Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ANAC58                                                     --------->ANAC58                                                     --------->ANAC46                                                   <---------AtLEC2                                                  --------->ZAT14                                                  <---------ZAT14                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                               --------->CCA1(2)     <---------ARR14(2)              <---------HSFB2a(2)     --------->ARR14(2)       --------->ALFIN1<---------ARR11(3)   <---------MYB46(3)       <---------ANAC46  --------->ARR11(3)   <---------DEAR3(2)<------ZmHOX2a(2)        --------->AGP1   <------MYB46(1)  <---------ARR14(2)        <---------AGP1   <------MYB83------>ZmHOX2a(1)     --------->HSFB2a(2)     ------->TEIL  <---------DEAR3(1)--------->ARR14(2)        <-----------ARR10 -------AtMYB61=============HOX2a_HOX2a       --------->ARR14(2)    --------->At4g35610      <------ZmHOX2a(1) ------P ===================HOX2a_HOX2a       <---------ARR14(3)    <---------At4g35610     --------- -->LBD16------>ZmHOX2a(1)  <---------ANAC58  --------->ARR14(3) <-----------HVH21       <---------ANAC46 --LBD16<---------ANAC58    <---------ANAC58  <---------ARR14(2)<-----------RAV1(1)     <------NtERF2 -LBD16 <---------ANAC58---------->DOF2     ----------->ARR10--------->GLK1(2)        <---------DEAR3(1)   gtagtcggttccttatcctgcagatcgaaagcgtggagtctcgaagaagatctgcacggtatgaatctgtcgctgcaagtcgatttagacggcgaggata  4470600                                                                             ========================                                                                             <-----------------AGL1                                                                             <-----------------AG                                                                        <-------TEIL                                                                       --------->CCA1(2)                   --------->At4g35610                              <---------KAN4(2)           --------->ANAC58                                     --------->HSFB2a(2)           --------->ANAC46                                     <---------HSFB2a(2)           --------->ANAC58              --------->MYB52(1)     --------->LBD16  <---------ARR14(2)          --------->LBD16             --------->ANAC58         <---------ANAC46  --------->ARR14(2)    <---------GLK1(1)                 --------->ANAC58        <---------LBD16<-----------------AGL2 -->GT1 --------->TOE1(2)             --------->ANAC46<-------TEIL  ----------->ARR10       <--------   aactcgaaatcccacgaaatgagctcgaaaacgtttctaaacgcaacgaagtctggttcatccctgcgggaagattcaaaccggttttggtactctgtgg  4470700                                       <------NtERF2                                     --------->ETT(1)                                  <------MYB83        <---------LBD16           <------MYB46(1)      --------->ARR14(2)         <---------MYB46(3)      <---------ARR14(2)         --------->MYB59  <-----------------AGL3         <---------AtMYB61    --------->TOE1(2)  <-----------------AGL2--------->ANAC58             ------->GAMYB ------>NtERF2          --------->ANAC58          --------->MYB52(1)                     <---------DAG2 ===================MADS_MADS  <---------MYB52(1)--------->MYB46(3)     ---------->DOF2  <----------DOF2 ---RAV1(1)           ---------->DOF2<---------DEAR3(1)   <------ZmHOX2a(1)  --------->GLK1(2)   cgatgccatttctgggttctattcgaaagcacggtttggtcggagattgaaacaaccgtaggagagaagattgcaaaagaatcgaagagagctttatctc  4470800                                                                                                 ----                                                           <---------MYB46(3)                   <----                                                        --------->YAB1                          <----                                                       <---------YAB1                           -----                                                     --------->YAB1                     <------ZmHOX2a(1)                                                     <---------ICU4                     =============                                                    <---------ATHB51                    =============                                                    --------->ICU4         <---------YAB1      ------                                                <---------WRKY12          --------->AHL20(2)   <-----                                              --------->At5g28300        <---------------AGL15 <-----                      <---------------AGL15   <-----------HVH21        --------->AHL20(2) --------->At4g35610                      ===================================================================MADS_MADS         ---------->ID1                      ----------->GT1    <------NtERF2    ====================         <-----------GT1 --------->DAG2      ------->GAMYB<---------AtMYB61<---------AHL20(2)  <-----        <-----------GT1 ---------->DOF2     --------->MYB46(3)--------->ETT(1)   <------ZmHOX2a(1)<-- <----------DOF2<----------DOF2           --------->MYB52(1)  <---------DEAR3(1) ====================   tctctttttttttcccttcttttgcgaaaagtagtaatgttctccaacggtcaaattatgatggtcggagagattatataataggaaataggagcgggat  4470900                                                                     ------>ZmHOX2a(2)                                                                     ================HOX2a_HOX2a                                                                    =================HOX2a_HOX2a                                                                    <------ZmHOX2a(2)                                                                   --------->ARR14(2)     <---------LBD16                                               <---------AGP1 <---------YAB1                                                    <-----------ARR10 -->ZmHOX2a(2)                                                     --------->ARR14(3) -----At4g35610                                                    <---------ARR14(2) --ZmHOX2a(2)                                                      --------->AGP1 ---->At4g35610                                                    <---------ARR11(3)         ------- ===HOX2a_HOX2a                                                    <---------ARR14(3)         *TSS ==HOX2a_HOX2a                                                     --------->ARR11(3)         <------ --->ARR14(2)                                                     <---------At4g35610    --------->ARR11(3) ----AGP1                                  <---------HSFB2a(2)    <---------CCA1(2)      <---------ARR11(3) ----ARR11(3)                              --------->HSFB2a(2)<-----------HVH21  <---------ANAC58 ===HOX2a_HOX2a                           <---------LBD16   --------->MYB46(3)   <---------ANAC58 ----ARR14(2)                          <---------GLK1(1)  --------->MYB52(1)     <---------ANAC46 -------YAB1                      <-----------GT1<-------TEIL------->GAMYB    ------>ZmHOX2a(1)    <- ==HOX2a_HOX2a                  <---------YAB1 <---------GLK1(1) ----------->ARR10   ---------->DOF2   ctgattatcgggacatttatgtcataaatcatctattatcgatttctggagttcatgctccaacggtcagatcttgggtcctagcgtaaaagataatcaa  4471000                                                                              ===================bZIP_DOF                                                                              <----------DOF2                                                                             <---------ANAC58                                                                         ------->PIF5                                                                         ------->MYC3                                                                         <-------MYC3                                                                         <-------MYC2                                                                         <-------PIF5                                                                         ------->MYC2                                                                        <---------ANAC58                                                                  ---------->DOF2                                                                  ===============================bZIP_DOF                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                               <---------MYB46(3)                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                              xxxxxxxxxxxxxxxx>smallRNA(i)        <--                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---                                                             xxxxxxxxxxxxxxxx>smallRNA(s)        xxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(se3)         xxxx                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(fl3)     <-------                                                        <---------At4g35610  <---------ANAC58<-------                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxx                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxx                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->HVH21                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxx                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxx                                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ALFIN1                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <-------MYC2                                                   xxxxxxxxxxxxxxxx>smallRNA(s)         ------->PIF5                                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)      ------->MYC3                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->O2                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------TGA1a                                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->TGA1a                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->PIF3(3)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------->MYC4                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)>>>>>>>>>>AtbZIP1                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC46                                                   xxxxxxxxxxxxxxxx>smallRNA(i)        <---------PIF3(3)                                                   *TSS --------->At4g35610  <---------ANAC46<-------                                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxx                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------bZIP60(2)                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------GT1xxxx                              <---------ZAT14      xxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB46(3)                     <---------AHL20(2)            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)---------------->PIF3(2)                 <---------AHL20(2)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------O2xx       <---------AHL20(1)     --------->ZAT14      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-------PIF5    --------->AHL20(2)--------->YAB1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------MYC4    --------->YAB1<---------AHL20(2)              <---------RAP2.6(3)   <---------ANAC58<-------MYC3 -->YAB1         --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------->MYC2x ---ICU4    ------------>CBF  --------->ZAT18    --------->RAP2.6(2)    --------->ALFIN1xxxxxxxxxxxxx --------YAB1 --------->WOX13(1)            ---------->DOF2  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------   tatgaataatatatgtcaattaaataatcaagtgctcagtaatcaacaaagccgtcttagctcagtggtagagcgcgtggcttttaaccacgtggccgtg  4471100        <---------ALFIN1        ----------->RAV1(1)       xxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)    <------ZmHOX2a(2)    xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s) -------PCF2 ------DEAR3(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----MYB52(1) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --ANAC46 --ANAC58 xxxxxx>smallRNA(s) xxxxx>smallRNA(s) xxx>smallRNA(le3)                                                    <------MYB46(1) xxxx>smallRNA(le3)                                                   <------MYB83 --ANAC58                                                          <---------MYB52(1) xx>smallRNA(s)     --------->GLK1(2)                         -------->P xxxxxxxxxxxx>smallRNA(s)                                     --------->MYB52(1) xxxxxxxxxxxxxx>smallRNA(s)<---------------AtSPL8    <---------ANAC58--------->MYB59 xxxxxxxxxxxxxxx>smallRNA(s)                         <---------ANAC58<---------AtMYB61      <-------- xxx>smallRNA(s)<------NtERF2  <-------TEIL ---------->ID1  ------>ZmHOX2a(1)              <---------MYB52(1) --->ALFIN1   <---------DEAR3(1)       <---------MYB52(1)---------->ID1          <----------DOF2   ggttcgatccccacagacggcgattctattgagtacattcagttttgtcttcttgtcttgtccttaccggtttggtccgaaaacttttagtctgtttttt  4471200                                                                                         --------->ANAC58                                     --------->ZAT14                                     --------->ANAC58                                     <---------ZAT14                                    --------->WOX13(1)                                     --------->ABI4(2)                               --------->ANAC58                                 <---------DEAR3(1)                                ---------->DOF2      --------->CCA1(2)     --------->ANAC46                                    *TSS --------->ANAC58    <------ZmHOX2a(1)   ------>MYB83 --------->ZAT18                          --------------->AGL15  <---------TOE1(3)   <---------MYB59<---------ZAT18                          <---------------AGL15  <---------TOE2(3)   --------->AtMYB61                                       --------->TOE2(3) --DOF2 ----------->TBP ------>MYB46(1)                    <-----------GT1 <-----------GT1<---------ATHB12   ggtttaggatataaaaactccaaaccaaacccgactcggtgcacttacttcaaaacgagtttaaccattcttatattttacctttgaaagcaatcaattc  4471300                                                                                           <------NtERF2                                                                                         --------->RAP2.6(2)                                                                                         --------->RAP2.3(3)                                                                                         --------->DREB2C(2)                                                                                         --------->RRTF1(2)                                                                                         --------->RRTF1(3)                                                                                         --------->ANAC46                                                                                         --------->DEAR3(1)                                                                                         --------->RAP2.3(2)                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                        --------->ERF1                                                                                       <---------ATERF1(1)                          <-----------TGA1                                            <---------DEAR3(1)                         <---------ANAC58                                          --------->At4g35610                         <---------bZIP60(1)                   --------->RAP2.6(3) <---------At4g35610                         --------->bZIP60(1)               <---------ICU4          --------->ZAT2                   <---------TOE1(3)                --------->HSFC1(1)             <---------ZAT2                   <---------TOE2(3)                <---------HSFB2a(2)        --------->ALFIN1              <----------DOF2                       <---------HSFC1(1)--------->MYB52(1)--------->RAP2.3(1)           ----------->GT1<-----------HVH21         --------->HSFB2a(2)     --------->DAG2--------->LBD16      ---------->DOF2    <---------ANAC58   ------>ZmHOX2a(1)<---------YAB1---------->DOF2------>NtERF2   cattccatcaaaggggtttttagggtttcgtcactcgccgataatcctctctctctagaaaacatgactgccgaacagaaagtggagctcgccgccaaat  4471400                                                                                                   --                                                                                                   --                                                                                                   --                                                                                           <---------GLK1(2)                      <---------ICU4           ---------->ID1                              --------->ARR14(2)                     --------->ICU4    <---------DAG2                                      <---------ARR14(2)            <------ZmHOX2a(2)       <-----------GT1<----------DOF2                    <---------At4g35610           --------->ARR11(3)   <------------------------ANAC81                       --------->At4g35610           <---------ARR11(3) <----------DOF2 <------------------------ANAC81   --------->ATHB12  <--    --------->At4g35610<-----------GT1 <----------DOF2     <-----------GT1     --------->ICU4<-------TEIL   tggaagagcagaagatcgatgtaattatctctctttttctactttttttgtttcttttttttttcatttcaaagtctgaaaatgatttagctggattcgt  4471500  Previous    Next  AGI:  At5g13840.1    Description:  WD-40 repeat family protein. similar to signal transducer [Arabidopsis thaliana] (TAIR:AT4G22910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69179.1); similar to WD-repeat cell cycle regulatory protein [Glycine max] (GB:AAS13372.1); similar to B-type cell cycle switch protein ccs52B [Medicago truncatula] (GB:AAQ72359.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Cdc20/Fizzy (InterPro:IPR000002) Range:  from: 4468511    to: 4470994    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g13845.1    Description:  pre-tRNA. tRNA-Lys (anticodon: TTT) Range:  from: 4471051    to: 4471122    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g13850.1    Description:  NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3). Identical to Nascent polypeptide-associated complex subunit alpha-like protein 3 [Arabidopsis Thaliana] (GB:Q6ICZ8;GB:Q9FFY7); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT3G12390.1); similar to alpha chain of nascent polypeptide associated complex [Nicotiana benthamiana] (GB:BAF46352.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715) Range:  from: 4471280    to: 4472857    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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