Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->REM1(1)                    --------->TGA1a                                                 <---------ANAC55(2)                    <---------TGA1a                                                 --------->ANAC55(2)                    <---------O2                                  --------->ANAC55(2)                    --------->O2                               <---------MYB52(1)   --------->ANAC46         <------NtERF2        <-------TEIL                    <-----------HVH21     --------->ANAC58        --------->LBD16    <---------At4g35610            --------->AtMYB61         --------->ANAC58       --------->RAP2.6(2) --------->At4g35610    <---------RAP2.6(3)               ----------->GT1      <---------LBD16    <---------PCF2          ----------->GT1  <---------ANAC55(2)--------->LBD16 ----------ARR10    <---------ANAC46   <-------TEIL<---------MYB52(1)   --------->YAB1 --->LBD16        <-----------HVH21 --------->At4g35610  --------->MYB46(3)   ---------->DOF2--------   gtttcttagccggaaaactccgtcgtgggagctacatgagctacattccagccgttaaaaccaccgttacataagaataacaaagcccgtaacaaataaa  4292400                                                                  <---------YAB1                      --------->ANAC46      --------->YAB1      --------->YAB1                 >>>>>>>>>MYB98          <-----------GT1       <---------YAB1 <-------TEIL     <---------ICU4  <-------TEIL   ------>ZmHOX2a(1)         --------->ARR11(3)                   <- ->AHL20(2)  <----------DOF2  ------->TEIL <---------YAB1     <---------ARR11(3)    <---------GLK1(2)   cacaaactaatgacactttaacatacacaatgtatttcctgatttatcatacaagttatcgaaatatcataagtgataagtccatggattatcgagtttt  4292500                                                                                   <-----------HVH21                                                                                   <-----------TGA1                                                                                  --------->TGA1a                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                      ----------->GT1                             --------->O2    ---                                      <---------ANAC46                ----------->RAV1(1)         ---       <---------ETT(1)         --------->DAG2                       --------->ANAC58             ---      --------->SPL7           ---------->DOF2                       --------->ANAC58      ------>ZmHOX2a(1)   <------MYB83             --------->ANAC58                 ----------->TGA1     --------->ANAC58---   <---------MYB46(3)       --------->ANAC58    ----------->GT1    --------->MYB52(1)      ----------   <------MYB46(1)  --------->STY1(2) <---------ANAC58 --------->ANAC58           --------->bZIP60(2) ----------RAV1(1)  <---------STY1(2) <---------ANAC58 --------->ANAC58       <---------ALFIN1   ----   tttgttggtccgacaatattctagctaggcacgaaaagtcgcgtttaaaatagtgacactcaaatgacgaaacgacagtaccactcgtcactccttccat  4292600                                                                                  --------->AGP1                                                                                  <---------ARR14(2)                                                                                  <---------ARR11(3)                                                                              =======================                                                                              ---------->DOF2                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                       <------NtERF2                                                                      --------->TCP23                                                                      ----------->RAV1(1)                                                                     <---------TCP15(1)                                             ------>MYB83            <---------TCP20                                           --------->TOE1(2)         --------->PCF2--------->CCA1(2)                                           --------->TOE2(2)        --------->PCF5--------->ARR11(3)           <---------ANAC58   <---------ANAC46                      <---------PCF2--------->ARR14(2) -------->HVH21     <---------At4g35610  --------->AGP1             --------->ZAT18<------ZmHOX2a(2) ------>ANAC46 <---------ANAC58  <---------ZAT14                    --------->TCP15(1) ------>ANAC58--------->STY1(2)  <---------ZAT18          <---------YAB1<---------ALFIN1 ------>ANAC58<---------STY1(2)  --------->ZAT14          <---------TOE2(3) --------->ANAC58 -------->SPL14<---------ANAC58<---------At4g35610 <---------At4g35610--------->TCP15(2) ----->SPL7<---------ANAC58  --------->ATHB12------>MYB46(1)       <---------ATERF1(1)          -----   acgacagcgtttggctagcttgagctactattcagtggacacagacctacgagagctaataagattagagggccccacaagaaagatccaagggctatcg  4292700                  <---------ARR14(2)          <-----------TGA1          <-----------HVH21         <---------TGA1a         --------->ANAC58         <---------ANAC55(2)         --------->O2 --------->LBD16         --------->TGA1a                <------ZmHOX2a(2)         --------->bZIP60(1)           --------->ARR11(3)         --------->ANAC46              <---------ARR11(3)         --------->ANAC55(2)           --------->AGP1                --------->ANAC58         --------->ANAC55(1)           <---------GLK1(2)             --------->ANAC58         --------->bZIP60(2)           --------->ARR14(2)           <-------TEIL         <---------bZIP60(1)          --------->GLK1(1)            --------->ARR14(1)         --------->ANAC58             <---------GLK1(1)            --------->CCA1(2)         <---------O2 --------->HSFB2a(2)  ------>ZmHOX2a(1)      --------->ARR11(1)        <-----------STF1          --------->ANAC58                <---------GLK1(2)       <---------ALFIN1--------->ANAC46<---------ARR14(2)         <---------ARR14(2)      <---------ARR14(2)          --------->ANAC46                --------->ARR14(2)      --------->ARR14(2)          --------->ANAC58       --------->MYB52(1)     <-----------HVH21<---------HSFB2a(2)------>ZmHOX2a(2)      ----------->ARR10    --------->LBD16 <---------LBD16   <---------At4g35610<---------DOF5.7(2)       --------->GLK1(1)  <---------LBD16 --------->ARR14(2) ----------->ARR10  <---------WRKY12       --------->YAB1       < ==================bZIP_DOF<--------------OsCBT         --------->ZAT14     --------->WOX13(1)     <- ------------------>TaNAC69(2)  <---------ALFIN1  *TSS  <---------ZAT14   <---------ATHB12       ----   ctcatccggacacgtcactgtttccgcgaaatcaacacgcagatcctttcttcatcagtaaacggcgagattcgccatcaatctgaattccaaacaaaaa  4292800                                             ------>NtERF2                                            --------->PCF2                                           ------>NtERF2                                          <---------ATERF1(1)                                          ------>NtERF2                                        <---------LBD16                                      <---------ARR14(2)                                    <----------DOF2                                    <---------MYB46(3)                ------->TEIL                                 ------>NtERF2          <---------ATERF1(1)            --------->bZIP60(1) <------NtERF2----------->RAV1(1)    <---------ZAT14            <---------bZIP60(1)--------->LBD16         --------->DEAR3(1)          <---------ICU4       ------>NtERF2<---------TCP15(1)----------->RAV1(1)    ------>NtERF2           <---------At4g35610        ------->GAMYB--------->ZAT14   ----------->HVH21        --------->At4g35610        --------->ANAC46   ------>MYB83   --------->DEAR3(1)     --------->MYB46(3)<---------TCP20<---------ATERF1(1)                      -   <---------ETT(2)   --------->At4g35610 --------->LBD16 --------->DEAR3(1)                      ---  --------->ATERF1(1) <---------At4g35610<---------RAP2.6(2) <---------ALFIN1                     <-- ------>NtERF2     --------->LBD16<---------At4g35610 <------------MYB.PH3(1)                     === --------->LBD16 <------NtERF2 <---------LBD16<------NtERF2------>NtERF2  ------>MYB46(1)         --- ---------LBD16  <---------LBD16<---------DEAR3(1)    --------->MYB46(3)<---------MYB111(1)       --- --------LBD16  --------->MYB52(1)<------NtERF2      <---------At5g28300<---------MYB59  ------>ZmHOX2a(1) ----->GLK1(2)  ------>NtERF2 --------->DEAR3(1)    <-----------GT1 <---------ZAT18   ------>ZmHOX2a(1)   ttccggcgaccatgatgccaccggagctacagccgcggctgttccggccccatataaccgcctccaccagtgaacctactcaatcttcctcctcttactc  4292900   <---------TGA1a                                             --------->MYB46(3)   <---------O2                                           <------ZmHOX2a(2)   =========================MYC_MYB                       --------->CCA1(2)   --------->O2                                          --------->ARR14(2)   --------->TGA1a                                       <---------ARR14(2) ---------->HVH21                                        <---------ARR11(3) ------>At4g35610       <---------GLK1(2)                --------->AGP1 -------At4g35610  -------->P                         <---------HSFB2a(2) ===========================MYC_MYB                   --------->HSFB2a(2) ------>ANAC46    --------->WOX13(1)            =================HOX2a_HOX2a ------>TGA1a    --------->MYB46(3)             ------>ZmHOX2a(1)       <---------GLK1(2)        ----   acctcacatgagccctgcatcaaccagaaacttcatcgatcgagctactcctacttcgagatccaacaactctcgattctctccatcttccttcgcctac  4293000                                           ------>ZmHOX2a(1)                                  <------NtERF2                                  --------->ATERF1(1)          <-------GAMYB                                 <---------ATERF1(1)    <---------ALFIN1                                 ------>NtERF2         --------->ATERF1(1)                                --------->RRTF1(3)     <------NtERF2                                --------->DEAR3(1)    --------->RAP2.6(2)                                <---------ALFIN1      <---------ERF1                                --------->DREB2C(2)   <---------ATERF1(1)                                --------->RAP2.3(3)   ------>NtERF2                                --------->RAP2.3(2)   <---------RAP2.3(1)                                --------->RAP2.6(2)   <---------ORA47(2)                                --------->RRTF1(2)   --------->ATERF1(2)                               --------->ORA47(2)    <---------RAP2.3(2)                               --------->RAP2.6(1)   <---------ATERF1(2)                               <------NtERF2         <---------RAP2.3(3)                               --------->RAP2.3(1)   --------->ANAC46                               --------->RRTF1(1)    <---------DEAR3(1)                      ---------->ID1    ------>ZmHOX2a(1)   <---------LBD16        ------>ZmHOX2a(2)      --------->DEAR4(2)   --------->At4g35610        --------->ANAC58       --------->ERF1<---------ALFIN1  <---------MYB52(1)        --------->ANAC58       --------->ATERF1(1)  <------NtERF2        <---------ALFIN1      <-----       <------ZmHOX2a(2)      <---------RRTF1(1)   <---------ATERF1(1)  --------->ZAT14        <-----      --------->ARR14(2)      ------>NtERF2--------->HSFB2a(2)--------->LBD16--------->YAB1    ------      <---------ARR14(2)      <---------ATERF1(1) ---------->CDC5<---------MYB46(3)           <------ ----------------->WRI1       <---------RAP2.3(1) <---------DEAR3(1)    <---------ZAT14    ------>ZmHOX2a(1)   aatggacggatcgcaattgctcttgtcccttgcgccgccttcctcctcgacctcggcggcactccggttgtcgctacactcacaatcggcctcctcatat  4293100                                                                            <----------DOF2                                                                        <---------GLK1(1)                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                                       <---------AGP1                                                                       --------->ARR14(2)                                                                       --------->AGP1                                                  ------->TEIL   --------->ZAT2         --------->ARR14(2)            ------>ZmHOX2a(1)         <---------ZAT2  <<<<<<<<<TBF1         <---------GLK1(2)       --------->ATERF1(1)      --------->ZAT2--------->GLK1(1)         <---------ARR14(2)      --------->HSFC1(2)       --------->ZAT14------>ZmHOX2a(2)      <---------------------WRI1 <---------HSFC1(2)       <---------ZAT2<------ZmHOX2a(2) ----ARR11(1)                    <---------HSFB2a(1)  <-----------GT1  <---------ARR14(2) ----ARR11(3)                    --------->HSFB2a(1)<-----------HVH21 <---------CCA1(2) --->ARR11(3)            <---------ARR14(2) <---------ARR14(2)   <---------At4g35610 ---CCA1(2)              --------->ARR14(2) --------->ARR14(2)   --------->At4g35610              <--   cttacatcgtcgattctctcaatgtcaaattcggaggcttcctcggtatatggatgtcactgctcgctgctcagatctctttcttcttctcatcttctct  4293200                                                                          --------->ZAT2                                                                          <---------ZAT2                                  <---------LBD16                         <---------At4g35610                           <---------ANAC58                               --------->At4g35610                 --------->ARR14(2)                                      <---------MYB46(3)                 <---------MYB52(1)  <------NtERF2                      <---------DEAR3(1)               <---------ANAC58<---------ANAC58--------->ZAT14         <---------At4g35610       ------>ZmHOX2a(1)   <---------ANAC58    <---------ZAT14         --------->At4g35610    ------>ZmHOX2a(1)------>ZmHOX2a(1) <----------DOF2      <----------DOF2                         < --------DOF2  <---------ANAC58<---------ANAC58<---------ZAT18   ------>ZmHOX2a(1)                  <   cttttcctccttcaattccgttcctctcggcttgctcgcggcttttctctgcgctcagactactttcctcatcggctgctggacttcgctccaattcaaa  4293300  Previous    Next  AGI:  At5g13380.1    Description:  auxin-responsive GH3 family protein. similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13370.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13360.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13360.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN78161.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68714.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 4289842    to: 4292444    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g13390.1    Description:  NEF1 (NO EXINE FORMATION 1). similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ76346.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68713.1); similar to hypothetical protein MA4_111B14.46 [Musa acuminata] (GB:ABF72005.1) Range:  from: 4292750    to: 4296728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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