Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>ZmHOX2a(2)                                                           <------ZmHOX2a(2)                                                           --------->CCA1(2)                                                          <---------ARR14(3)                                                          --------->ARR11(3)                                                          <-----------ARR10                                                          --------->ARR14(3)                                                          --------->AGP1                                                          <---------ARR11(3)                                                          <---------ARR14(2)                  -------                                                         <---------GLK1(1)                    ------>MYB46(1)                                             <---------ANAC58                                 ------>MYB83                                             <---------ANAC58                               <--------                                       <---------REM1(1) --------->GLK1(1)        --------->DAG2                                       <-----------RAV1(1)--------->ARR14(2)   --------------->AGL15                                       =========================RAV            <---------------AGL15                                    <---------AtMYB61   ----------->ARR10     ----------------->AGL1          <------ZmHOX2a(1)       <----------DOF2      <------ZmHOX2a(1)      <-----------------AGL3   <---------LBD16                <---------MYB52(1)<-----------RAV1(2)       <-----------------AGL1   ctatgctcggaaggagacaatgaactacttctatccctttggtgttgccttggtgcaggagatctgctcttcttatgcctacaaaaattggaaacctact  4279000                                          --------->At4g35610                                          --------->ZAT2                        --------->ZAT2    <---------ZAT2                        --------->At4g35610                                                       ---  --------->YAB1        <---------At4g35610                                                    <----- <---------YAB1         <---------ZAT2    <---------At4g35610                                ------->GAMYB ->P              ---------->DOF2         ----------->RAV1(2)                               <-------- -MYB59  --------->ALFIN1    ------>ZmHOX2a(1)          --------->TOE2(3) <-------TEIL      ---------   cttatgaaaatgtgttgaactaaagcagctccttcttcactagcagctggacatcgaacattaatgtccatagaaattcgtttgcaaaacagcaacgatc  4279100                                                                                                   --     ----------->GT1                                                                               --    <-----------------------TaNAC69(2)                                                             --   --------->ZAT14                                                                                 -- ------->DOF2                                 --------->TOE2(3)                                    -- -ZmHOX2a(2)                                  --------->TOE1(3)                                    -- -MYB52(2)                  <---------HSFB2a(2)                                             <-------- >MYB46(3)                  --------->HSFB2a(2)                           ------>ZmHOX2a(1) ---------   caaagtgaagtaacaaatttgaaatttgttctcgacaaaatcgctaaaccctaaacctattctctaagccctaatcctattctctaatcccaagtatcta  4279200                                                                                                   --                                                                                                   --                                     <---------GLK1(1)                                         <-----                                 <-------TEIL                                                  <-----                                --------->CCA1(2)                                             <------                                --------->ARR14(1)                                          <--------                                --------->GLK1(2)                                           ---------                           --------->ANAC55(2)                                              ---------            --------->bZIP60(2)<---------GLK1(2)                                            ---------            ===============================================bZIP_DOF                        <---------ATERF1(1)            --------->O2   <---------ANAC55(2)        --------->ANAC58                    <---------DEAR3(1)            --------->TGA1a<---------TOE1(1)          --------->ANAC58                --------->ALFIN1            --------->ANAC46   --------->ARR14(2) --------->ANAC58                  <---------ANAC58 ------->ANAC46          --------->ARR14(1)     ---------->DOF2                     <---------ANAC58 ------->YAB1            --------->CCA1(2) --------------->AGL15               --------->ALFIN1------ ------->ANAC55(2)      --------->ARR14(2) <---------------AGL15             <---------ANAC46<------- ------->ANAC58         <---------ARR14(2) <---------ALFIN1   <-----------RAV1(1)   <---------ANAC46< ------->ANAC55(1)      --------->ARR11(1)----------------->AGL2      <---------ARR11(3)  <---------RAP2.6(2) ------->ANAC58       ----------->ARR10   ----------------->AGL3      <---------ARR14(2) --------->At4g35610 ---ARR10 ----------->RAV1(1)  <---------ARR14(2) --------->ANAC58    --------->ARR11(3) <---------At4g35610 >GLK1(2) <---------ALFIN1<-------TEIL  <-----------GT1       <---------MYB46(3)--------->REM1(2) <--   aacgtaattcccccacatcaccataagatacgagattcgatttctccacattaagcaaggaagattgttgcagaccttgatgtgtagggtgagcggctgc  4279300                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                                 <---------ATERF1(1)                                                                 <---------DEAR4(2)                                                                 <---------RAP2.3(1)                                                                <---------DEAR3(1)                                                          --------->At5g28300                                                          <-----------HVH21                                                          <------NtERF2     <---------ANAC46                                    <---------MYB46(3)    ----------->RAV1(2)                                  <---------DEAR3(2)    <------NtERF2                                       <---------DEAR3(1)   ------>NtERF2                                       <---------ABI4(1) <------NtERF2     --------->At4g35610                 --------->ATERF1(1) ------->ALFIN1 --------->At4g35610                    <------NtERF2 ------->ATERF1(1) <---------ZAT2                     <---------ERF1 -NtERF2        <---------At4g35610                   ------>NtERF2 ----At4g35610  --------->ATERF1(1)                   <---------RAP2.3(1) ---ERF1  --------->SPL7                              <---------ORA47(2) -At4g35610    ------>NtERF2                          <---------DEAR3(2) >ATERF1(1)    <---------ATERF1(1)                   <---------RAP2.3(3) >At4g35610  --------->RAP2.6(3)                   <-----------HVH21------>NtERF2 >ZAT2  <---------SPL7               <---------ANAC58<---------DEAR3(1) --->At4g35610<---------DEAR3(1) <-----------RAV1(2) <---------At1g77200                   --------->ANAC46 --DEAR3(1)----------->HVH21 <-----------HVH21   --------->DEAR3(2)--------->DEAR3(1)    <---------ANAC58 ---------ATERF1(1)<---------At4g35610        <---------ZAT14----------->HVH21           <---------ANAC58 ---------HVH21<---------RAP2.3(1)   <---------ANAC58<---------DREB2C(2)     ------>ZmHOX2a(2)      <   ggtcgcgcctggtacgacggctgctacgatgagtcacaggcgagcgagagtaccgtcggcggtgagacggcgacctagatcgcgagtcgtttcgagccat  4279400                 --------->ATHB12            <---------ICU4            --------->ATHB12            <---------AHL20(2)            <--------HAHB4            --------->ATHB51            -------->ATHB1            --------->AHL20(2)           --------->ICU4           <---------ATHB12           <---------ATHB51     <---------GLK1(1)       --------->LBD16        --------->ATHB12                         <---------TOE2(2)      --------->ANAC46 <<<<<<<<<<WRKY26                                --------->SPL7      --------->ANAC58 <<<<<<<<<<WRKY43                                <---------TOE1(2)     --------      --------->ANAC58 <<<<<<<<<<WRKY38                              <---------SPL7          <-------   --------->AtMYB61 ----------->GT1             <----------DOF2   --------------->AtSPL3    --------   --------->DEAR3(1)<------MYB46(1)             *TSS          --------->ZAT14               <-------   <---------ALFIN1<---------WOX13(1)            <---------DAG2<---------At4g35610      ------------>CBF  --------->MYB46(3) <------MYB83         <---------LBD16      --------->At4g35610   <---------DEAR3(2) -----------GT1 <---------AHL20(2)      <----------DOF2        <---------ZAT14      ------>ZmHOX2a(2)   tttcaccaccgcaattatttgattggtcaaattgatttctctctttcggagcttttttatgcgactgctctcgtacgatttatcgatcggttcaatattt  4279500                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ====                                                                                                 <---                                                                                                <----                                                                  <---------AHL20(1)            -----                                                                  --------->AHL20(1)            =====                                                                  <---------AHL20(2)            <----                                    <---------RAP2.6(2)           --------->AHL20(2)            -----                          ------>MYB83                        <---------YAB1                    =====        --------->DEAR3(2)------>MYB46(1)                     ------>ZmHOX2a(1)     <---------AHL20(2)      <-----------HVH21 ----------->HVH21                    --------->TOE2(3)      --------->AHL20(2)     --------->LBD16    <---------MYB59<----------DOF2      --------->YAB1          --------->AHL20(1)   <---------LBD16      --------->DEAR3(1)                <-----------GT1           <---------AHL20(1) <-----------GT1       --------->MYB46(3)            --------->AHL20(1)            --------->AHL20(2) ->AHL20(1)            --------->DEAR3(2)<---------AHL20(2)<---------YAB1     <---------TOE2(3) <---- --AHL20(1) --------->ANAC58       <---------LBD16   --------->AHL20(2)  <---------ZAT6 <---------AHL20(2) ->ARR11(3) --------->ANAC46    <---------ANAC58     <---------AHL20(2) <---------TOE1(3) <---------- --ARR11(3) --------->ANAC58    <---------ANAC58    --------->AHL20(2)  <---------TOE2(3)<-----------GT1   tgttaaccggacagacgcaagttgaaccgaccttgtttgcggtttaattcaaaaaaaaattatcctaattaattagggttaatgaataaatttatctttc  4279600                                                                                           --------->ANAC46             <----------DOF2           --------------->AGL15                             <---------ALFIN1 ----------->AGL15                    <-----------------AGL1                             --------->AtMYB61 ------HSFB2a(2)                      ----------------->AGL2                            --------->ANAC46 ----->HSFB2a(2)                      ----------------->AGL3                            --------->ANAC58 =======================================================MADS_MADS          ------->TEIL --------->ANAC58 ------------AGL15                    <-----------------AGL3             ------->GAMYB--------->ANAC46 -------------AGL2                    <-----------------AGL2            --------->MYB46(3) --------->ANAC58 ------------>AGL3              <---------MYB52(1)    <----------ID1    <---------MYB52(2) --------->ANAC58 ======================================================MADS_MADS  --------->ANAC46    --------->ANAC58 -------------AGL3             <-------GAMYB        --------->YAB1--------->ANAC58    --------->ANAC58 ------------>AGL2      <----------DOF2<---------------AGL15      --------->ANAC58<-----------HVH21 =======================================================MADS_MADS--------->SPL7   <-----------TGA1 -------------AGL1   <---------YAB1   <-----------------AG   <---------ATHB12  --------->ARR14(2) -GT1     <-----------GT1  <-----------HVH21 <---------TOE2(3)--------->YAB1   <---------ARR14(2)   taaaaatgggattttctttacttatgctttgtcagttaattctatttatggaaataagaacaaatcatacggcaacgaacatatcgtcacaccacaccat  4279700                                                                              --------->ANAC58                                                                              --------->ANAC46                                         --------->YAB1                       --------->ANAC58                                       --------->ANAC58    ---------->DOF2  <---------ALFIN1         <----------DOF2               --------->ANAC58--------->ANAC58    --------->ZAT2         <---------DAG2           <----------DOF2      --------->ANAC46    --------->ANAC46     <----  ----------->HVH21          ---------->DOF2           --------->ANAC58  <---------ALFIN1<---------TOE2(3) <---------WOX13(1)      ------>ZmHOX2a(1)    ---------->DOF2           --------->MYB46(3)      <----   ttgactgactgctttttctaatctctccttacaaagctttcaagcatagaaagacacaggccaaagctcatccatccacctcgccagaacaaaggtttgc  4279800                                                                                  --------->YAB1                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                            --------->ANAC58                              --------->CCA1(2)                         --------->YAB1                         <---------ANAC46                              <<<<<<<<<ARR2          <----------DOF2<---------ANAC55(2)                           <---------ATHB12    <---------ZAT14      <---------ANAC58                            --------->WOX13(1)    --------->ZAT14      <---------ANAC58                          ------------>CBF -----ANAC58             --------->ANAC55(2)           <-----------RAV1(1)---------->DOF2 -----ANAC58      ------------>CBF        ----------->GT1 <---------MYB46(3)--------->ANAC58   ttgctcttcactcttttgtaaacaatttcgtgatacgacttagaaggttttttttttttgttgttggcagacaatcaaaagcaagcatgttgccaaagtt  4279900  Previous    Next  AGI:  At5g13340.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G10890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24707.1) Range:  from: 4277942    to: 4279449    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g13350.1    Description:  auxin-responsive GH3 family protein. similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13370.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13360.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G13360.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN78161.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68714.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 4279887    to: 4282290    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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