------ANAC46                                       <------MYB46(1)                                       <------MYB83    -------->ATHB1                                      --------->MYB111(1)                                      <---------DEAR3(1)         <-----------GT1                                      --------->MYB55(2)    <---------YAB1      ------>MYB83                    <---------MYB46(3)   <---------AHL20(1)      ------>MYB46(1)                 --------->MYB46(2)   <---------AHL20(2)    <---------MYB111(1)               --------->MYB111(2)<---------YAB1    <---------MYB46(2)                <---------AtMYB61--------->YAB1    <---------MYB59                  <---------MYB55(1)<---------ICU4  ------>MYB83                       <--------P<---------WRKY18(1) <---------At4g35610              -  -------->P                       --------->MYB55(2)  <--------HAHB4                     <----------  ------>MYB46(1)                  --------->ATHB12    --------->ATHB51                  <---------ICU4 -->GT1                            <---------MYB46(3) --------->ICU4              --------->AtLEC2  -   ctccaacctaactcttaactcactcttagactcttagtggttggtgtattgaccgaattattatttttaagcagtcttgaagacatacaaaacattgcat  4567100                                                                            --------->YAB1                                                                            -------->ATHB1                                                                           <---------AHL20(2)                                                                           <---------ATHB51                                <---------MYB59                            --------->AHL20(2)                                --------->TOE1(2)                          --------->ICU4                                --------->TOE2(2)             <---------YAB1<---------ICU4                        --------->AHL20(2)                   <---------AHL20(1)                       ----------->GT1                       --------->AHL20(1)                  <---------ANAC55(2)                        --------->ARR11(3)            <---------HSFC1(1)                  --------->ANAC55(2)     <---------ANAC58   <---------ARR11(3)            --------->HSFC1(1)                  --------->ANAC58        <---------ANAC58 --------->AHL20(1)              <---------HSFB2a(2) -------->YAB1    --------->ANAC46------>MYB46(1)          <---------ARR11(3)    <---------YAB1 --CBF     ---------->DOF2   <-----------GT1               <---------AHL20(1) <---------YAB1 ---------->GT1   --------->ANAC58------>MYB83         <---------MYB59  --------->AHL20(2) --------->HSFB2a(2)   aatcgtaaaaaacaaaagtcacgaaatgaaataacctactaaatacttgtggaattaccaaaatatttttgccataaattattatgtttttttctcgaac  4567200                                         <---------WOX13(1)                                      <---------YAB1                                  --------->ARR14(2)                                  <---------ARR14(2)                            --------->ICU4                                 <---------GLK1(1)                          <-----------HVH21                                 --------->GLK1(1)                         --------->bZIP60(2)                             --------->ANAC58                        <---------WOX13(1)         -----                             --------->ANAC58                       <------------CBF           ------                       ------->TEIL   ------>ZmHOX2a(1)            <<<<<<<<<RAP2.2      <----------DOF2                    <---------ANAC55(2) <------------CBF          <---------TOE2(3)    <---------ANAC58           <---------YAB1  ---------->DOF2                   <------MYB46(1)<-----------TGA1  -------  <-----------GT1   --------->ANAC55(2)--------->ATHB12      <------MYB83  --------->O2<---------ANAC58   atatatactgtatatgattactacgtatcaaaagcaaatcctgattgaatttggaatttgatttggtttagattgcctcgtcataactggctttagaaaa  4567300                                                                                       --------->HSFC1(2)                                                                                       <---------HSFB2a(1)                                                                                       --------->HSFB2a(1)                                                                                       <---------HSFC1(2)                                                                                       --------->ZAT2                                                                                       <---------ZAT2                                                                                       <---------At4g35610                                                                                     <------NtERF2                                                                                   <---------DEAR3(1)                                                                                   --------->ETT(1)                                                                                 <-----------HVH21                                    <----------DOF2                             <------MYB83                                   <---------ANAC58                             <------MYB46(1)        <---------ZAT18            <---------ANAC58                            <---------AtMYB61        --------->ZAT18       --------->CCA1(2)         <---------ARR11(3)    <---------WOX13(1)        <---------ZAT14      --------->ARR11(1)       --------->ANAC58       <---------ARR14(2)        --------->ZAT14      --------->ARR11(3)       --------->ANAC58    --------->ALFIN1       <--- ---------->DOF2             <---------ARR14(2)  --------->ANAC58       --------->ALFIN1     ------>ZmHOX2a(1) ------>GT1                 <<<<<<<<<RAP2.2      --------->ANAC58       <---------ANAC46     -------- --->DAG2              <----------DOF2           --------->ANAC46      --------->ALFIN1--------->At4g35610 --->DOF2       ----------->HVH21  <---------ANAC46 ---------->DOF2    <---------DEAR3(1)  ----------   gtaaaaagagtgcagtttgtgacgacttttagatatggctttgattcacaaacgtcaagctctcaattctaggggggtggattggtcggagcttcctgag  4567400                       --------->At4g35610                       <---------ZAT2                       <---------At4g35610                  --------->MYB52(2)                      ------>NtERF2                         <---------MYB46(3)                     <---------DEAR3(1)                   <---------MYB52(1)                    --------->ATERF1(1)                  <-------GAMYB                   <---------ATERF1(1)   <---------YAB1 <---------MYB46(3)             --------->ARR14(2)       --------->GLK1(1) <---------DEAR3(2)             <---------ARR14(2)      --------->ARR14(2)<---------RAP2.6(2)           <------MYB46(1)           <---------ARR14(2)<---------DEAR3(1)           <------MYB83----------->RAV1(2)      <---------STY1(2)              --------->ALFIN1 ---ZmHOX2a(1)    ----------->HVH21  <---------GLK1(2)<---------ZAT18   <---------ANAC46 ->LBD16 <---------WOX13(1)----------->ARR10    <---------ZAT2          <---------REM1(1) ->RAV1(2) <---------MYB46(3)    <---------LBD16--------->ZAT2   <---------ALFIN1 <---------LBD16   gatgtgatcagattggttctgcgacggctgagactctcggattttcatcgagctagggcggtttgttccacttggtgtagggtttggggagactgtgtct  4567500  Previous    Next  AGI:  At5g14150.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11420.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70048.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) Range:  from: 4565174    to: 4566990    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14160.1    Description:  F-box family protein. Identical to Putative F-box protein At5g14160 [Arabidopsis Thaliana] (GB:Q9FMT5); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G05970.1); similar to At3g03730-like protein [Arabidopsis lyrata] (GB:ABY60296.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 4567335    to: 4568469    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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