Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ZAT18       <---------------AGL15      ----------------->AG      --------->TOE2(3)      <-----------------AGL1      --------------->AGL15                                                                  --------      <---------------AGL15                                                                  <-------      ----------------->AGL1                                                     <---------AHL20(1)     <-----------------AGL3                       --------->ANAC46               --------->AHL20(1) <     <-----------------AG                --------->ANAC46                        <---------ARR11(3) -     <-----------------AGL1            --------->ANAC58                          --------->ARR11(3)<-     ----------------->AGL2            --------->ANAC46                       --------->YAB1 <-------     <-----------------AGL2            --------->ANAC58               ---------->DOF2   <---------MYB59 ---------->TaMYB80                  <---------ALFIN1     <----------ID1   ----------->RAV1(1)<------   gcgactatccctaattgggacactctctaactcacatccacacacaaaacacaaaccatagggacaaatccatacagcaacaatattttgcctaattttt  4340900                                                                                             ========                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------          <----------DOF2                   ----------->GT1                                  <------- ->AHL20(2)                                --------->ICU4                       --------->ATHB51 --AHL20(1)                          --------------->AGL15                      --------->ATHB12 -----------GT1                      <---------------AGL15                      --------->AHL20(2) --------->ID1                      <---------ANAC58                           <---------AHL20(2) <-- ----------GT1                      <---------ANAC58                <---------AHL20(2)       -------- --AHL20(2)                         <---------ANAC46     ------->TEIL   <-----------GT1 ----------->HVH21 ---AHL20(2)                  <---------MYB52(1)   --------->ICU4----------->GT1<---------AHL20(2)---   ttttccttctccctttacttcccttcttgtctgttttttcttgtaatggttaaattatgaacttgagtagtaaattacaaaattatttgtttgacacgag  4341000    --------->ARR11(3)    <---------ARR11(3) ================================bZIP_DOF ->TGA1a                  --------->AHL20(2) ->ANAC58             ---------->DOF2--------->AHL20(1)                              --------->GLK1(1) --TGA1a           --------->LBD16   <---------AHL20(2)                              <---------GLK1(1) ->ANAC58          --------->HSFB2a(2)             <---------AHL20(2)        <---------ANAC46 ->ANAC46          <---------HSFB2a(2)<---------YAB1                         <---------ANAC58 --O2        <---------ICU4         --------->ATHB51                         <---------ANAC58 -------O2--------->YAB1----------->GT1         ----------->GT1       <---------ATHB12 ->O2     --------->TOE2(3)         <---------AHL20(2)  --------->ATHB12 <---------ANAC58 ------>O2--------->HSFB2a(2)       --------->AHL20(2) <---------AHL20(2)<---------ANAC58    --------   acgagacatcttccataattccgagaaagaaaatagaattattttgggtctagttatttgattagtttaccaatggattgcgttcagaattcagaagcag  4341100                                                                                 <---------------AGL15                                                                                 --------------->AGL15                                                                                ----------------->AGL1                                                                         --------->AHL20(2)                                                       <----------DOF2   --------->AHL20(1)                                                  <-----------GT1        <---------AHL20(1)       <--                                           --------->LBD16               <---------AHL20(2)       ---                                          <---------ANAC58          --------->AHL20(2)         ------                                          <---------ANAC46       --------->TOE2(3)     <---------TOE2(3)   ---------->DOF2 --------->AHL20(2)     <---------ANAC58    <-----------GT1 <-----------GT1 ------- ->At4g35610   ----------->GT1       <---------ICU4    <---------DAG2   --------->AHL20(2)>>>>>>>>>>GT-3b   agactaaaagacacaatgcgttaaattagacggagttactaattccgtctattaaccctttttttatccataaattttattttccatttaagaaaaataa  4341200          <---------ANAC46          <---------ANAC58          <---------ANAC58      <------------CBF    <---------AHL20(2)                                           *TSS   <---------AHL20(2)                                     --------->ZAT2   --------->AHL20(2)                                     --------->At4g35610   --------->AHL20(1)                                     <---------ZAT2   <---------AHL20(1)       <---------MYB46(3)        <---------ALFIN1 -------AHL20(2)         <-----------RAV1(1)          --------->ANAC46                    --------->AHL20(2) ------>AHL20(2)     <---------ARR14(2)              <---------REM1(2)          --------->At4g35610 --->AHL20(2)        <------------CBF               <---------ALFIN1            ----------->RAV1(2) -->AHL20(2)        <------ZmHOX2a(1)             ------>ZmHOX2a(1)       ------>ZmHOX2a(1)         -   aaaaataaaattgcttagtggaggattgtgttgttgttcatctatcttcttcctccacacagctagaaacagtctcctcatcttctgagcaaaaaaatgg  4341300                                                  --------->GLK1(2)                                                  <---------ARR11(1)                                                  --------->ARR14(2)                                                  ------->TEIL                                                  <-----------ARR10           --------->ARR14(2)                                                  <---------ARR14(2)          <---------GLK1(1)                             ---------->ID1      <---------CCA1(2)    --------->ARR14(2)           --                         <---------ANAC58  <---------At4g35610   --------->ANAC58               <----                         <---------ANAC58  --------->At4g35610   --------->ANAC58              ------              ------>ZmHOX2a(1)   ------>ZmHOX2a(1)              --------->ANAC46         <---------At5g28300       <------------------------ANAC81 <-----------HVH21       <---------ALFIN1          <-----------GT1 -------->ALFIN1  <------------------------ANAC81<---------ARR14(1)--------->ANAC46--------->LBD16---   aagtggctcttctctccttctcttcttccttgtctcctctctgtcaccagcgaatctcaactctcacacccaaaacctcgaattccccaaattaccctcg  4341400                         ----------->GT1                         <---------ANAC55(2)                                                <------NtERF2                         --------->ANAC55(2)                                              --------->RAP2.3(2)              <---------LBD16                                                             --------->ATERF1(2)              ------>ZmHOX2a(2)                                                           --------->RRTF1(3)             --------->CCA1(2)                                                            --------->RRTF1(2)             <------ZmHOX2a(2)                                                            --------->DREB2C(2)             --------->ARR14(1)                                                           --------->RAP2.3(3)            --------->AGP1                                                                --------->ANAC46            <---------GLK1(2)                                                             --------->RAP2.6(2)            --------->ARR14(2)                                                            <---------ATERF1(2)          ----------->ARR10                                                               --------->DEAR3(1)        <---------At4g35610                                                              --------->RAP2.3(1)    <-----------HVH21  <---------ANAC46                                                 <---------ATERF1(1)   --------->LBD16  --------->ALFIN1                    <------NtERF2                  --------->ANAC46  --------->LBD16<---------DEAR3(1)                     <---------MYB52(1)             <---------DEAR3(1) ---->NtERF2<---------ARR14(2)                         <---------RAP2.6(3)            ------>ZmHOX2a(1) -----ATERF1(1) --------->LBD16                        <-----------HVH21 --------->ARR14(2)<---------ATERF1(1) --->ANAC46--------->At4g35610                        --------->RAP2.6(2)<---------ARR14(2)------>NtERF2 ------>DEAR3(1)<---------LBD16               <-----------HVH21       --------->HSFB2a(2)--------->ERF1   cctcccggtcatcagatccgcggtgtctcgtaacaagaaggaagagactgtcgaagccgtcaagtctcacttggagaactgccatctcctcgccgccatc  4341500                   --------->ANAC58                   --------->ANAC58                        ---------->DOF2                 ---------->DOF2                   ----------->RAV1(1)                --------->WRKY18(1)                <---------ALFIN1                <---------MYB52(1)                 ------>NtERF2               <-----------HVH21   <---------LBD16--------->ANAC46              --------->DEAR3(1) --------->AtMYB61--------->LBD16                              ------           <---------ALFIN1    --------->ARR14(3) ----------->HVH21                            ------          <------NtERF2        <---------ARR11(3) <---------ETT(1)                 <----------DOF2          ----------->HVH21    --------->ARR11(3)--------->LBD16         <------NtERF2         ------   ---------->DOF2--------->WOX13(1) --------->LBD16 --------->ZAT6     ------>NtERF2        --------   aactacaaaggcctcaccgtcaagcagtttcaagacctccggagaactctccccgacactacaaagctcatcgtcgccaagaacactttggtcttcaaag  4341600                    --------->At4g35610          --------->MYB46(3)                                     --------->HSFB2a(2)         <------NtERF2                                           <---------HSFB2a(2)         --------->ANAC58                                    <---------ANAC58                       <         --------->ANAC58                                <----------DOF2                           -- --->ANAC58         <---------At4g35610                  <---------DAG2                            -- --->ANAC58 ------>MYB83              ---------->DOF2   <---------ANAC58    <---------GLK1(1)      -- --->ANAC46 ------>MYB46(1)--------->ANAC58             <---------ANAC58    --------->GLK1(1)      -- -->DOF2----------->RAV1(1)--------->ANAC58     ------->TEIL <---------ANAC58         <---------At4g35610   ccattgaaggcaccaaatgggaagctctcaagccttgtatgaaaggcatgaacgcttggcttttcgtccagaccgatgaaatcccttctgctatcaaacc  4341700                                                  <------NtERF2                                                  --------->ATERF1(1)                                                 ------>NtERF2                                                 --------->ABI4(2)                                                 <---------At4g35610                                                 --------->At4g35610                                                <---------DEAR3(1)                                               --------->RAP2.3(1)                                               --------->ATERF1(1)          <---------HSFB2a(2)                  <------NtERF2          <---------HSFC1(1)                  ------>NtERF2          --------->HSFC1(1)                  <---------ERF1     <---------HSFB2a(1)                      <---------RAP2.3(1)     --------->HSFC1(2)                       --------->LBD16     <---------At4g35610                      <---------ORA47(2)     --------->HSFB2a(1)                      <---------ATERF1(1)     --------->ZAT2                           <---------RRTF1(1)     <---------HSFC1(2)                      <---------DEAR3(1)     --------->At4g35610                     --------->ATERF1(2)     <---------ZAT2                          <---------ATERF1(2)    --------->ARR14(2)                       <---------RRTF1(2)    <---------ARR14(2)                       <---------DREB2C(2)                <<<<<<<GRF7  --------->LBD16                            <---------RAP2.3(3)            ----------->RAV1(2) ---------LBD16        --------->ANAC58      <---------RRTF1(3)             --------->At4g35610 ---->MYB46(1)         --------->ANAC58      <---------RAP2.3(2)        --------->ANAC46---------->DOF2 ------>P --------->HSFB2a(2)                --------->DEAR3(1)<--------P   <---------At4g35610 ------->MYB52(1)  --------->ANAC58         <---------LBD16 <---------TOE1(2) ----------->HVH21  ---- ---->MYB83        --------->ANAC58     <----------DOF2     <---------TOE2(2) ------>ZmHOX2a(1)------   ctaccggagcttccagaaggaacgcaagcttgaaaacaatgactttgccggcgctgtcttcgaaggtaagttctacgctcctgacaatttcaaagtcctc  4341800  Previous    Next  AGI:  At5g13500.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25265.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42819.1) Range:  from: 4338158    to: 4341006    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g13510.1    Description:  ribosomal protein L10 family protein. Identical to 50S ribosomal protein L10, chloroplast precursor (RPL10) [Arabidopsis Thaliana] (GB:Q9FY50); similar to ribosomal protein L10 family protein [Arabidopsis thaliana] (TAIR:AT3G12370.1); similar to 50S ribosomal protein L10, chloroplast precursor (CL10) (GB:O80362); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) Range:  from: 4341265    to: 4342098    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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