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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--
-------
--------->
CCA1(2)
<------
<---------
ARR11(3)
--------->
At4g35610
=============
--------->
ARR11(3)
<---------
At4g35610
------>
ZmHOX2a(2)
---->
AGL15
---------->
DOF2
==============
-----
AGL15
--------->
ANAC58
<------
ZmHOX2a(2)
----->
AGL2
--------->
AtLEC2
<---------
ARR14(2)
------
AGL1
--------->
ANAC58
<---------
ARR11(3)
------
AGL2
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
ARR14(2)
----->
AGL3
<-------
TEIL
===============================
HOX2a_HOX2a
----->
AGL1
--------------->
AtSPL3
==============================
HOX2a_HOX2a
------
AGL3
---------->
DOF2
<---------
TOE2(3)
------->
TEIL
--------->
ARR11(3)
gggccatgagagatattggataagaaagaaatgatatac
cttgaggtacaagcaaagctgaacctcctctaaacgactcaaaaacccagatcgtgaagct
4430400
<------
NtERF2
--------->
ANAC58
------>
NtERF2
--------->
ZAT6
--------->
ANAC58
<------
ZmHOX2a(1)
------>
NtERF2
----------->
RAV1(1)
--------->
ANAC58
-------->
P
--------->
MYB46(3)
--------->
ANAC58
------>
MYB83
--------->
RAV1(1)
--------->
ANAC46
------>
MYB46(1)
-->
At4g35610
<----------
DOF2
<---------
MYB59
-
---
At4g35610
<---------
At4g35610
<-------
TEIL
<----------------
=============
HOX2a_HOX2a
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
HSFB2a(1)
<<<<<<<<<
TBF1
=============
HOX2a_HOX2a
<---------
At4g35610
<-----------
GT1
--------->
HSFB2a(1)
<<<<<<<<<
TBF1
ccaacaacaggaacactaattgtctctgcttctgcttctacgccagcattttcctcttcttcaggctccaaacgttcgtaacctactcttcttcttcttc
4430500
<---------
ALFIN1
--------->
AtMYB61
--------->
MYB46(3)
<---------
ANAC55(2)
--------->
LBD16
--------->
ANAC46
--------->
ANAC46
--------->
ANAC55(2)
<---------
At5g28300
<---------
TOE2(2)
-------->
P
--------->
MYB46(3)
--------->
ANAC58
<---------
TOE1(2)
--------->
At4g35610
<-----------
HVH21
<-----------
RAV1(2)
<---------
At4g35610
<---------
ZAT14
--
<----------
DOF2
<---------
CCA1(2)
<---------
LBD16
>>>>>>>>>>>>>>>>>
LFY
--------->
ANAC58
----->
ZmHOX2a(1)
<---------
GLK1(1)
--------->
YAB1
<-----------
GT1
--------->
ZAT14
<---
--------
ANAC81
--------->
GLK1(1)
<---------
ICU4
--------->
WOX13(1)
<---------
ZAT6
----
tcctcttccttctcttttctgactgaattccccatttctcaggtttgatcatcacggagctatcaaccactctatccactgtagtgtcaccgcaaaccag
4430600
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<----------
DOF2
<---------
WOX13(1)
<---------
RAP2.6(3)
<-------
GAMYB
<---------
SPL7
<------
ZmHOX2a(1)
<----
------------->
AtSPL3
---------->
DOF2
----------->
HVH21
<-----
------
ARR14(2)
--------->
YAB1
<---------
MYB46(3)
<------
ZmHOX2a(1)
----->
ARR14(2)
<---------
YAB1
<---------
AtMYB61
--------->
MYB52(1)
<-----------
RAV1(2)
agccgtactaagctttatagaaaatggggatgataaagaaggagatggttgacattggtgagtcgttctgagtaagggagagattgtagggacaggagga
4430700
<---------
ZAT6
<---------
ZAT14
<---------
At4g35610
<------
NtERF2
--------->
At4g35610
------>
NtERF2
<-----------
GT1
--------->
MYB52(2)
<------
NtERF2
<---------
GLK1(2)
<--------
P
--------->
ATERF1(1)
<---------
ALFIN1
<---------
ANAC46
<---------
ATERF1(1)
<-----------
ARR10
<---------
ARR11(3)
<---------
ANAC58
<---------
HSFB2a(1)
--------->
At4g35610
--------->
ARR11(3)
<---------
ANAC58
<---------
ARR14(2)
--------->
At4g35610
--------->
TOE2(3)
-----
ARR14(2)
<---------
MYB52(1)
<---------
DEAR3(1)
--------->
ZAT2
<---------
ALFIN1
--------------->
AGL15
-
ZmHOX2a(1)
<---------
LBD16
--------->
ARR14(2)
<---------
At4g35610
--------->
TOE1(3)
gacggacacatagttgcggtagctgtagtgggaatcgtcgtcgccat
ggatggatgagctgcagagcttcccacaccttagatttttctatttttgttat
4430800
--
--------->
YAB1
--
--------->
ARR11(3)
<---------
CCA1(2)
---
<---------
AHL20(2)
<---------
ANAC58
---
--------->
YAB1
<---------
ARR11(3)
<---------
ANAC58
---
--------->
AHL20(2)
*
TSS
--------->
ANAC55(2)
<---
<---------
ATHB12
----------->
GT1
<---------
ANAC55(2)
<-------
<----------
DOF2
>>>>>>>>>
TBF1
<---------
ZAT6
<---------
YAB1
<-----------
HVH21
ctatcttctttttggtccaataaaaatggaagaagaagat
aattctctcttgtgttacttacttatatcatagagcctctctctgtgtcatatcagttat
4430900
<---------
ANAC58
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
ANAC58
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
=============================================================
MADS_MADS
<---------
AHL20(2)
--------------->
AGL15
--------->
GLK1(2)
------->
LBD16
<----------
DOF2
--------->
ARR11(3)
---------->
CBF
<----------
DOF2
--------->
CCA1(1)
------>
ANAC58
<---------
ANAC58
--------->
RVE1(1)
<-----------------
AG
------>
ANAC58
<---------
ANAC58
--------->
AHL20(2)
----------->
RAV1(1)
------>
ANAC46
--------->
ALFIN1
<xxxxxxxxxxxxxxxx
smallRNA(i)
------
LBD16
<---------
ANAC46
--------->
AHL20(2)
--------->
ANAC58
--------->
DAG2
--
MYB52(1)
<---------
ANAC58
<---------
AHL20(2)
<----------
DOF2
---------->
DOF2
ccgcaattaaatttgggtggagttgctttctttttttgtaattaaaaaaaaaaaaaaatcttttcgatatgcaacaattttggaaaaggaaaccaaaaat
4431000
--------->
AtLEC2
<---------
YAB1
--------->
YAB1
-------->
HAHB4
-------->
ATHB1
<--------
HAHB4
<---------
ICU4
<---------
AHL20(2)
--------->
ATHB51
<---------
ATHB51
<---------
YAB1
--------->
ICU4
<---------
At4g35610
<---------
YAB1
<---------
At5g28300
<---------
ZAT14
---------->
DOF2
<---------
MYB52(1)
<
<-----------
GT1
<---------
LBD16
<-----------
GT1
--------->
TOE2(3)
<-
gagaaattacagcttataaatgttttcggattgcagtatatacaaacccaaagctccatagttttcggacccttaattattaatgcaaacccaaaattcg
4431100
<---------
AHL20(2)
<---------
ZAT14
--------->
AHL20(2)
--------->
ZAT14
--------->
YAB1
<-----------
HVH21
----------------->
AGL3
--------->
TGA2(1)
--------->
PCF2
<---------
AHL20(2)
<---------
bZIP60(1)
<---------
ARR14(2)
<---------
AHL20(1)
--------->
bZIP60(1)
--------
---------
MYB46(3)
<---------
ATHB12
<---------
AHL20(2)
----------->
HVH21
--------->
ARR11(3)
--------
AtMYB61
---------->
DOF2
------>
ZmHOX2a(1)
<---------
TGA2(1)
----------->
HVH21
agtggtttcggacccataaaaaggcccaataaaattggattcctagtaaattgacgcatatgatgtcacatgtacagtgatggctgaacgagagataatg
4431200
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
<-------
MYC4
------->
MYC4
------->
PIF5
------->
MYC2
<-------
MYC2
<-------
PIF5
------->
MYC3
------->
PIF4
<-------
PIF4
<-------
MYC3
==============================
MYC_MYB
================
bZIP_DOF
<---------
TGA1a
--------->
TGA1a
<---------
O2
================
bZIP_DOF
<---------
ALFIN1
<------------
OsbHLH66
--------->
SPL7
<-----------------
PIF3(1)
------->
TEIL
-
--------->
ANAC46
<---------
CCA1(2)
<
--------->
PCF2
------->
GAMYB
<---------
ANAC46
<---------
ARR14(2)
<---------
HSFB2a(2)
<---------
PCF2
<---------
ANAC58
--------->
ANAC58
======
<-----------
HVH21
--------->
O2
<---------
MYB46(3)
<---------
ANAC58
--------->
ANAC58
------
->
MYB52(1)
--------->
HSFB2a(2)
--------->
ALFIN1
---------->
DOF2
<---------
REM1(2)
--------->
ARR14(2)
gaccaagtgtcacggtctagaccccacgtgcttgagggtgggagcaacgcgctgttccaaagcttgtctgtggtgaacacgcgtacctctctgaatcctc
4431300
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AGI:
At5g13730.1
Description:
SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40772.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma-70; (InterPro:IPR014284); contains InterPro domain RNA polymeras
Range:
from: 4429113
to: 4430840
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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