Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                   --------->At4g35610                                                                           --------->YAB1  <-------TEIL                                                                 --------->ZAT18   <---------At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <-------GAMYB    <-------TEIL   --------->ARR14(2)  --------->bZIP60(1)               <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------At4g35610  <---------bZIP60(1)              --------->LBD16  <---------ABI4(2) --------->AHL20(1) <---------GLK1(2) ->TEIL                          <---------LBD16   --------->ANAC58   <---------AHL20(1) <---------ARR14(2) --->ARR14(2)            <---------AHL20(2)        --------->ANAC58   <---------ARR11(3)*TSS   ------ --->GLK1(2)             --------->AHL20(2)      ---------->DOF2<---------ZAT6  --------->At4g35610-- ----ARR14(2) ---------->DOF2<---------AHL20(2) <------ZmHOX2a(1)<---------ZAT18----------->RAV1(2)<-   cgggacatcagttttaaaaagctcgatttatataatccgcatgagttataggaaagcaccgttgtagtgcaaaatattcatcatctgctccgattcgttc  4222100                                                                                                <----                                                                                                <----                                                                                                <----                                                                                  <---------ZAT2-----           <---------At4g35610                                                    --------->ZAT2-----           --------->At4g35610                                                   <---------TOE1(2)---    --------->AHL20(2)   <-------TEIL                                           ------>ZmHOX2a(1)<--- ----->WOX13(1)         ------------------------>ANAC81                         ===================== ------>CBF<-------GAMYB--------->CCA1(2)              ------>MYB83             ===================== ---------->CBF      <---------TOE2(3)                 ------>MYB46(1)   ------------>CBF       ----- --------ATHB12      <---------YAB1     <------ZmHOX2a(1)           --------->GLK1(2)          <-----   aatcaattttttcagttgaaattaagattcagaaaaacaagaggaaaactaaacaccaacttcaaaacaaattctagcaatcctagcttagaaattcaga  4222200                                                       --------->GLK1(2)                                                       --------->ARR14(2)                                                       <-----------ARR10 -----ARR11(3)                                         ------->TEIL -----ARR14(2)                                    --------->MYB52(1) -----AGP1                                     --------->ANAC58      <------MYB83 ---->AGP1                                     --------->ANAC46      <------MYB46(1) ---->ARR14(2)                                 --------->ANAC58     <---------MYB46(3) --->ZmHOX2a(2)                               <---------TOE2(3)     --------->MYB59 ---ZmHOX2a(2)                               --------->MYB52(1)   <---------MYB52(1) ===HOX2a_HOX2a                              <---------DOF5.7(2) <-------GAMYB <---------At4g35610 ====HOX2a_HOX2a                          <---------At4g35610   <-----------RAV1(1) ---->ARR11(3)     --------->MYB52(1)     --------->At4g35610   <---------MYB46(3)         <--------- ----CCA1(2)     <---------MYB52(2)   <------ZmHOX2a(1)<---------ARR14(2)      --------->At4g35610 <-   tcttaaacatggaataacaaataacgaagagtattgagaaggagagctaacgaaacgaatctgagtctgttgggtcatcacagctacagccctcttttat  4222300                                                                                                 ----                                                            ------->MYC3                         <---                                                            <-------MYC3                         <---                                                           <---------TGA1a                 <------NtERF2                                                           <---------PIF3(3)              <---------DEAR3(2)                                                           <---------O2                   ------>NtERF2                                                           --------->TGA1a                <---------ATERF1(1)                                                           --------->O2                  --------->RAP2.6(2)                                                  ----------->RAV1(2)                    --------->ATERF1(2)                                                  ===================RAV                 <---------RAP2.6(2)                                                 <---------ARR14(2)                      <---------DEAR3(1)                                                 --------->GLK1(2)                       <---------ATERF1(2)                                                 --------->ARR14(2)                      --------->DEAR3(1)                                                 ------->TEIL   <-----------HVH21       --------->DEAR3(2)                                                 <-----------ARR10                      --------->ATERF1(1)                                        <------MYB46(1)  ----------->RAV1(1)     --------->ATHB12---- --------->ALFIN1                       <------MYB83     <---------ALFIN1        --------->ATHB51<--- -DOF2  <----------DOF2  --------->TOE2(3)      <---------ARR14(1)              <---------YAB1  <---- --------ANAC46       --------->GLK1(1)--------->MYB59<---------PCF5--------->ZAT6<------------CBF   agggtgaagcctttagactcagagaaaccctagttttgaatttggttatcgaatctgggccacatgggtcacactattacacattattgggccggcccat  4222400           <------MYB83           <------MYB46(1)    <---------AHL20(2)                                                          <---------ZAT14    --------->AHL20(2)                         --------->MYB52(1)               --------->ZAT14  <----------DOF2                    --------->ZAT2                      --------->ZAT6 ----->ARR14(2)                  ------>ZmHOX2a(2)                 <------------CBF ------ARR11(3)          --------->ATHB12     <---------ARR14(2)   --------->ARR14(2) ------ARR11(1)        --------->GLK1(2) ----------->GT1           <---------ARR14(2)     ---------->ARF1 ----->ARR11(3)     --------->LBD16  <---------ZAT2              --------->LBD16--------->ZAT18 ------ARR14(2)    --------->HSFB2a(2)  ----------->GT1        <---------LBD16  <---------ZAT18     < -----CCA1(2)      <---------HSFB2a(2)<---------MYB52(1)     <-----------GT1  --------->ANAC46<------   atctctttaaatttggtttatccagaatcattcgatctcagttgggaaaaaccggttttgaataaaccggattggacactactccactacttgtctccac  4222500                                                       <---------TOE2(2)                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                               --------->DEAR3(1)                  ------>ZmHOX2a(2)          <---------ZAT18                <---------ARR11(3)           <---------At4g35610    --------->At4g35610         <---------LBD16                     --------->LBD16      ------>ZmHOX2a(2)   --------->ANAC58                         <---------ANAC46    <---------ARR14(2)   --------->ANAC58                        <---------LBD16  --------->YAB1 ---------ZAT2  --------->ARR11(3)     <-----------RAV1(1)<---------WOX13(1) ---ALFIN1 --------->LBD16       <--------ATHB1----------->ARR10--------->ARR14(2)      <-----------RAV1(1)   tctgctcgtaatccgcatgatcgtgttcatgagaataattcatgttgcgcagactcgcagattgatgatccgatgcaatcgcattcgacaatgtgggttt  4222600                                                                        --------->ZAT14                                                                   --------->SPL7              ------                                               <---------TOE1(2)<---------ANAC58               <-----                                  <---------ARR14(2)            <---------ANAC58     --------->At4g35610            <------NtERF2         <---------GLK1(2)            <---------ICU4     <-----------HVH21           --------->LBD16        --------->ARR14(2)          <---------YAB1     --------->DEAR3(1)           ------>NtERF2       <---------TOE1(2)     ----------->ARR10  <---------ZAT14      --------         <---------LBD16 <---------GLK1(2)    <-----------RAV1(2) --------->MYB52(1)<---------DEAR3(1)   tctgtgaaaactgcggcattggatttagaatcgtcggattcgataatcccaggcttagactctcatgcttacggtgcaatgctccgtcgctgcattcaga  4222700                                                               <----------DOF2                                                              <---------DAG2                                                            <---------ARR11(3)                                                        --------------------->WRI1                                                   <---------HSFB2a(1)                                                   --------->At4g35610                                                   --------->HSFB2a(1)     <---------MYB59      <---------ICU4           --------->HSFC1(2)     ----------------->AGL2                        <---------At4g35610     ----------------->AGL3                        <---------ZAT2  --------->ANAC46 --------->MYB46(3)       --------->ATHB12  ---------->DOF2 --------->ARR11(3) --->At4g35610  ---------->DOF2    --------->ARR11(3)  <---------ANAC46 <---------MYB52(2)        --- ----At4g35610--------->At4g35610  <---------ARR11(3) --------->At4g35610          --------->ANAC46 ->YAB1       <---------At4g35610 --------->REM1(1)<---------HSFC1(2) ----------->RAV1(1)       -----   agaacgacccaatttcagcaaaggctattcattgcgacatcttgaagaaaggaagctgcttagaccttttcgccacaaacattctactcaacgcttatgt  4222800                                                                                                    -         ----------->HVH21                                                                          >       <----------DOF2                                                                              <      <---------ANAC46                                                                             <-      <---------ANAC58                                                                            <--      <---------ANAC58   <-----------GT1                                                          --- --------->At4g35610----------->GT1                                                               --- <---------ZAT2     <---------ANAC58                                                     <---------ANAC58 --------->ZAT2     <---------ANAC46                                                     --------->ANAC55(2) <---------At4g35610<---------ANAC58                           <----------DOF2           <---------ANAC58 ------->DOF2      <-------TEIL                        <---------ICU4       <---------LBD16       <-- ------>HVH21---------->DOF2        --------->ANAC46  --------->ICU4 <-----------GT1     <---------ANAC46   gaaagctggctttgacaaagatgcgttaaacctgttcgacgaaatgcctgagagaaataatgtctcttttgttactcttgcgcaagggtatgcgtgtcaa  4222900                                                     --------->TGA1a                                                     --------->ANAC55(1)                                                     <---------TGA1a                                                     --------->ANAC46        <---------ANAC46                             --------->ANAC55(2)      <---------MYB46(3)                             --------->ANAC58 ----->ZmHOX2a(2)                                    --------->ANAC58                           <---- >>>>>>>>>>>>>>>>LFY                                 <---------O2                 <---------MYB52(1) <<<<<<<<<<<<<<<<LFY                                 =======================bZIP_DOF            ----- -----ZmHOX2a(2)                                     =======================bZIP_DOF            <---- -------ARR11(3)        <---------AtLEC2             --------->O2   <---------ANAC58         -------- ------>ARR14(2)     ==========================================MYC_MYB        <---------ANAC46  ----- ------>ARR11(3)     <--------P   <-----------HVH21<---------ALFIN1 <---------ANAC58--------->MYB52(2) -------ARR14(2) <-----------RAV1(2)     --------->At4g35610     <----------DOF2<---------MYB46(3)  -   gatcccattggtttgtattccaggttgcatcgagagggtcatgagcttaatccacacgtcttcacttctttcttgaagttgtttgttagtttggacaaag  4223000  Previous    Next  AGI:  At5g13225.1    Description:  snoRNA. snoRNA Range:  from: 4222006    to: 4222088    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g13230.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G27610.1); similar to hypothetical protein OsI_011839 [Oryza sativa (indica cultivar-group)] (GB:EAY90606.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71462.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70057.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4222517    to: 4224985    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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