Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                 <---------ETT(2)                                   -                         <---------ICU4        --------->At4g35610                                  -                        ------>ZmHOX2a(1)  <---------ARR14(2)                                      --                 <---------ALFIN1<---------------AGL15                                             --            --------->ANAC46     --------------->AGL15                                           ----        --------->HSFB2a(2)     <-----------------AGL3                                           ---- -------->YAB1 ----------->RAV1(1)         --------->GLK1(2)                                  <------ ------>AtLEC2--------->ANAC46  ----------------->AGL3                                       <------- --ZAT18<---------HSFB2a(2)     ----------------->AGL2  <----------DOF2                    --------->YAB1 --ETT(2)--------->ANAC46--------->MYB52(1)--------->ARR14(2)        <-----------ARR10<---------MYB59   attcaaaattccagacacaacacatcctaatggctccaaaattagtatctgttgacaacttttgaagaacaaatctcgcctaatatgacccaattttaac  4261900 -------->ANAC58                                            ----------->GT1 -------->ANAC58                                       --------->CCA1(2)         --------->LBD16 -------->ANAC46                                      --------->ARR11(3)        --------->HSFB2a(2) ---->MYB46(1)                                        <---------ARR11(3)        <---------ANAC58 ---->MYB83                                           --------->ARR11(1)        <---------ANAC58 ----->TOE1(2)                                    ---------->DOF2               --------->ANAC46 ----->TOE2(2)                               <------ZmHOX2a(1)                  --------->ANAC55(2) -----GT1                     --------->ANAC58   --------->TOE1(2)             <---------LBD16 ----GT1---------->DOF2       --------->ANAC58  --------->MYB46(3)  <---------MYB52(2)--------->TOE1(2)   ctacgacactaaaagactggacacatcaagacaagcacacatagacaggaaccaaagatatgtagtagaaacaaacctgtttgcggaacatgggagagtc  4262000                                                                                                -----                                                                         --------->ANAC58    --------                                                                         --------->ANAC58    --------                                                                       --------->ZAT6      <---------                                        ------>ZmHOX2a(1)         --------->YAB1   --------->ANAC58                                 <-----------GT1                 <---------YAB1    --------->ANAC58                             --------->AHL20(1)                  <---------TOE2(3) --------->ANAC46                             <---------AHL20(1)                 <-----------GT1  --------->ANAC46                ------->TEIL <---------AHL20(2)               <---------MYB52(2) <---------ALFIN1              <-------TEIL   --------->AHL20(2)             --------->WOX13(1)   --------->ANAC58      ----------->GT1  <---------At4g35610     --------->ANAC46--------->YAB1    --------->ANAC58   atcaagcttagtgaaatgcattttgagctaatttattacttcctcttcttcgacacaaacagcaattaacataacacgaacacacacaccaaaaacctaa  4262100                                                              ------>ZmHOX2a(1)                                                         ------>ZmHOX2a(1)                                                       ------>ZmHOX2a(2)                                                       ==============HOX2a_HOX2a                                                      ===============HOX2a_HOX2a      ----------->RAV1(1)                                                      <------ZmHOX2a(2)      --------->LBD16                                                     <---------ARR11(3)     --------->ANAC46                                                     <---------ARR14(2)     --------->LBD16                                                     --------->ARR14(2)    --------->HSFB2a(2)         --------->MYB46(3)                          --------->ARR11(3)    --------->LBD16       --------->AtMYB61                             --------->AGP1        <---------HSFB2a(2)      --------->MYB46(3)                             <---------GLK1(2)    <---------LBD16    <<<<<<<ZML2              ------>NtERF2          --------->GLK1(1)--------->HSFC1(2) ----->DOF2                 --------->ANAC46        <---------GLK1(1)--------->HSFB2a(1) ->TOE2(3)<---------ALFIN1  --------->RAP2.6(2)    ----------->ARR10 <---------HSFC1(2)  ------->GAMYB ->TOE1(3)--------->AtMYB61 --------->ANAC58    --------->TOE1(2)   <-----------ARR10 --------->MYB52(1) --------------TaNAC69(2)   --------->ANAC58   <---------ANAC55(2)---------->DOF2--------->CCA1(1)   aagctagaaccaccactatgtctcacacagacgccataaacgaacaaaaacgtgagatcctctcctcccaaagcttccccgaaatatccaacagaaacag  4262200                                                                                               ------                                       --------->ZAT2                                          <-----                                       --------->At4g35610                                   <-------                                       <---------At4g35610                                   <-------            ---------->DOF2            <---------ZAT2                                    --------->ALFIN1        ------>ZmHOX2a(2)        --------->ICU4                     ------------------------>ANAC81      --------->ARR11(3)    ----------->GT1             <---------HSFB2a(2)     --------->ANAC58      <---------ARR11(3)    --------->YAB1              --------->HSFB2a(2)     --------->ANAC58   aaaccgatgatcttcaaagtctcgagccaagcgtaattttgagctggtgtttttttctcgcgaaatcgagagagaacaaaacaagaaaacagtgggggtg  4262300                                                                                                ----- --->ALFIN1         --------->LBD16                    ----------->GT1     <----------DOF2  ------->GAMYB ----ANAC46       <---------LBD16                ---------->DOF2       --------->DEAR3(1)   --------- --ANAC58        *TSS                        ---------->DOF2         <---------At5g28300   --------->MYB46(3) --ANAC58        <---------LBD16           <---------ATHB12         <-----------GT1      <-----------GT1   tgttttttagatgaagtgtctcgggagaagagaagagacagacaaatcaaagaaaggaagaaaaaaaacttcaccgtctttgtgaaaattttaaccacaa  4262400                                               <------MYB83                                     ------>ZmHOX2a(2)     <---------bZIP60(1)                                   <---------ARR11(3)      --------->bZIP60(1)                                   --------->ARR11(3)   ----------->HVH21                                   <---------ARR14(2) --------->ARR14(1)                                  --------->GLK1(1)   --------->CCA1(2)                              --------->DEAR3(1)     --------->ARR14(2)                             <---------LBD16   <------MYB46(1)                            ------>NtERF2 <---------TOE1(3)<---------O2                           --------->DEAR3(1)  ----------->GT1                          --------->DEAR3(2)  <---------MYB46(3)                          --------->MYB46(3)  --------->MYB111(1)                         <---------DOF5.7(2)  --------->MYB59  <---------DEAR3(2)             -------                         <---------At5g28300  --------->MYB111(2)                          <------ZmHOX2a(1)               <---------ANAC58   <---------GLK1(1)----------->ARR10               ---------->DOF2               <---------ANAC58 <------NtERF2<--------P<-------TEIL           --------->AHL20(2)   <------NtERF2<---------RAP2.6(3)--------->ARR14(2)--------->ARR11(1)       --------->AHL20(1) <---------DEAR3(1)     <-----------GT1   <---------TOE2(3)--------->O2       <---------AHL20(2) ----->DOF2    <---------ANAC46--------->LBD16--------->MYB46(2)       <---------ZAT6     <---------ZAT14 >TOE2(3)     ----------------->AGL1<------ZmHOX2a(2)<---------ARR14(2)----------->GT1    --------->ZAT18   aagacggcgaaactatgccgttttagttaccgccggagatcgtgaaggttggtaagatacgacgtcgtttcaagtgtaaattttttaaagagaggactga  4262500                                                                         ---------->DOF2                                                                      <----------DOF2                                                                    <------NtERF2                                                                   ------>NtERF2                                                                  --------->ANAC46                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                 <-------PIF5                                                                 <-------MYC3                       --------->At4g35610                       ------->MYC2                       <---------At4g35610                       ------->PIF5             ---------->DOF2                       ----------->RAV1(2)                       <-------MYC2           <---------YAB1                   <-----------HVH21                             ------->MYC3         <---------ZAT6         <---------HSFB2a(2)                                    --------->ANAC58    ----------->GT1         --------->HSFB2a(2)                                    --------->ANAC58  --------->REM1(2)   <---------DAG2  <XXXXXXXXXXXXXXXXXXXXMIR398A                 --------->ANAC46  --------->ZAT14   <----------DOF2<XXXXXXXXXXXXXXXXXXXXMIR398B/C           --------->ARR14(2)     <---------ZAT14 ---->HVH21----------->HVH21         <------ZmHOX2a(1)     <---------ARR14(2)  <---------ANAC46    --   ctgtgctttttctgtaacagtggtcatctgagaaaacaaggactctggctaaaatccactatatccacgcgcctttaaagcccgtgtagtattaaagagg  4262600                 --------->REM1(2)                 <---------ZAT14                --------->ALFIN1               <-------MYC3               ------->MYC2               <-------MYC2               ------->MYC3              <------NtERF2              <---------ANAC58              <---------ANAC58             ------>NtERF2            <---------ANAC58            <---------ANAC46            <---------ANAC58           --------->ATERF1(1)                                    --------->PCF2           <------NtERF2                                         --------->TCP15(1)          <---------ATERF1(1)                                    <---------PCF2                <-----          <---------DEAR4(2)                                     --------->TCP20            <--------         <---------DEAR3(1)                                     ----------->HVH21 <---------ANAC58        <------ZmHOX2a(1)    <---------GLK1(2)                --------->ALFIN1    <---------ANAC58    --------->ICU4       --------->ANAC46   <---------YAB1  --------->ALFIN1   <--------P   --------- --------->GT1<---------ANAC46--------->GLK1(2)      --------->ALFIN1  <---------MYB52(1) <---------MYB52(1)   ctggaaattaggaggcgcgtgtagtaaacgcgattctctcgagagtattaatagagaggggagagtgggacccgttatctggttgcttctccattatctt  4262700                                                                                           <---------AHL20(2)                                   --------->ATHB12                              <---------AHL20(2)                                   <---------ICU4                           --------->ARR11(3)                                   -------->HAHB4                           --------->AHL20(1)    --------->LBD16               <---------ATHB12                          <---------AHL20(1)   <---------ANAC46       <---------ANAC58                                  <---------ARR11(3)   --------->HSFB2a(2)    <---------ANAC58                      <---------AHL20(2)         --------->AHL20(2)   <---------HSFB2a(2)    ----------->GT1                  --------->AHL20(2)    --------->AHL20(2)  <---------LBD16         <---------ANAC46                 <---------AHL20(2)  --------->TOE2(3) -----DOF2             --------->ALFIN1                <---------AHL20(2)  --------->CCA1(1) -ARR11(3)        >>>>>>>>>>>>>>>>>LFY             --------->ICU4          --------->RVE1(1) >ARR11(3)        <<<<<<<<<<<<<<<<<LFY   <----------DOF2   <---------AHL20(1)  <----------DOF2   ttgttccggagagacagagaggccagtggggtataaatgattccttttaagacatgtttattttattttatatgaaaatatctttaaatataaaaaattg  4262800  Previous    Next  AGI:  At5g13300.1    Description:  SFC (SCARFACE). similar to AGD1 (ARF-GAP DOMAIN 1), ARF GTPase activator/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G61980.1); similar to ARF GTPase-activating domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60860.1); similar to hypothetical protein OsJ_028814 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45331.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67895.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68686.1); contains InterPro domain BAR; (InterPro:IPR004148); contains InterPro domain Pleckstrin-like (InterPro:IPR001849); contains InterPro domain Pleckstrin homology- Range:  from: 4255604    to: 4262317    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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