Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->LBD16                                                        <---------LBD16                                                 --------->MYB52(2)                                                 <---------MYB46(3)                                               <---------MYB52(1)       <-------TEIL               --                                              <-------MYC3             --------->CCA1(2)          ---                                              ------->MYC3            <---------ARR14(2)         <---                                             --------->O2     --------->ATHB12              -------->ATHB1                                             <---------O2     <---------ICU4                ---------                                             --------->TGA1a <---------YAB1                 <--------                ---------->DOF2              <---------TGA1a <------ZmHOX2a(2)             <---------ATHB12                =======================================bZIP_DOF       --------->ARR14(2) --------->WOX13(1)             --------->REM1(1)          ----------->HVH21--------->ANAC58             --------->TOE2(3)            <-------TEIL              --------->At4g35610--------->ANAC46          <---------GLK1(1)         ----------->GT1              <---------At4g35610--------->ANAC58      <---------HSFB2a(2)<--   atgtagccaaatggtacatcaagctcatggaattcaaatcagatgacacgtttgttcccacggatcattgcagatacaatactagaaatctcaatcattc  4307100                            <----------DOF2             <---------------AGL15     --------->YAB1      <---------ARR11(3)                         --------->MYB52(1) ------->LBD16           --------->ARR11(3)                        <---------ALFIN1 ------>LBD16------->GAMYB <---------DAG2      --------->AHL20(2) <---------MYB55(2) ------LBD16 --------------->AGL15            <---------ATHB12    --------->MYB46(3) >YAB1      ----------------->AGL3          --------->WOX13(1)    <---------ABI4(2) -ICU4      --------->MYB46(3)            <---------ATHB12    <---------MYB52(2) -------ANAC46    ---------->DOF2       --------->WOX13(1)  ---------->DOF2 ----------->GT1   ccgtgaatcatacaaccaaaaaaagaagaccttttcaaaaatcaatcaatcaaataaaactgcaaagaaccaccgaaaatgaaaaatcaatgtagagaga  4307200                                                                                                    -                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                           <---------ZAT14                     <-----                                                           --------->ZAT14                     ------                                                        --------->At4g35610                    ------                                                        --------->CCA1(2)                      ------                                                        <------ZmHOX2a(2)                <------ZmHOX2a(1)                                                       --------->ARR11(3)       <---------At4g35610--                                                       --------->AGP1           --------->ZAT2 ------                                                       <---------ARR14(2)       --------->At4g35610<-                                                       --------->ARR14(2)  --------->HSFB2a(2) ------                                                       --------->ARR14(3)  <---------HSFB2a(2)<------                                                       <---------ARR11(3) ======================HOX2a_HOX2a                                                      <---------GLK1(1)  =======================HOX2a_HOX2a                                               <---------At4g35610       <------ZmHOX2a(2)    <------                                          <---------MYB46(3)            <---------ARR14(2)   --------                                         --------->ALFIN1  --------->At4g35610  <---------ZAT2<------           <---------YAB1       --------->DAG2 --------->At4g35610      --------->ARR14(2)   <-------      ----------->GT1           <---------TOE2(3)     --------->GLK1(1) --------->ARR11(3)  ---------  ---------->DOF2           --------->YAB1----------->GT1------>ZmHOX2a(2)------>ZmHOX2a(2)<---------ATERF1(1)   gagggaaagggttataaatcggcaaacctctgataaggctacggtggtaagatgagagatctgcagaggggagggatctgggagctgaagaggagtcgcc  4307300        ---------->DOF2  --------->AtMYB61 --------->MYB46(3) ----->NtERF2 ------>ERF1 ------>ATERF1(1) ----NtERF2 ----->ABI4(1) -->NtERF2 ------ATERF1(1) ---->DEAR3(1) ---->ANAC46 -----ATERF1(2) ---->RAP2.3(3) ---->DREB2C(2) ---->RRTF1(3) ---->RRTF1(2) ---->ATERF1(2)                                                   ----------->GT1 ---->RAP2.6(2)                                               ----------->HVH21 ---->RAP2.3(2)                                        ================================HOX2a_HOX2a --->ATERF1(1)                                         ------>ZmHOX2a(2) -NtERF2========================bZIP_DOF              =================================HOX2a_HOX2a --->RRTF1(1)                                         --------->GLK1(1) --->ERF1                    <----------ID1           <---------GLK1(1) --->DEAR4(2)               --------->ATERF1(1)      --------->ARR11(3) ------->DEAR3(1)          <---------ATERF1(1)       <---------AGP1 --->ORA47(2)         <---------ANAC55(2)            <-----------ARR10                             <- --------ALFIN1       --------->ANAC55(2)            --------->ARR14(3)                    --------->ANAC46 --->RAP2.3(1)        --------->O2                   <---------ARR14(3)                    --------->ANAC58 ---RAP2.3(1)         <---------ANAC46               <---------ARR14(2)                    --------->ANAC58 ---ORA47(2)          <---------TGA1a                <---------ARR11(3)                  <---------ALFIN1 ->DEAR3(1)           <---------O2                   --------->ARR14(2)         ------>ZmHOX2a(1) <-- ---ATERF1(1)         --------->TGA1a=========================HOX2a_HOX2a      <---------ALFIN1<----- --DEAR3(1)          <---------LBD16 ========================HOX2a_HOX2a     <---------ATERF1(1)<---- >ATERF1(1)       <-----------HVH21  <------ZmHOX2a(1)<------ZmHOX2a(2)---------->DOF2  <---------REM1(2)   gccaccatcggaaagggtatggtcacgggagacgacgaaggaggtcgcagtcgaagatctctgcgagacagagaaaagcctcctccctgctacacgcagc  4307400                                                                     --------->At4g35610                                                                 <---------SPL7     <---------At4g35610                             <-----------RAV1(2)     <---------ZAT2                                 ------>ZmHOX2a(1)<---------At4g35610     --------->At4g35610                        --------->ARR14(2)  <---------MYB46(3)     --------->ZAT2                            --------->GLK1(1)<---------DEAR3(1) ----------ARR10                               <---------GLK1(1)<---------RAP2.6(2) -------CCA1(2)  --------->GLK1(2)        ----------->GT1      --------->SPL7 ----At4g35610   <---------ARR14(2)--------->At4g35610         --------->RAP2.6(3)  --------->TOE2(2) -----GLK1(2)    ------->TEIL      <---------At4g35610   --------->ALFIN1           --------->TOE1(2)   atctctcagctcaaatgtgaatctagggtttcgctctagctgaacagagaaatcctcaggtttgggacggccgatgcaaaacaaaacataagagactact  4307500                                                                       <---------ANAC55(2)                                                                       <---------ANAC58          <---                                                                       --------->ANAC55(2)   <-------                                                                       <---------ANAC58      --------                                                                     <-----------GT1         --------                                   ------------>CBF             --------->ANAC55(2)         <------ZmHOX2a(1)                                --------->DAG2                  <---------ANAC58    <-----------GT1                              ---------->DOF2                   <---------ANAC58--------->AHL20(2)                 <------------CBF----------->GT1---------->ID1  <---------ANAC46<---------AHL20(2)                *TSS   <----------DOF2    <------------------------ANAC81  <---------ARR11(3)<-------   tactagtaagtcccttaaaaattgtctttgagaaaaggtcaatttgttttgttttttttggtttttgcgtattacttgatatttttttacttcaggattt  4307600                                  <---------ARR11(3)                                  --------->ARR11(3)                                        <--------                               <---------AHL20(2)                                           <--------                           --------->AHL20(2)                   <---------ANAC58            ---------   <---------ANAC58        <---------AHL20(2)                   <---------ANAC46         --------->AHL20(1)   <---------ANAC58    <---------AHL20(2)                 <---------AHL20(2)            <---------AHL20(2)   <---------ANAC46    --------->AHL20(2)                <---------AHL20(2)             --------->AHL20(2) ------YAB1            <---------YAB1                    <---------AHL20(1)            <---------AHL20(1) --ARR11(3)           <---------AHL20(2)                 --------->AHL20(2)            --------->AHL20(2) ->ARR11(3)           --------->AHL20(2)      <-----------GT1   <---------ANAC58       <---------AHL20(2) ->ARR14(2)          --------->YAB1  <----------DOF2 <---------AHL20(2)             --------->AHL20(2) --ARR14(2)   <-----------GT1  --------->AHL20(2)   --------->AHL20(2)           ----------->GT1   tgatggcatggttttttttctaattttaattaataaaatcttttggttttacgatataatttttttgtgtgtgtgtatttgtaagataaattattttatt  4307700                           --------->YAB1                          <---------YAB1                        <---------ICU4                        --------->YAB1                     <---------ICU4        --------->YAB1 <---------YAB1                  --------->ARR11(3)            --------->GLK1(1)        ----------->GT1--------->ICU4                  <---------ARR11(3)            <---------GLK1(1)   <---------AHL20(2)--------->YAB1                    <---------AHL20(1)           <---------ARR11(3)  --------->YAB1  --------->YAB1                    <------ZmHOX2a(1)         <-----------GT1 -AHL20(2)       <---------AHL20(2)               <---------TOE2(3)     ----------->GT1        ------ -AHL20(1)      --------->AHL20(2)    <---------------AGL15  <-----------RAV1(1)    --------->ARR11(3) >AHL20(2)   --------->ICU4-------->HAHB4       ---------->DOF2         --------->ICU4    -----------   tgtataaaaatcgtaatttttaataataataatagggggtctatacttggtaaaggatatattttgttgttgtaatgtttaaacaagatttccaacaaaa  4307800                               <---------HSFB2a(2)                                           --------                               --------->HSFB2a(2)                                           --------                 --------->ZAT18                                                             --------      <-----------GT1<----------DOF2              <------ZmHOX2a(1)                   --------->YAB1 ---->DOF2       <---------ZAT14         --------->ARR11(3)---------->DOF2          --------->GLK1(2) >RAV1(1)        <---------ZAT18     ---------->DOF2     <---------YAB1 <---------------------WRI1   agactgttttacatctgtgtgaacttttcaatactagaagaaagagctagaaggacatcatcaaagaagtagtcatcgatgaaaacaatctgaacaagaa  4307900                      --------->GLK1(2)                     <---------GLK1(2)              --------->MYB46(3)          <------ZmHOX2a(2)          --------->CCA1(2)         <---------ARR11(3)         --------->ARR14(2)       ----------->ARR10               ---------->DOF2 --------->MYB59  --------->YAB1   --------->YAB1 ->ANAC58<---------ARR14(2)     <----------DOF2                      <---------GLK1(1)            <-- --->GT1 --------->AGP1      --------->ARR11(3)                      --------->GLK1(1)            <-- ->ANAC58--------->ARR11(3)  <---------ARR11(3)           <-------TEIL  <-----------------AGL1    <--   aattaggctaagatccacaaccagaatatgacatctttcatcaaagtagtagtctcgaggttcacaattggatttctcactatggaagagaaggtttatg  4308000  Previous    Next  AGI:  At5g13430.1    Description:  ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative. similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68700.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulphur protein (InterPro:IPR014349); contains InterPro domain Rieske iron-sulphur protein, C-terminal; (InterPro:IPR005805); contains InterPro domain Ubiquinol cytochrome reductase tr Range:  from: 4305128    to: 4307516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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