Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->ZAT2                                                                      <---------ZAT2                                                                      --------->At4g35610                                                                     ----------->RAV1(1)            -                                                           <----------DOF2                          -                                                <---------ZAT18     --------->ANAC46                -            ------>ZmHOX2a(1)                   --------->ZAT18  ------>MYB83        <---------ATHB12            ----------->HVH21                  --------->ANAC58  ------>MYB46(1)<---------ARR11(1)  -          ----------->RAV1(2)      <---------HSFB2a(2)   --------->At4g35610   <---------ARR14(1)  <-          --------->At4g35610      --------->HSFB2a(2)   <---------At4g35610 <---------ANAC58    <--- -------LBD16            --------->DAG2        --------->ANAC58  -------->P  <---------ANAC58   ----- -TEIL------->TEIL      ---------->DOF2      ---------->DOF2    ------>ZmHOX2a(1)  --------->WOX13(1)   tcgggatgaatctcctgacccgttgaaaaagcttcttctaaaacccaaaacgcactctgagctttcctacccagcacaagcgtatcaatgagggagcgat  4544900          --------->HSFB2a(2)          <---------HSFB2a(2)       --------->GLK1(2)     <---------HSFB2a(1)     <---------HSFC1(2)                                            <-----------------------TaNAC69(2) -------->ANAC46                                                  --------->MYB52(1) -------->ANAC55(1)                                              ----------->HVH21 -------->ANAC58                                                 ----------->TGA1 -------->ANAC58                                           <------NtERF2      ======================= --------LBD16                 <-----------GT1            --------->LBD16     ---------->DOF2 ------REM1(2)   --------->ARR11(3)                     <---------LBD16 ---------->DOF2 ---->CCA1(2)   <------ZmHOX2a(1)         ---------->DOF2<---------ANAC46--------->DAG2            --   acacggaagaatcgagaaggattttgttcgatttaacctgtttgaaaagagcgtccatggcggagaactgacgagaaagcgaaagagacttgaagataga  4545000              <---------ANAC58              <---------ANAC46              =========================MYC_MYB              <---------TGA1a          --------->DEAR3(1)              <---------O2           --------->ZAT2      --------->CCA1(2)              <---------ZAT2     --------->ARR14(2)              <---------At4g35610     --------->ARR11(3)              --------->At4g35610                            <---------ARR14(2)     --------->ARR11(1)         <---------At4g35610                             --------->At4g35610     <---------ARR14(2)        <---------MYB46(3)                               <---------At4g35610     <---------ARR11(3)  ----------->RAV1(2)                             --------->ICU4   ----------->ARR10   <---------ARR14(2) ----------------->AGL3         <---------YAB1 =======================bZIP_DOF--------->At4g35610  --------->MYB52(1)--------->YAB1--------->MYB52(1) --------->GT1<---------ANAC58<--------P--------->At4g35610           --------->ICU4--------->ARR14(2)   gtggtaagatatggagtcgtgagagtaacctggttgctgagcagcccaattgaagaaaccgagagcaagagaatgatgattcagcagaaacgggtctatg  4545100                                                                                                 ----                                                                                            ---------                                                                                    <---------At4g35610                                                                                    --------->ZAT2  -                                                                                    <---------ZAT2---                                                                           <---------ARR14(2)    <---         --------->ANAC58  ----------->TGA1                                --------->ARR14(2)   <----         --------->ANAC58  ----------->HVH21                 <---------ATHB12       --------->At4g35610  --------->ANAC58        <---------WOX13(1)               --------->WOX13(1)    <---------ZAT2------  --------->ANAC46       <---------ANAC58          --------->GLK1(2)      <---------CCA1(2) <--------  --------->ANAC58       <---------ANAC58     --------->REM1(2)           <---------GLK1(1)<---------ARR11(3)   actcgagccacaagcgaagggcttattgagtgacgaaaaccgagaccgtgaagactctgttcaatcaatggactccatatccgagcagctcgagagcttc  4545200                                                                     --------->TGA2(1)                                                                     <---------TGA2(1)                                                                     <---------TGA1a                                                                     --------->bZIP60(1)                                                                     <---------bZIP60(1)                                                                     --------->TGA1a                                                                     <---------O2                                                                     --------->O2                                                                     <---------ANAC46                                                                    <-----------STF1                                        --------->DEAR3(1)         <---------TGA2(2)         <---------At4g35610        --------->ZAT2                ----------->TGA1    <----------DOF2         <---------ALFIN1                      ----------->HVH21 ----->HSFB2a(2)        <------ZmHOX2a(2)                       <---------At4g35610 >At4g35610 --------->At4g35610     <---------ZAT2              --------->At4g35610 -------->ARR14(2)     <---------ARR14(2)     <---------TOE2(2) --------->ZAT2               ------>NtERF2 ------>LBD16          --------->ARR14(2)<-----------HVH21   ==================bZIP_DOF     --------- ------HSFB2a(2)   ------>NtERF2   --------->ANAC58          ---------->DOF2              --------->At4g35610 -----LBD16 <---------At4g35610    --------->ANAC58        <------NtERF2                  <---------At4g35610 --->MYB52(1)<-----------ARR10 --------->ANAC46            <---------HSFB2a(2)    <---------LBD16 -At4g35610 --------->ZAT2 ------>ZmHOX2a(1)  <---------TOE1(2)--------->GLK1(2) <---------LBD16   cggaaacttttagcagctctcggccgatcctcaccgcaagctccgtcgcaggtctcatggccgagaagctgacgtcaacattttcagggagtcgctgaca  4545300                <------MYB83                <------MYB46(1)               --------->MYB59                                           --------->ICU4            <---------ARR14(2)                                      ----------->GT1      --------->GLK1(1)    --------->ZAT18                         --------->DAG2 -->HVH21   --------->ARR14(2)<---------MYB52(1)                  ---------->DOF2   agttggagaaatcgaatttggttaatgagtccattagttagaagtcaaactcatactggcccagtccaaaaagtgatttttagtgacccaaaactttgca  4545400                      <-----------------AGL1                      <-----------------AGL2                      ----------------->AGL1                 <---------ANAC58                 <---------ANAC58                        --------->At5g28300                        -               <-----------GT1            --------->ARR14(2)                                        -            <---------ICU4                <---------ARR14(2)                                        <           --------->ICU4                 <---------ARR11(3)        ------------>CBF          <------           ------>ZmHOX2a(1)              --------->ARR11(3)     <---------ANAC58             -------           <---------YAB1                --------->RVE1(1)       <---------ANAC58             -------          --------->TOE2(3)              --------->CCA1(1)       <---------ANAC46     <------------CBF         <---------ICU4        ---------->ID1        --------->ANAC46  <------------CBF       <------   tacgagattaatccttattacttgcccatttttggcccatcaaatatctgcatacacacagtaaatgtcgttcaattgtttacatgagaattgagaagtt  4545500     <------ZmHOX2a(1)                             <----------DOF2 ----->ZmHOX2a(1)                               <-----------------AG                           ------ -------->HSFB2a(2)                           --------->TOE2(3)                            ------>MYB46(1) ---------HSFB2a(2)                         -------->P                               ----------->HVH21 ---HSFC1(2)                               ------->GAMYB----------->GT1           <------ZmHOX2a(1) -->HSFC1(2)                              <---------MYB111(2)            <---------ANAC46  ------>MYB83 -->HSFB2a(1)                             --------->MYB46(3)        --------->At4g35610  --------->MYB46(3) ---HSFB2a(1)  ------------>CBF  ----------->HVH21 <---------DAG2   <---------At4g35610--------->PCF2   tcctagaggaaaatgacaacaattcacaaccagacatgacaacaacaacctcactttttggtaattttgcagatggggtctataggagtgacccactaaa  4545600                                                                                 <---------------AGL15                                                                                 ====================                                                                              <-----------GT1                                                 <---------AHL20(1)         <---------AHL20(2)                                                 --------->AHL20(2)      <---------AHL20(2)                                                 --------->AHL20(1)      --------->AHL20(2)                                   <---------TOE1(3)                     <---------AHL20(1)        --                                   <---------TOE2(3)                     <---------ARR11(3)        <-                                  <---------At5g28300           ---------->DOF2 --------->ZAT6-------         ---------->DOF2  <---------ANAC55(2)    <---------AHL20(2)      --------->ARR11(3)   <------  --------->YAB1          --------->ANAC55(2)   <---------AHL20(2)       --------->AHL20(1)  -------- ---->DOF2   ---------->DOF2     <-----------GT1--------->AHL20(2)     --------->GLK1(2)    <--------   agaataagaagaaaagaaagaaaccattacatgttttacggtttcagtaattaaatttttgttttaaaaagagaatatattatctctacttgggaataat  4545700                                                            <---------WOX13(1)                                                          --------->ATHB12                                                         <---------YAB1                                                       --------->CCA1(2)                                                      --------->ARR11(1)                                                      <---------ARR11(3)         --------->CCA1(2)                                                      --------->ARR11(3)        --------->ARR14(2)                                                      <---------ARR14(2)        <---------ARR11(3)                      ----------->GT1                 --------->ARR14(2)        --------->ARR11(3) ============================================================MADS_MADS        ----------->ARR10 ------->ETT(2)     ---------->DOF2            ---------->DOF2 <---------TOE2(3)<---------ARR14(2) --------ETT(2)    <------ZmHOX2a(1)         <---------------AGL15      ============================= -->YAB1         <---------TOE2(3)           --------------->AGL15      ---------->DOF2 ---ICU4        --------->YAB1              ----------------->AGL2    --------->ANAC58 ->ICU4    <-------TEIL ----------->GT1     ----------------->AG <------ZmHOX2a(1)    --------->ETT(2) -KAN4(2) --------->CCA1(2)        <------ZmHOX2a(1)----------->ARR10 --------->ANAC58<---------ETT(2)   gtcgactgggagatacaataaggaaagtgaaaatataggataatataccaaaagaagatatgattgaggaacaagaaagggagatatgtcgacttatcga  4545800  Previous    Next  AGI:  At5g14080.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49047.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4543103    to: 4545258    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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