Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                  <---------ARR14(2)                                                                               --------------->AGL15                                                                               <---------------AGL15                                                    <---------------AtSPL8    <-----------------AG <-   --------->ZAT14                                  <---------------AtSPL3    <-----------------AGL2   <---------ZAT14                         --------->ARR11(3)                 ----------------->AGL3   <---------ZAT18                        --------->REM1(1)                   <-----------------AGL3  <---------ZAT6                     <---------ZAT6---------->DOF2         <----------DOF2  <-------- ---->DOF2                 <---------YAB1<-------TEIL                --------->STY1(2)      <-------- -HSFB2a(2)    --------->TOE2(3)     <---------------AtSPL8          <---------At4g35610    --------- >HSFB2a(2)    <----------DOF2       --------------->AtSPL3      <----------DOF2  --------->ARR14(2)   agtagtgtagttttgaactttaatgaactattagtaatagtggtacatcttgttaaagtacttcaagctttagctagctttctgtatatgggtatatatt  4445000                                         <----------DOF2                                      ------>ZmHOX2a(2)             ---------->DOF2                                    <---------ARR11(3)          <---------ZAT6 --AHL20(2)                  ----------->RAV1(1)         --------->AHL20(2) ---------DOF2             --------->At4g35610           --------->AHL20(1) -ARR11(3)      --------->ATHB12    --------->ARR11(3)   <---------AHL20(2)                     <---- -AHL20(1)     <-------TEIL<---------At4g35610       <---------AHL20(2)                --------->GLK1(2) >ARR11(3)  --------->At4g35610    --------->ZAT14  --------->AHL20(2)            ---------->DOF2   tctttctcttacttagcttcattgagttcagcaacagtgatctctttctacttataaaattttttagtcttaaaggcccatcttgaaagaatttgaaact  4445100                                          <------------ATHB5                                          --------->ATHB12                                          --------->YAB1                                         <---------ATHB12                                         <<<<<<<<<ARR1                                         <---------YAB1                                           ---                                         <<<<<<<<<ARR2                                          <----          ------>ZmHOX2a(1)         --------->ANAC46                                            <----      --------->GLK1(2)  --------->ARR11(3)                                                   -------      <---------ARR14(2) <---------ARR11(3)                          ---------->DOF2      <---------YAB1 ------DOF2           <-----------GT1  --------->WOX13(1)          <---------YAB1       <-----------GT1   tttacaagaatcctatcagttttataacatcttactacaaacaatcataggcccatcagtttttcagttatcaaagcagagaggcccattttacaattat  4445200                                                                           ------->PIF5                                                                           <-------PIF5                                                                           <-------MYC2                                                                           <-------MYC3                                                                           ------->MYC3                                                                           ------->MYC2                                                                          --------->O2                                                                          --------->bZIP60(2)                                                                          --------->TGA1a                                                                          <---------O2                                                                          <---------TGA1a                                                                          --------->ANAC55(2)                                                                          --------->ANAC58                                                                          <---------ANAC55(2)                                                                          --------->ANAC58                                                                          --------->ANAC46             --------->GLK1(1)                                           ------>NtERF2    <-----------HVH21                                                   <------------OsbHLH66    <-----------TGA1                                                    <-------------DYT1   --------->ANAC58                                                     <---------ALFIN1   --------->ANAC46                                                   <-----------HVH21   --------->ANAC58                                                   ------>NtERF2 ------>ANAC46------>ZmHOX2a(2)                      <---------AtLEC2--------->ANAC58 -----YAB1  --------->ARR11(3)                <---------YAB1         --------->ANAC58 -------GT1 <---------ARR11(3)            --------->YAB1             --------->ANAC46 -->YAB1<---------At4g35610               --------->TOE2(3)         <---------LBD16         ---------   actaaacgtcatatgatctccattcttcagagaaacaagtccaatcttatcatttacatgaaatctaaaacccgccacgtgattcgtcgattacacagaa  4445300                                                                                <------NtERF2                                                                               <---------At4g35610                                                           <---------AtMYB61   --------->At4g35610                         <----------ID1                  --------->ALFIN1     <---------DEAR3(1)                       ---------->DOF2                  ------->MYC2          <---------ANAC46                      ------------------------>ANAC81   ------->MYC3         <------NtERF2                 <----------ID1                         <-------MYC3     <---------ANAC58                 ----------->GT1   --------->DAG2       <-------MYC2     <---------ANAC58                ------------------------>ANAC81       ------->TEIL   <---------AHL20(2)     ----------->RAV1(2) ----------->GT1  <------------CBF --------->ALFIN1--------->ALFIN1 >ANAC46       ---------->DOF2    ---------->DOF2<---------ANAC46   --------->AHL20(2)   cccatatacctgaagaaaaaagaaaaaaagaaaaaaaaaagcgaaattgttgtttgaacgtgtggtcgaattttatcgtggcgctgaattagcatccaca  4445400                                         ------>ZmHOX2a(1)                               ------>ZmHOX2a(2)                               =================HOX2a_HOX2a                              ==================HOX2a_HOX2a                              <---------GLK1(1)                              <------ZmHOX2a(2)                       <---------ANAC58                             <---------ARR11(3)             ------->MYC3                             --------->ARR11(3)         <-------TEIL  <---------ANAC58                            --------->GLK1(1)          --------->CCA1(2)                --------->MYB46(3)                            <---------GLK1(1)         --------->ARR14(2)             <--------P                          *TSS--------->GLK1(1)       <---------ARR14(2)      --------->WRKY18(1)                 ---------->DOF2         <-----------HVH21  <-------MYC3     <-----------HVH21    ---   agtgaagaaaacagagagagaaagacagagagatctctctctccttcacacacacagatacacatggccatcgcgagcgggtcatgggtagccactgtga  4445500                                    ------>MYB46(1)                                    ------>MYB83                                  --------->MYB46(3)                  --------->At4g35610                  <---------At4g35610                                                   --------->HSFB2a(2)                  --------->ZAT2  <---------MYB59                                       <---------HSFB2a(2)              --------->ANAC46 ------>NtERF2                                     <---------At4g35610              <---------ALFIN1--------->DEAR3(1)          ---------->DOF2        <---------ZAT2    --------->AtLEC2          <---------ETT(1) <----------DOF2               --------->ARR14(2) ------>MYB46(3)<---------ALFIN1  --------->AtMYB61<----------DOF2        <---------AtLEC2   accaccatgctaatccccacagcttcacttctccgaccaaacccattttctttctttctcaaaagcctcacaatttccatgtctgctcgtctcgatgctc  4445600                                                    ----------------->AGL3                                               <---------O2                                     ---------->DOF2----------------->AGL1                        <-----------HVH21      <---------TGA1a                  ---------->DOF2    ====================bZIP_DOF                       <-----------ARR10                  =======================================bZIP_DOF                     --------->LBD16             --------->At4g35610    ------>ZmHOX2a(1)                          --------->TOE2(3)          <------ZmHOX2a(1)<---------At5g28300 --------->O2     ----------->RAV1(2) <---------LBD16        <---------TOE2(3)----------->HVH21<----------ID1       ------->TEIL    --------->TOE1(3) ----   tatggttcttgaggaagatgaaaagaagtcaccgagtcctaaagaagacaagtggccattttttgaacctggtccgaatgaccttaaccgggtcttatcc  4445700                    <---------LBD16                <---------ARR14(2)                --------->ARR14(2)                <---------GLK1(2)              --------->LBD16                                                         <---------At4g35610             --------->ANAC58                   ---------->DOF2                       --------->At4g35610             --------->ANAC58                --------->HSFB2a(2)                     --------->GLK1(2)        ----------->HVH21                    <---------HSFB2a(2)                  ------>MYB46(1)       --------->HSFB2a(2)               --------->TOE1(2)                        --------->ANAC58<--       --------->LBD16                --------->GLK1(1)      <---------GLK1(1)    ------>MYB83    <--      --------->ANAC46           --------->At4g35610     <------ZmHOX2a(1)        --------->ANAC58<-- ----->LBD16<---------LBD16      <---------At4g35610   <---------TOE2(3)    --------->MYB46(3)   <---   aggtttctccgagacccggaaactcggaaactttcttctgaattctacgagaaagctaaggagaactctgagttgagaacgaccaagcatctgataagtt  4445800                                                 <---------LBD16                                                 <-----------RAV1(2)                                               ------>ZmHOX2a(2)                                              --------->GLK1(1)                                              <---------GLK1(1)                                              <------ZmHOX2a(2)                                             --------->ARR11(3)                                             <-----------ARR10                                             <---------AGP1 --------->DAG2                <----------                          <---------ANAC46   --------->GLK1(2)                    <-------MYC3      <      --------->GLK1(1)   <---------ANAC58   <---------ARR11(3)       ----------->HVH21   ------->TEIL -------ANAC46            <---------ANAC58   --------->ARR14(2)     ----------------->AGL1<---------ARR14(2) -------ANAC58        <---------ANAC58       <---------ARR14(2)     <---------ANAC58      --------->GLK1(2) -------ANAC58        <---------ANAC58      <------ZmHOX2a(1)       <---------ANAC58      --------->ARR14(2) --------------------TaNAC69(2)     <---------MYB52(1)     ---------->DOF2        ------->MYC3   <---   acttggtgagttccaagagttgggacttgcttgtttctgtttgtgaggatctcagggaacataaagcattgcctgatgggcaaacgtgttcgaatctgat  4445900  Previous    Next  AGI:  At5g13760.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04440.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40758.1); contains InterPro domain Protein of unknown function DUF580 (InterPro:IPR007603) Range:  from: 4442017    to: 4444938    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g13770.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G42310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46735.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4445426    to: 4447479    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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