Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <----------TaMYB80     --------->HSFB2a(1)     <---------GLK1(1)     --------->GLK1(1)                  <------ZmHOX2a(1)    --------->ARR14(2)               --------->HSFB2a(2)    <---------GLK1(2)                <-----------RAV1(2)    <-----------ARR10                <---------LBD16    <---------ARR14(2)               <---------HSFB2a(2)                         --------->ALFIN1  --------->LBD16              <---------ANAC58   --------->ZAT2        --------->DAG2 ---------LBD16                <---------ANAC58--------->At4g35610      <---------TOE2(3) ---------GT1 --------->YAB1   <-------GAMYB   <---------At4g35610    ---------->DOF2       ---------   taaccggattttcccagcataagagagaaacttggttgtccaggagttaagctgctcggtaatcttttgaataaaaggttgaagtgtggcaagagaaagc  4334300                        --------->CCA1(2)                       --------->ARR14(2)                                             --------->GLK1(2)                       --------->ARR11(3)                                             <---------ARR14(2)                     --------->ANAC58                                         <---------At4g35610                --------->ANAC58                                           --------->At4g35610                --------->ANAC58                                  --------->At4g35610 --------->ARR14(2)             <------NtERF2       ----------->GT1             --------->ANAC58 --------->At4g35610          <---------At4g35610    <----------ID1              --------->ANAC58 --------->ZAT2  <------          --------->At4g35610   ----------->GT1           <---------ATHB12 <---------At4g35610-------        ---------->CDC5<---------ARR14(2)               --------->WOX13(1)------->GAMYB    --------->ANAC46      <-----------HVH21<---------ARR11(3)          --------->ARR14(2)  --------->YAB1<---------GLK1(2) ->DOF2<-------TEIL  --------->ANAC58              <---------ARR14(2)  --------->MYB52(1) --------->LBD16   ttagtcgggttcagcggcaagccaagataccgagagggaaaaacacctattcgaatcccaatcaagtcagcaataacagcagcttcagaatccccataac  4334400         <---------At4g35610                                                                      <--         --------->ZAT2                     --------->DAG2                                <---------ZAT14         --------->At4g35610               ---------->DOF2                    --------->TOE1(2)   ---   ---------->DOF2                    <---------LBD16                --------->ZAT6       --------->At4g35610 ---ARR14(2)               <-------TEIL --------->LBD16          <---------ZAT14          <---------At4g35610 -->ARR14(2)     <----------DOF2 ----------------->AGL1          --------->ZAT14         --------->ALFIN1   ctccaaaaaacagctcagactttgaagggttcatgtccaaaccggaaaaggaatggaaagtttgcagtataccactaataccaaggagagagtgctgaga  4334500                              --------->ANAC58                                                 <-----                              --------->ANAC58                                                <------                      ----------->RAV1(2)                                                     <------               --------->AHL20(2)                                                             -------               <---------ATHB12                                  <------ZmHOX2a(1)            -------          >>>>>>>>>MYB2     ---------->DOF2                    <---------TOE2(3)            --------- --------->At4g35610  --------->At4g35610            <---------ZAT6                        ------->GAMYB ----------->RAV1(2)  <---------At4g35610          ----------->GT1    <---------At4g35610 --------->MYB46(3) -------HSFC1(2)<---------AHL20(2)                <------ZmHOX2a(1)   --------->At4g35610 <---------MYB55(2) ------>HSFC1(2)--------->AHL20(2)         --------->MYB46(2)---------->DOF2            ----------->RAV1(1)   accatctgagaaaaccaataaatcatctgcgaaagctagatgagttaggcgaggagtgatacacaaaggatgagcagaaaacttgccctccaacagccca  4334600       --------->GLK1(2)   ----------->RAV1(1) ----ALFIN1                                                                    <---------MYB52(1) ---ZAT14                                            <-------TEIL             <----------DOF2    <--- ---ZAT18                                 --------->CCA1(2)                 ----------------->AGL1 -->ZAT14 <---------HSFB2a(2)           --------->CCA1(2)         --------->TOE2(3)            ------ -->ZAT18 --------->HSFB2a(2)      ---------->DOF2  --------->CCA1(2)   <---------ICU4 --------->ICU4 >At4g35610                  <---------MYB59  <------ZmHOX2a(1)   --------->TOE1(3)   *TSS   ------->TEIL   ctgtccaacattctggataacacctccattaccaaaataaagagataaggagagatacaatcaccttgccttaaacatgcctttatgtgaagatgaacat  4334700                                                                                        ---------->DOF2                                                                                        =============                                                                                       ==============            ------->TEIL                                                               ------->GAMYB       ------>ZmHOX2a(2)                                                     ---------->DOF2     <---------ARR11(3)                                    --------->ZAT2   <---------REM1(1)     --------->ARR11(3)                    --------->ICU4  --------->At4g35610        --------->MYB46(3)  <---------WOX13(1)               <---------MYB52(1)      <---------At4g35610       --------->ANAC58 ---------CBF  <----------DOF2    <----------DOF2 --------->MYB46(3)        --------->ALFIN1--------- --->ARR11(3) <---------DAG2    ----------------->AGL1--------->YAB1---------->DOF2  --------->ANAC58   attgactgatcttgcacctttccattttcaacatgcctttatgtgaagatgaacaaacatgagctgaaaacaaagaaggtgaagcacaaccaaagtgaca  4334800                          --------->ALFIN1                         --------->TOE1(2)                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                        --------->O2                        --------->TGA1a                        <---------bZIP60(2)                                                         -                        <---------O2                                                                -                 --------->CCA1(2)    --------->ARR11(3)                                  --------->ANAC58     <----------DOF2    <---------TGA1a             --------->ANAC58                      --------->ANAC58     =============================bZIP_DOF          --------->ANAC58                      --------->ANAC46 =================================bZIP_DOF        <---------WRKY38(1)             <---------At4g35610 =================================MYC_MYB        --------->WRKY18(1)              --------->At4g35610 -->HVH21      <---------STY1(2)      <---------ARR11(3)    <-------TEIL          <------NtERF2     -   tagcatactttagagctagatagaagacgtgggatttagagctcttcaagagtcaaggcaaatacatttggactgggatgaggcagcatcacaagccttc  4334900                                                                            <------ZmHOX2a(2)  <---------ICU4                                                           --------->ARR14(2)  --------->YAB1                                                           <---------ARR14(2) <---------ATHB12                                                    ---------->DOF2 --------->MYB46(3)                                        <---------At4g35610                      - ------->P                                  --------->TOE2(2)       --------->YAB1                --- ----->MYB46(1)                             --------->TOE1(2)      <---------YAB1               <---- ----->MYB83                  --------->GLK1(2)----------->HVH21<---------YAB1          <------------   ccaaccattactgaatcacttcgacattcgaaattctgactcaaaacatatgacaccctgaagatgaccattatagcgatccactaaaattttgtacaac  4335000                       <---------ANAC55(2)             <---------DEAR3(1)            <------ZmHOX2a(1)            --------->ATERF1(1)         <------ZmHOX2a(1)   <------NtERF2       --------->ANAC55(2)  ------>NtERF2--------->ATERF1(1) --------->ZAT14  --------->MYB52(1)   --------->ANAC58 --------->DEAR3(1)    ----------->GT1 ----------->HVH21     --------->ANAC58 -------->DEAR3(2)  <------ZmHOX2a(1)                     <----------DOF2  <---------HSFB2a(2)      - ------>MYB52(1)<---------ANAC46   <---------ZAT14     ---------->ID1      --------->HSFB2a(2)      - -----MYB52(2) <------NtERF2       --------->ZAT18    <------------------------ANAC81        -------- ---AtSPL8--------->ALFIN1  --------->ZAT6      <------------------------ANAC81        <---------AHL20(2)   tagccgacggaggaggaggcgaggaacgtaacactggtggactgatattgtgtttttgttcttttttttttttttttccaaaacaccatttttttttgta  4335100                                         <---------WRKY18(1)                                   ------                                         >>>>>>>>>>WRKY18                                      ------                                         >>>>>>>>>>WRKY40                                    <-------                                         >>>>>>>>>>WRKY62                                    <-------GAMYB        <------MYB83                    --------->WRKY45                                     --------      <---------MYB52(1)       ---------->DOF2                                          <---------ETT(2)    <-----------RAV1(1)   --------->ICU4--------->WRKY12                                --------->ETT(2) -------->ARR11(3)       <---------TOE2(3)                                            --------->ZAT14 -------->AHL20(1)    <---------YAB1  <----------DOF2                                 --------->REM1(2) --->GT1<------MYB46(1) ---------->DOF2 --------->WRKY38(1)                    --------->DOF5.7(2)   aatatactgttggtcaaaacaaatattaaagattaaagcactttgaccaaaacaaaatataaactaagaaatatttgaaacgttaccctgtagacagttg  4335200  Previous    Next  AGI:  At5g13485.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 6.7e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 4332950    to: 4334686    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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