Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ------->GAMYB                                             ------>MYB46(1)                                             ------>MYB83                                            --------->MYB52(1)                                            ----------->RAV1(1)                             <--------                                           --------->AtMYB61                            -------->ATHB1                                          --------->MYB46(3)                            <--------HAHB4                                       ------->GAMYB                                    --------->ATHB51                                      --------->MYB46(3)                                <---------ICU4                                  <---------ATHB12             <----------DOF2         <---------YAB1                     --------->YAB1--------->YAB1          --------->MYB46(3)          --------->ICU4                    ----------->HVH21 <---------MYB52(2)   <---------MYB111(2)     --------->LBD16                   --------->SPL7 --------->MYB46(3)      ------>MYB83  <------ZmHOX2a(2) <---------YAB1        <----------DOF2          --------->ANAC46         ------>MYB46(1)         <---------HSFB2a(2) ----->DOF2  <---------GLK1(2)  --------->WOX13(1)     --------->MYB46(3)         --------->HSFB2a(2)   aagtctccatctttagaatcgtatgacaatgctccaatcaacaaaccaacagaagaaaccaacaactttctgcgatcaaactctccagaattattaacac  4301400                                                                                         ------>MYB83                                                                                         -------->P                                                                                         ------>MYB46(1)                                                                                    --------->ANAC58                                              <-----------RAV1(1) ----------->GT1   --------->ANAC58                                            <---------At5g28300  --------->DAG2     --------->ANAC46           <---------ZAT2        --------->ICU4         <------ZmHOX2a(1)       --------->ANAC46           ----------->RAV1(2)   <---------YAB1      <------ZmHOX2a(1)          --------->ANAC58 ---GT1  <---------ALFIN1   ----------->GT1<-----------GT1      ---------->DOF2 --------->ANAC58   atccacaattcccacctgttttcaaaactgaagttataattcaattcactgttgaggaggaaacagaaaagtaaaactgtagaagcaagccaaccagaag  4301500                             --------->At4g35610                             <---------At4g35610                             <---------ZAT2           --------->LBD16                           <---------WRKY12       <-----------HVH21                         <-----------HVH21        <---------SPL7                        <------MYB83       ----------->RAV1(1)                      <---------WOX13(1)  --------->MYB46(3)                   <---------YAB1     --------->ZAT2<---------LBD16                 --------->At4g35610  <---------ZAT2--------->SPL7                <-------TEIL                 <---------At4g35610  --------->At4g35610                        --------->GLK1(2)      <------ZmHOX2a(1) <------MYB46(1) --------->RAP2.3(3)          --------->YAB1          --------    --------->ALFIN1--------->ATHB12  <---------At4g35610          --------->GLK1(2)----------->GT1   aacgaagaggagcgaagtcatctgattggtcagctaatcgagcagccacagtcgtccggcatctctgagaatcaaaatgagagattcagtgaataaaaag  4301600                                        --------->MYB55(2)                                       --------->ALFIN1                                   --------->SPL7                                  <---------SPL1(1)                                  --------->SPL1(1)                                 <---------SPL7                                <---------ANAC46                               <------NtERF2           --------->LBD16                              ------>NtERF2            ------>NtERF2                              <------------------SPL14<---------ANAC46                              <-----------HVH21      <---------LBD16                             <---------ANAC46      <---------ARR14(2)                             <---------DEAR3(1)    --------->ARR14(2)                             --------->DEAR3(1)   --------->HSFC1(2)                            ------>NtERF2         <---------HSFC1(2)                            <------NtERF2 --------->ALFIN1                            --------->RAP2.3(1)   --------->HSFB2a(1)                            --------->ATERF1(1)   <---------HSFB2a(1)                               -                           <---------RAP2.3(1)   ----------->ARR10        <---------------------WRI1-                           <---------ATERF1(1)   <---------HSFB2a(1) >>>>>>>>>GATA-4       --------->ANAC58                          <---------RAP2.6(2)    --------->HSFB2a(1) >>>>>>>>>GATA-2       --------->ANAC58                          <---------DEAR3(1)   <------ZmHOX2a(1)     >>>>>>>>>GATA-3     <------ZmHOX2a(1)       >>>>>>>>>TBF1     --------->SPL7<---------DEAR3(1)            >>>>>>>>>GATA-1 ---------->DOF2<    >>>>>>>>>TBF1        <---------ABI4(1)<---------ANAC46      <---------ANAC46  --------->At4g35610 >>>>>>>>>TBF1          --------->ALFIN1<---------MYB46(3)    <---------ZAT14  <---------At4g35610  - -->DOF2             --------->ALFIN1  <---------AtMYB61    --------->ZAT18    --------->At4g35610  -   gaagaagaagaagaaacagagagatggtgcggcgtcgtacggtggtggaggaagttccggcgagcgctgtggattgagggaagcagccaaaggacgaaat  4301700                                                                                                    <                                                                                                 ----         <---------ZAT6                                                                        <----- ------>NtERF2                              ---------->DOF2                                 --------- -------->bZIP60(1)                   ------->TEIL                      <---------DAG2      <-------- -------->ANAC58                  --------------->AtSPL8                <----------DOF2     --------- ---------bZIP60(1)               <---------------AtSPL3      --------->DAG2           --------->HSFC1(2) -------->ANAC46                  <---------------AtSPL8     ---------->DOF2       *TSS<---------HSFC1(2) -------->ANAC58               <---------AHL20(2)  --------->CCA1(2)  <---------At4g35610   <--------   tgacgccattagagtgaaacttaaaaaactgatttttttgtacgtctaaagagagatgagagataaagtctcagctttttatgtagagaggcttctagga  4301800                                                                                                   <-                                                                                                   --                                                   ------------>CBF                           ------- ------------CBF                                 --------->ANAC58                            -------- -------->CBF                           <---------DAG2                                      --------- -ZmHOX2a(1)                            <----------DOF2                                 --------->At5g28300 >HSFC1(1)                       --------->ANAC58--------->ANAC58                  --------->ARR14(2) -HSFC1(1)                       --------->ANAC58--------->ANAC46                  <---------ARR14(2) >HSFB2a(2)                 <----------ID1   <-----------GT1                   <-----------------AG<- -HSFB2a(2)         ---------->DOF2<------ZmHOX2a(1)  <------------CBF ----------->GT1 ----------->GT1   acaattgttcatataatccgaacaaagaagaagacaaggacacttttttactcgccaattgttttcagtgaaaatgtaaattacaaatacggtaaaaagt  4301900                                                                              <---------ICU4                                                                              --------->YAB1                                                                    --------->YAB1                                                                  --------->AtLEC2 --------MYB52(2)                                                 --------->ANAC58 ------->MYB46(3)  --------->At4g35610                            --------->ANAC58 ---->GT1     --------->YAB1                                     --------->WOX13(1)         --------- ->DAG2----------->RAV1(2)                 <---------KAN4(2)    ---------->DOF2        <----------DOF2 ->DOF2--------->At4g35610         --------->AHL20(2)   --------->ALFIN1   --------->WOX13(1)       - -----------MYB.PH3(2)         ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB46(3)   aacaaactcttctgaagcatcatcttacaagaacaaagaaaatagaataacccataatgtggaacatcaagcaaaatccatcataaccactttagaaagc  4302000                                                                   <---------YAB1                                                                 --------->YAB1                                                                 <---------ICU4                                                                 -------->HAHB4                              <-------TEIL          --------->MYB46(3)                   <---------STY1(2)                             --------->ARR14(2)<---------ANAC58 <---------YAB1           --------->STY1(2)                    --------->ANAC58     <---------YAB1       <---------ICU4          <---------ANAC58      <------ZmHOX2a(1)    --------->HSFB2a(1) <---------ANAC58 --------->ICU4        <---------ANAC58 ->DOF2             --------->ANAC58   <---------AHL20(2)  --------->YAB1      ------>ZmHOX2a(1) -------->YAB1    ---------->DOF2  <----------DOF2<---------ARR14(2)          --------->TOE2(3)   atgcataaggattgaagaacaaaagccaaaggttcttctttttattttagcgtaaccaaaaacataatgatgactcatttcctcaatggctggctagttt  4302100                             --------->At4g35610                             <---------ZAT2                             --------->ZAT2                             <---------At4g35610                        ------->TEIL                      <---------ZAT14              <---------ANAC58                   --------->HSFB2a(2)              <---------ANAC58   <---------GLK1(2)                ------>ZmHOX2a(1)  <-----------RAV1(1) --------->ZAT14            <---------HSFB2a(2)                      <----------DOF2  --------->ALFIN1 <---------ANAC46  <---------HSFB2a(2) --------->GLK1(2)             ------>ZmHOX2a(1)   gagagtgttggccttgtcttgcagtgtaccgagcagactctcgaaactcttcttgaaggaatctactccttcgtcttccaactgttctcctactttgttc  4302200                     --------->ZAT14                                                               --                     <---------ZAT18                                                              ---                     --------->ZAT18                                               <---------ARR11(3)                     <---------ZAT14        ----------->HVH21                      --------->ARR14(2)           <---------GLK1(2)              --------->At4g35610         --------->ZAT14             <--          <---------At4g35610          <---------At4g35610            <---------ZAT14------>ZmHOX2a(2)          --------->ZAT2     <---------GLK1(1)                     ------>ZmHOX2a(1)--------->At4g35610          <---------ZAT2 ----------->GT1  <---------At4g35610      =========================HOX2a_HOX2a         <---------TOE1(2)--------->At5g28300                   ---------->ID1     --------->ARR11(3)   cagtctattcccagcttctctagtgcactgtaaatcccttctgcttctgacacattcgcatctattgtcctcttcactattccatgatctgcgaatgctt  4302300  Previous    Next  AGI:  At5g13410.1    Description:  immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein. similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G19830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68705.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, FKBP-type; (InterPro:IPR001179) Range:  from: 4299708    to: 4301783    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g13420.1    Description:  transaldolase, putative. similar to unnamed protein product [Vitis vinifera] (GB:CAO68704.1); contains InterPro domain Transaldolase, bacterial/plant type (InterPro:IPR014634); contains InterPro domain Transaldolase subfamily; (InterPro:IPR004732); contains InterPro domain Transaldolase; (InterPro:IPR001585); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 4301795    to: 4304315    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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