Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(1)           --------->HSFB2a(2)           <---------HSFB2a(2)    --------->ARR11(3)         ----------->RAV1(2)      <---------ARR11(3)    --------->ARR14(2)            --------->ARR14(2)                   --------->YAB1 ------->ZAT14                    <---------GLK1(2)             <----------ID1 --------ZAT14                    <---------ARR14(2)        --------->CCA1(2) --------ZAT18                 --------->YAB1             --------->CCA1(2)                         - --->AtMYB61                  <---------ATHB12           --------->ARR11(3)                  <------- -ALFIN1------>ZmHOX2a(1)   --------->WOX13(1)           <---------ARR11(3)    <---------GLK1(2)    <   ctgcacaatcctcctggaggttctaaacagcaatcagattttcaaaaaaacaatttcaagatatatgagacaagaatgaatgattctcacctctgcttta  4450400                               ---------->DOF2                            --------->HSFB2a(2)                            <---------HSFB2a(2)                           <---------LBD16                         <---------ARR11(1)                         --------->ARR14(2)                        <---------ARR14(1)                        <---------CCA1(2)                      --------------->AGL15                      <---------------AGL15                     ----------------->AG                     ----------------->AGL2                     <-----------------AG                     <-----------------AGL3                     <-----------------AGL2                     ----------------->AGL1                     <-----------------AGL1                <---------MYB46(3)       --------->ARR11(3)<---------ARR14(2)                                                   -------       <---------ARR11(3)------->TEIL                                                  --------->At4g35610 -------->At4g35610 <---------At5g28300                                                <---------At4g35610 ---DOF2<---------GLK1(1)--------->GLK1(2)                                  <------ZmHOX2a(1)<------- ---------At4g35610<-----------GT1                          --------->YAB1--------->MYB59  --------->WOX13(1)   gaagctgaagaactctggtgattaccgtatctggaaagtgtttgcttcattctaaaatcaaatgagaattcaaaattaggactctcttcagctcaatcag  4450500                                                 --------->LBD16                                                --------->LBD16                    --------->ANAC58            --------->ANAC46                 --------->ANAC58                    --------->ANAC58           --------->HSFB2a(2)               --------->AtLEC2              --------->MYB46(3)               <---------HSFB2a(2)          --------->ANAC58         --------->TOE2(3)                  <---------ARR14(2)              --------->ANAC58  <----------DOF2   --------->AtLEC2    <---------At5g28300            --------->ANAC58 -->YAB1 --------->TOE1(3)             --------->YAB1                  --------->ANAC58 --ATHB12--------->YAB1             --------->WOX13(1)          --------->YAB1   --------->ANAC58   -   aaaacttttaatcttaacaaacatgcaaaaacaaaaatcaattacagttcccgaaatcgattctaatcacaacaagacaagacatgcaaaaacaaaattg  4450600                                           <---------ANAC58                                           <---------ANAC58                 <-----------GT1         <---------ARR11(3)            <---------At4g35610     ----------->GT1                     --------->ARR11(3)       ----------->HVH21    ---------->DOF2   ---------->DOF2                 <---------HSFB2a(2)  --------->HSFB2a(2)     <---------At4g35610<- -------->YAB1<---------ZAT6       --------->HSFB2a(2)  <---------HSFB2a(2)     --------->At4g35610--   aatcaaaaagaaataagtgttacccagtactggagtactcgaagagcttgccagacttagagaagacgatgacagcaacttcagcatcacaaagaacaga  4450700                                                      <---------At4g35610                --------->ANAC55(2)            <---------ANAC58             <----------DOF2                <---------ANAC55(2)            <---------bZIP60(2)        ------>ZmHOX2a(1)   -------         <----------DOF2                 --------->DAG2                <------ZmHOX2a(2)      -------   ----------------------->TaNAC69(2)   ---------->DOF2               <---------ARR14(2)      ------- --------At4g35610          --------->ANAC58   <---------ANAC46       --------->ARR14(2)      ------- ------->At4g35610          --------->ANAC58   <---------ANAC58    <---------HSFB2a(2)        -------   gagctcacgagctttcttaagtaacccagaacgcctcttggaaaaagtgacttgtctgctattcgcattctcgatcctctttatctcgatttttccacga  4450800                                                                        =============================                                                                        =============================                                                                        <---------------AGL15                                                                        --------------->AGL15                                                                       ----------------->AGL1        --------->LBD16                                                ============================== -->ANAC46                                                   <-------TEIL -->ANAC58                                                ----------->GT1 ---->HVH21                                   >>>>>>>>>TBF1  ------------>CBF               <-------- -->ANAC58                                    *TSS    <------ZmHOX2a(1)----------------->AG <-------- -->MYB46(3)                               >>>>>>>>>TBF1 --------->DAG2==============================   cccattttcccccaaaattgaacagagagaagaaggtagaaggaagaagaagaagaggaaaggttcaatgtattccaaaatgggtttagaagtgcttttt  4450900                                              <---------YAB1                                             --------->AHL20(1)                                             <---------ARR11(3)                                             <---------AHL20(1)                                             --------->ARR11(3)                             <---------------AGL15                             --------------->AGL15    <---------------AGL15   <-----------------AGL3    ==========================================MADS_MADS    --------------->AGL15   ----------------->AGL3   ===========================================MADS_MADS   ==========================================MADS_MADS   <-----------------AGL2   ========================================MADS_MADS   <-----------------AGL3   ----------------->AGL2   ----------------->AGL3   <-----------------AGL2                         ----------->GT1 --------->GLK1(2)          <-----------------AG    --------------->AGL15 --------->DAG2            < ============================================MADS_MADS              ---------->DOF2                 < =============================================MADS_MADS         ---------->DOF2                     < ===================================================================MADS_MADS                     <-- -DAG2<---------YAB1    <------------CBF----------->GT1   --------->HSFB2a(2)                 ------- --DOF2             ---------->DOF2  <---------AtLEC2     <---------HSFB2a(2)              <---------YAB1 =============================================MADS_MADS<---------YAB1   ---------->DOF2    --------->ICU4   gggaatctattaatgggaacacaaaagattgctaaatttggatggaatatttttgtttttatagaaaaaagaaagaaaggtaaaaactcggtaatgaatg  4451000                                                                       ----------------->AGL1       <---------ANAC58                                                ----------------->AG       <---------ANAC58                                                <-----------------AGL2   <-------GAMYB                    <-----------GT1                  <-----------GT1     <-----------HVH21  --------->ALFIN1              <----------DOF2                  <----------DOF2    <---------ARR14(2)  <-----------RAV1(1)     <---------ZAT18                    <-----------GT1        --------->ARR14(2) ---------ANAC58          --------->ZAT18               <---------AtLEC2----------->RAV1(1)         - ---------ANAC58        <---------ZAT18                 <---------ANAC58<---------------AGL15     --- ---------ANAC46       <---------ANAC58                 <---------ANAC58--------------->AGL15 ------- -------ANAC46         <---------ANAC58       <---------TOE1(3)  <---------DAG2     --------->ARR11(3) >TEIL <---------AtLEC2<---------ANAC46       <---------TOE2(3) <---------DAG2     <------ZmHOX2a(1)<   ttgtgtgttgcatggccactgttttgcgtgctctcttttttcaattttagggttttttgcatgatacctttttgccacatttggaggattttgtcagttc  4451100                <----------DOF2                <---------DAG2          <----------DOF2        <---------TOE1(2)       ------>ZmHOX2a(1)   <---------PCF2                                   <-----------GT1 -------->HSFB2a(2)                             <----------DOF2 -------->RAV1(2)         ---------->DOF2<----------DOF2     <----------DOF2 <---------YAB1 -->ARR14(2)   <---------DAG2         <-----------GT1<-----------GT1       --------->ATHB12       <-- ---------HSFB2a(2)      ------>ZmHOX2a(1)    ------>ZmHOX2a(1)           --------->AHL20(2) <-------   ttctgggtcctactttcccttttcttcctaaagttgtttttttctttcctcttttttccttccctttaaaattagatttattagtactagtgtattttct  4451200                                          <---------DDF1                                         --------->DREB2C(2)                                        --------->DEAR3(2)                                        -------->ZAP1                                      <---------WRKY18(1)                                     --------->WRKY12      --------->DAG2                                     --------->WRKY38(1)  ---------->DOF2                                   --------->YAB1    --------->AHL20(2)   <-----------RAV1(1)        ------>MYB83----------->RAV1(1)  <---------TOE2(3)           ------>MYB46(1)       --------->AHL20(2)      --------->YAB1       ---- --------DOF2                ----------->RAV1(1)  --------->YAB1        --------->ICU4    ----------- ----GT1                    --------->AtMYB61   --------->AHL20(2)    ----------->RAV1(1)---------->DOF2   ctttaatgttgttgtaagacataaatcagaccaacaatgttgaccgacataaaaataaaaaaaagttcagagcaacaattagaaacaatttcaaagtacc  4451300  Previous    Next  AGI:  At5g13790.1    Description:  AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor. Identical to Agamous-like MADS-box protein AGL15 (AGL15) [Arabidopsis Thaliana] (GB:Q38847;GB:Q38839); similar to AGL18 (AGAMOUS-LIKE 18), transcription factor [Arabidopsis thaliana] (TAIR:AT3G57390.1); similar to Agamous-like MADS-box protein AGL15 (GB:Q39295); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 4449017    to: 4450846    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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