Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->GLK1(2)                                                                    <---------ARR14(2)                <---------ZAT18                                     --------->ARR14(2)                <---------ZAT14                                     <---------GLK1(2)       ---------->DOF2                                            ----------->ARR10 ------->DOF2   --------->ZAT14                         --------->YAB1 --->DOF2 <<<<<<<<<<<<<<<<<LFY                         <---------ATHB12   gaaagccgataaagacagtggacaatctcacatccaagatagatttcatgaagttcaaccatgatgctcagattctagctatagtctctacaatgaacaa  4535000                                                          --------->MYB52(1)                                                          ------>MYB46(1)                                                          ------>MYB83                                                        <---------MYB46(2)                                                        <---------MYB111(1)                                                        <---------MYB55(2)                                                        --------->MYB46(3)                                                        <---------MYB111(2)                                                        --------->AtMYB61                                                       --------->ANAC58                                                      ------>NtERF2                                                     --------->DEAR3(1)                                                    <------NtERF2                                                    --------->ERF1                                                   <---------RAP2.6(3)                                                   <---------ATERF1(1)                                                   <------NtERF2                                                   ------>NtERF2                                                  --------->DEAR3(1)                                                  <---------ATERF1(2)                                                  --------->ATERF1(2)                              --                                                  --------->ANAC46                                 <-                                        --------->HSFB2a(2)---------->DOF2                         --                                       <-----------------AGL1 --------->At4g35610                  --                                 ------->GAMYB    --------->ANAC58                                 --                                <------------AtMYB77--------->ATERF1(1)                            --      ---------->DOF2           --------->MYB46(3)--------->ANAC58                             <-----   <---------ZAT6               <------------MYB.PH3(1)--------->ANAC58             <---------ANAC46- ----------->GT1              --------->MYB52(1)  --------->RAP2.6(2)              ------>NtERF2  <--   aaacagtgtaaagctagtccatgttccatccctaaccgtcttctcaaactggccgccaccaaacagcacaatgcattaccctcgctgcctagacttcagc  4535100                                    ---------->DOF2                                  <------NtERF2                                 --------->LBD16         <----------DOF2        --------->ATERF1(2)        <---------ANAC58        --------->RAP2.6(2)        <---------ANAC58        --------->LBD16 ------->ANAC46                 <---------ATERF1(2)               --------->HSFB2a(2) --------HSFB2a(2)              <---------HSFB2a(2)         <--------HAHB4 ------->ANAC58                 <---------ANAC46            --------->ATHB12 ------->HSFB2a(2)              --------->HSFB2a(2)         <---------ICU4 ------->LBD16                 <---------LBD16              --------->YAB1           <----------DOF2 ------->ANAC58               ------>NtERF2                --------->ICU4<---------ANAC58 ----At4g35610             <---------At4g35610             <---------ATHB12     --------->ALFIN1 -------->LBD16            --------->At4g35610        --------->ANAC46   <---------ANAC58 -------LBD16          <---------SPL7--------->DAG2 <-----------GT1     --------->ATHB12           <-   cccggaagtggcttcatggctatggggaacgctgccggaaaagttttgctgtataaactccatcattaccagaatgcttgaagtggtctttaacaagggc  4535200                                                                                --------->YAB1                                                                             --------->WOX13(1)                                   --------->ANAC58                  --------->YAB1                              ---------->ID1                         --------->ATHB51                      <----------DOF2                        =====================HOX2a_HOX2a     <--                <---------ARR14(2) --------->ANAC58          ------>ZmHOX2a(1) <---------ATHB12  <---                --------->ARR14(2)<---------TOE1(2)       <-----------GT1  <------ZmHOX2a(2)   <-----        <---------MYB46(3)  <-----------RAV1(1)    <---------YAB1   <---------ATHB12    <-----------GT1 --------ARR14(2)   ------>ZmHOX2a(1)     <----------DOF2<-----------GT1 --------->WOX13(1)<---------   agttttgggattgttgtgtttcctctttttttgtcgcaagtactctttatgttatcaattttcctatccaattatcgatcaatgaaaaattttctttctg  4535300             --------->ZAT18                                  <------MYB46(1)     <---------AHL20(2)          <---------ANAC58                                    <------MYB83       --------->YAB1          <---------ANAC46                                   <---------------AtSPL8          <---------ANAC58                          --------->MYB46(3)          --------->AHL20(2) -------YAB1--------->ALFIN1                       -------->P--------------->AtSPL8                 - ------GLK1(2) <---------PCF2                    --------->MYB46(3)     --------->At4g35610<------ZmHOX2a(1) ----YAB1--------->ATHB12                >>>>>>>>>WRKY18     --------->MYB59  --------->YAB1    ----- -DOF2<------------CBF           <---------TOE1(2)--------->WOX13(1)  --------->YAB1    <-----------RAV1(2)   attcttgggattgagtgggccaagttttgttttctcacgattttgacagcatcaaccacttatttggtactatcatctaaaaataaaaatgcaggagaaa  4535400                                                        <---------ANAC58              <---------ICU4                            <---------ANAC58     --------->ARR14(2)            --------->TOE2(3)                           <---------ANAC46     <---------ARR14(2)    --------->ARR11(3)                 --------------->AGL15                --------->GLK1(1)    <---------ARR11(3)                 <---------------AGL15                <---------GLK1(1)   *TSS   --------->ICU4        ---------->DOF2    <---------ANAC58   ---------->DOF2 --------->DOF2      <---------------------WRI1    <---------ANAC58 ----------->HVH21           ----- ----->DOF2<---------ICU4    --------->ZAT6      <---------ZAT14  --------->At4g35610  --------->LBD16   aagaaagatgtcaacattatttcatggattaacacaaagtacaaattttagtagagtggcttactaatagctgaaagggtatctcgacccagagattgaa  4535500             <---------HSFB2a(2)                                                               ------       ----------------->AGL1                                                                ------>ZmHOX2a(1)    --------->DEAR3(1)                                                                      ---------   --------->MYB46(3)                                                                  <-----------GT1   --------->DEAR3(2)   --------->ANAC58                                          <----------DOF2  ------->TEIL          --------->ANAC58                                          <---------DAG2 -->TEIL     --------->HSFB2a(2)              <---------TOE1(2)                --------->RAP2.6(2)   tctgaaccgtccattctgggaagggcaaacaaaacagtgtttgtgtctcacgttctcttccttctctaatagagtcttaagccgctttttcactccttaa  4535600                                                  <---------MYB52(1)                                                 <-----------HVH21                                                <---------ETT(1)                                                ----------->HVH21                                                --------->ANAC46                                             <---------ARR14(2)                                         <------NtERF2                                        --------->LBD16                                        ------>NtERF2                                        <---------ATERF1(1)                    --------->HSFC1(2)                                       --------->ATERF1(2)                     --------->HSFB2a(1)                                       <---------DEAR3(1)      ----------->RAV1(2)                                       <---------ATERF1(2)     <---------At4g35610                                      <---------ORA47(1)       --------->ZAT2  <---------HSFB2a(1)                                 --------->ATERF1(1)         <-----------RAV1(2)                                 ----------->RAV1(2)     <---------DEAR3(2)    <---------HSFC1(2)   < ---->DOF2                 <---------LBD16   --------->ARR14(2)<---------ZAT2---------->DOF2<-------- >TOE2(3)  --------->TOE2(3)    ------>NtERF2--------->GLK1(2) --------->At4g35610       <xxxxxxxxxxx   acccaaaaaaaaacattagtactatttccttcggagcctggccggcgaatccgacaggtcgtttcagctgtgtccgaaggaaagttccaatttttatctg  4535700               --------------->AGL15              <-----------------AG              <-----------------AGL1              <-----------------AGL2              ----------------->AGL2              ----------------->AGL3            <---------ARR14(2)           --------->GLK1(1)           <---------GLK1(1)        --------->LBD16       --------->ANAC58       --------->ANAC58                                                                            --       --------->ANAC55(1)                                                                        <--      <---------LBD16<---------TOE1(3)                                                         ------    <---------REM1(2)<---------TOE2(3)                                                   --------->HSFB2a(2) -----------GT1<---------------AGL15          <-----------GT1                            <---------HSFB2a(2) ---GT1--------->ANAC46                 --------->HSFB2a(2)<---------LBD16               --------->HSFC1(1) xxxxxxxxxxxxsmallRNA(si3)     --------->ETT(2)  <----------DOF2             <----------DOF2  <------   tttttcttcacggaaatccagttaaggtaattgtctacatttctcgatttactttggtttctctgggttttgctgttttcttttctaatttctcgaatga  4535800       <---------ANAC58       <---------ANAC58  <---------ICU4 <---------YAB1     --------->ALFIN1 ------->YAB1     <---------ANAC46                                                --------->YAB1 -----TEIL        <---------ANAC58                                               <---------YAB1     < --->ATHB12       <---------ANAC58                                      <---------ANAC58        <---- ---ATHB12  <----------DOF2                                             <---------ANAC58     <-------   ttcatcatttcttgcatttggggtgatgaagaagcacaagtttacacattttctggtttatatgcttcacaagtgcttctcttatgatgttgtttattag  4535900  Previous    Next  AGI:  At5g14050.1    Description:  transducin family protein / WD-40 repeat family protein. Identical to U3 small nucleolar RNA-associated protein 18 homolog [Arabidopsis Thaliana] (GB:Q9FMU5); similar to TAF5 (TBP-ASSOCIATED FACTOR 5), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G25150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17049.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49884.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22639.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro Range:  from: 4533263    to: 4535303    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g14060.1    Description:  CARAB-AK-LYS (Lysine-sensitive aspartate kinase); amino acid binding / aspartate kinase. Identical to Aspartokinase 2, chloroplast precursor (AK2) [Arabidopsis Thaliana] (GB:O23653;GB:Q9FMU4;GB:Q9FY44); similar to AK-LYS1 (ASPARTATE KINASE 1) [Arabidopsis thaliana] (TAIR:AT5G13280.1); similar to aspartate kinase, lysine-sensitive, putative [Arabidopsis thaliana] (TAIR:AT3G02020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49092.1); similar to putative precursor monofunctional aspartokinase [Oryza sativa (japonica cultivar-group)] (GB:BAC84902.1); similar to precursor monofunctional aspartokinase [Glycine max] (GB:AAD41796.1 Range:  from: 4535403    to: 4539195    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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