Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------ARR14(2)                          --------->ARR14(2)                                        =================                          <---------AGP1                                            --------->TGA1a                          <-----------ARR10                                         --------->O2               ---------->DOF2        --------->ANAC55(2)                           <---------TGA1a             --------->ANAC58    ----------->GT1                                    <---------O2    -             --------->ANAC58   <---------TOE2(3)                               <-----------HVH21   <           --------->MYB52(1) ---------->DOF2                    <------ZmHOX2a(2)  <---------ANAC55(2)          --------->TOE1(2) ------>ZmHOX2a(2)       <---------ZAT18          <---------At5g28300    - --------At4g35610        ------->TEIL<---------ANAC55(2)----------->HVH21<-----------HVH21         < ------->At4g35610   --------->MYB52(1)  --------->MYB52(1)      ==============HOX2a_HOX2a        <-- -->YAB1 <---------MYB52(2)<------ZmHOX2a(2)        --------->ZAT18     <------ZmHOX2a(1)       -----   gagctcagaaaacaaacgaaagacaacggatctaaaggttacatacctgcatattgcacttgacgagatcgagaggagtcacggtcatgtgagtaagacc  4532700                                                                                        <---------TOE2(3)                            --------->At4g35610                                        --------->YAB1       --------->GLK1(1)--------->ANAC58                                       <---------At4g35610       <---------GLK1(1)--------->ANAC46                                       --------->At4g35610 =========================bZIP_DOF      <------MYB83                           --------->GLK1(1) -------->At4g35610     --------->ANAC58----------->GT1 <------ZmHOX2a(2)  <---------MYB46(3) ---------At4g35610  <-------TEIL       --------->At4g35610            <---------DEAR3(1)----------->GT1 -------->ZAT2 ---------->DOF2          <---------At4g35610      <---------LBD16  <-------TEIL ---------ZAT2--------->AtMYB61         <------MYB46(1)<---------ARR14(2)  --------->MYB55(2) ---------RAV1(2)   --------->CCA1(2) <-----------RAV1(2)       ----------->RAV1(2)   --------->ICU4- ---->AtMYB61--------->ANAC46<---------ANAC46          --------->ARR14(2) --------->ALFIN1<------ZmHOX2a(1)   acagctgagaattccaccaaaggtacaagcagcgtagaaggcaggtgaatacatctcgatccccttccctggctcggtgggagatgcaataaggaaattc  4532800                                     <------NtERF2                                    --------->LBD16                                   <---------ANAC46                                  --------->ATERF1(1)                                  <------NtERF2                                  <---------LBD16                                                   -                                 <---------ATERF1(1)                                                <                                 ------>NtERF2                                                      -                                <---------PCF5                                                      <                                --------->TCP20                                                     <                                <---------DEAR3(1)                                                  <                                --------->TCP15(1)                                              -----                                <---------PCF2                                                 ======                               <------NtERF2                                                =========               <---------SPL7  --------->ATERF1(1)                                          =========       <---------ATHB12       --------->LBD16      --------->HSFC1(1)                       <------ZmHOX2a(1)     --------->GLK1(1)        <---------ATERF1(1)  --------->HSFB2a(2)                   <---------HSFB2a(2) <---------HSFB2a(2)         --------->ALFIN1  <---------GLK1(1)                   ------->PIF5<----- --------->HSFB2a(2)    <------ZmHOX2a(1)      --------->GLK1(1)                   <-------PIF5====== --------->LBD16   <------ZmHOX2a(1)<------NtERF2  <---------HSFB2a(2)            ----------->RAV1(2) -------------------->WRI1  <---------LBD16<------ZmHOX2a(1)                   <---------At4g35610  -   ttccgagaaatcatcgacgtaggagaggaacgcggggccggagaaggagatttctcgaatgcagcgttggagttggaattgagcacctggtcgaggagga  4532900                                                                        <---------DEAR3(1)                                                                        <---------ANAC46                                                                        --------->ALFIN1                                                                       --------->At4g35610                                                                       <---------At4g35610                                                                       <---------LBD16                                                                       <------NtERF2                                                                       <---------ABI4(1)                                                                       --------->ATERF1(1)                                                                      <---------RAP2.3(1)                                                                      <---------ERF1                                                                      ------>NtERF2                                                                      <---------RRTF1(1)                                                                      <---------DEAR4(2)                                                                      <---------RAP2.6(1)                                                                      <---------ATERF1(1)                                                                      <---------ORA47(2)                                                                     <---------RRTF1(3)                                                                     --------->ALFIN1                                                                     <---------RAP2.3(2)                                                                     --------->DEAR3(1)                                                                     <---------ANAC46                                                                     <---------ATERF1(2)                                                                     --------->ATERF1(2)                                                                     <---------RAP2.3(3)                                                                     <---------RAP2.6(2)                                                                     <---------RRTF1(2)                                                                     <---------DEAR3(1)                                                                    --------->ATERF1(1)                                                                    --------->DREB2C(1)                                                                    <------NtERF2                                                                    <---------ABI4(1)                                                                    --------->At4g35610                                                                    --------->RAP2.3(1)                                                                    <---------At4g35610                                                                    --------->DEAR4(2)                                                                   ------>NtERF2                                                                   <---------RRTF1(1)                                                                   <---------DEAR4(2)        --------->At4g35610                                        <---------RAP2.6(1)   <---------LBD16                                                 <---------ATERF1(1)   <---------HSFB2a(2)                                             <---------ERF1  ------>ZmHOX2a(2)                                                <---------ORA47(2)  =================================HOX2a_HOX2a                     <---------RAP2.3(1) ==================================HOX2a_HOX2a                    <---------RAP2.6(2) <---------GLK1(1)                                                --------->ATERF1(2) <------ZmHOX2a(2)                                                <---------RAP2.3(3) -------->ARR14(2)                                                <---------ATERF1(2) ---------ARR14(2)                                                <---------DEAR3(1) -------->ARR11(3)                                                <---------DREB2C(2) ---------ARR11(3)                                                <---------ANAC46 ---------AGP1                                                    <---------RRTF1(3) ---------ARR14(3)                                                <---------RAP2.3(2) ----->DOF2                                             <---------HSFB2a(1) ========HOX2a_HOX2a                   <------ZmHOX2a(2)--------->HSFC1(2)<------NtERF2 ========HOX2a_HOX2a           --------->ZAT2           --------->HSFB2a(1) =======HOX2a_HOX2a            <---------ZAT2      <---------------------WRI1    <------ZmHOX2a(1) -ZmHOX2a(1)                <------ZmHOX2a(1) --------->GLK1(1)  --------->RAP2.6(3)          <------ =======HOX2a_HOX2a         ==================HOX2a_HOX2a --------->GLK1(2)  <------ZmHOX2a(1)<------ -------->ARR14(3) <---------YAB1 <---------LBD16  <---------LBD16<---------RRTF1(2)          <------   aagatctcggagatgaagatgatgaatagaggaagctcgggatcagagaattcttcggagattccatggcggcggcggaggaaggagatggagatagcgt  4533000                                          --------->ANAC58                                          --------->ANAC58                                        <--                                  ------>ZmHOX2a(2)                     *TSS                     ----                                 <------ZmHOX2a(2)                     ----------->GT1         <-----                              --------->LBD16<----------DOF2          <---------TOE2(3)        <-----        --------->CCA1(2)<XXXXXXXXXXXXXXXXXXXXMIR832-5P             <---------ATHB12      <---------LBD16 ---ANAC58     <------NtERF2 <---------HSFB2a(2)            --------->ANAC58      <---------HSFB2a(2) ---ANAC58   <---------DEAR3(1) <---------ARR14(2)          --------->ANAC58   --------->ZAT6  ------ ---ANAC46  --------->ATERF1(1) --------->ARR14(2)        ---------->DOF2    <-----------GT1  <------   ttgaaatgagagacggaggcgatgtttgattcccgatctcactcacgctttgccaaaaccaaaagcaccaatgaggtattaactctcgaaactcgggctt  4533100                                                --------->ANAC58                                                <---------ANAC55(2)                                           --------->YAB1                                           <--------HAHB4                                           <---------ICU4                               <---------ARR14(2)            --------->GLK1(2)  --------->ARR14(2)     ----------->HVH21 ----------CBF                <----------TaMYB80<---------YAB1 ----->ATHB12<---------At4g35610   <----------DOF2---------->DOF2     <-----------------AGL1 -----DOF2 <---------GLK1(2) ---------->TaMYB80 --------->ANAC58    <-----------GT1      <---------DAG2 ----------AGL15         --------->ANAC46 <---------YAB1      <---------YAB1             <----------DOF2 --------->AGL15         --------->ANAC58 <---------ATHB51  ----------->GT1<---------ANAC58 -----------AGL1         --------->ANAC58 --------->ICU4  <------------CBF <---------ANAC58   tattgggcaaatggaatctgatggaacaaggcatatactttgcgataattacgaaagtgacattgttattttacctgtcttggcccatgggctttttcaa  4533200                      ---------->DOF2              <---------WRKY18(1)             --------->WRKY38(1)                                  <----------DOF2             ----------->HVH21       <----------ID1            *TSS  <-----------RAV1(1)             --------->WRKY45      --------->MYB52(1) <---------AHL20(2)                     --------             --------->WRKY12----------->GT1  ------------>CBF<---------CCA1(2)     --------->GLK1(2)            <---------MYB52(1)     <-----------GT1   <---------YAB1  <---------MYB46(3)      --------   gagacataagacccgttgacccattaaagggctgtattaacgacaagttccaatttttatttgtttatcttttgttggaaaatgaaattctaaaacccta  4533300                                       --------->MYB52(1)                                       <---------At5g28300                                ----------->RAV1(1)                                ------>NtERF2                               --------->DREB2C(2)                               ----------->HVH21                               <---------ETT(1)                               --------->At1g77200                               --------->RAP2.3(3)                 <---------TOE2(3)                               --------->DEAR3(1)                 <---------DOF5.7(2)      -------->P               --------->DEAR4(1)                <---------WRKY45      ------>MYB46(1)         --------->RAP2.3(1)                <---------WRKY38(1)      ------>MYB83    --------->ARR11(3)      <---------REM1(2)  <---------WRKY12 ->TOE1(3)            <---------ARR11(3)  --------->ANAC46      --------->DOF5.7(2)            ------ ->TOE2(3)           --------->At4g35610<---------LBD16    <---------ZAT2             --------->ATHB12   aaaaatccaaccagaagggtagaagctctctcgccgacaattaccggctacaaggtttctctgctcgtcaacgttgtaagttatttcttcattgtaatca  4533400                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                                                                        ------->TEIL                                                                                        --------->GLK1(2)                                                                        --------->YAB1  <-----------ARR10                                                                      <---------WOX13(1)<---------ARR11(1)                                                                  --------->ANAC55(2)  <---------CCA1(2)              <------MYB83                                        <---------ANAC46     <---------ARR14(1)              ----------->GT1                  --------->LBD16    <---------ANAC55(2)<---------ANAC58              <------MYB46(1)<----------DOF2   --------->ANAC46 <-----------GT1  <---------ANAC58   <     <---------AtLEC2       <---------ANAC58  --------->HSFB2a(2) <---------TOE2(3)  <---------ANAC58   <XXXXXXXXXXXXXXXXXXXXMIR778          --------->ICU4   --------->At4g35610     <---------ANAC58<--- --->YAB1    --------->MYB59<---------ANAC58  <---------HSFB2a(2)<---------LBD16--------->ZAT2<------   aatttgtgcatgaattaggtcaaattagtagcttttgtagtaattcttcccgaaatgagagcttaattacggattgataacgagcttgcgaatcttatcg  4533500             <---------ZAT2             --------->ZAT2             --------->At4g35610                                                            ---------             <---------At4g35610                                                            ---------            ------->TEIL                                                               <---------At4g35610  --------->MYB52(2)                                               --------->MYB52(1)  --------->At4g35610 ---------ANAC46                 ---------->DOF2               --------->DAG2        <------ZmHOX2a(1) ------MYB52(1)       --------->ATHB12                      --------->LBD16 <---------AHL20(2)   <--- ---YAB1 --------->AtLEC2<---------ZAT6     <---------CCA1(2) ---------->DOF2---------->DOF2---------   ttgtttgtttcatgcagctctgaattagtggtattgaaagatgagcttatctcagaatgctccgaaaagtaagggtattaaaagagaggagctcaagaaa  4533600  Previous    Next  AGI:  At5g14040.1    Description:  mitochondrial phosphate transporter. similar to mitochondrial phosphate transporter, putative [Arabidopsis thaliana] (TAIR:AT3G48850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49083.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) Range:  from: 4530645    to: 4533072    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g14050.1    Description:  transducin family protein / WD-40 repeat family protein. Identical to U3 small nucleolar RNA-associated protein 18 homolog [Arabidopsis Thaliana] (GB:Q9FMU5); similar to TAF5 (TBP-ASSOCIATED FACTOR 5), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G25150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17049.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49884.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22639.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro Range:  from: 4533263    to: 4535303    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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