Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ================================HOX2a_HOX2a            ------>ZmHOX2a(2)           <------ZmHOX2a(2)           =================================HOX2a_HOX2a          --------->ARR14(2)                   <---------ANAC46          <---------HSFB2a(2)          <---------ARR14(2)                   <---------ANAC58          --------->HSFB2a(2)          ------->TEIL                         <---------ANAC58      <---------GLK1(2)  ----------->HVH21                       --------->ATHB12           --------->ARR14(2) ---ZmHOX2a(2)                       ------>ZmHOX2a(1)               <---------ARR14(2) ---->ARR11(3)--------->LBD16   --------->GLK1(1)            --------------------->WRI1   tcaattgacatggatccgaaattgccgattgcacatttcctcgatgatttcttgtaatcgagtcatagaacgattcgcgaacaataaactctaaaatcgt  4206000                                                                                                    -                                                                                                   <-                                          ---------->DOF2                                          <-                                         <---------ATHB12                                         ---                                     --------->LBD16                                              ---                   <------MYB46(1)   <---------RAP2.6(3)                                          ---                   <------MYB83      ------>NtERF2                                             <-----           --------->TOE1(2)        --------->ANAC46                                           <-----           --------->TOE2(2)        --------->RAP2.6(2)           --------->ALFIN1             ------          ================================RAV                  <------ZmHOX2a(1)    --------->At4g35610          ----------->RAV1(2)      <---------LBD16          <-----------RAV1(2)     <---------At4g35610       --------->KAN4(2)      <-----------RAV1(1)          --------->At4g35610   <---------MYB52(1)--     ---------->TaMYB80       --------->ALFIN1       ---------->DOF2   ----------->GT1         ------   ataagtgaatatacctgagattggtgagaccagtgttgccgcaataaaggcaattgaaaggagcaggagtgtctcgataaatcgtttgctgaatcggagc  4206100                                        ------>NtERF2                                       --------->LBD16                                       ------>NtERF2                                      <---------RAP2.6(2)                                     <---------LBD16                                     --------->RAP2.6(3)                             <------NtERF2       <------ZmHOX2a(2)    <---------RAP2.3(1) --------->MYB52(1)         --------->RAP2.6(2) ------>MYB83               <---------DEAR3(2)               ------>NtERF2 ------>MYB46(1)            <---------ORA47(2)             <---------LBD16 -------->MYB55(1)          <---------ATERF1(1)          --------->PCF2 --------MYB52(2)           ------>NtERF2           --------->GLK1(2) --------MYB55(2)          <---------RAP2.3(3)     <---------GLK1(2) ------>ANAC46             --------->ATERF1(2)     <---------ARR14(2) ------>ANAC58             <---------ATERF1(2)     --------->ARR14(2)                  <---------MYB46(3) ------>ANAC58             <---------RAP2.3(2)  --------->ANAC55(2)                   <---------MYB52(1) ----At4g35610             --------->ANAC46     <---------ANAC55(2)                  <-------GAMYB ----ZAT18                 <---------DEAR3(1)  <---------LBD16--------->ANAC46    <---------At5g28300 --->At4g35610            <---------LBD16    --------->ARR14(2)          <---------GLK1(1) ------->MYB46(3)        <---------RAP2.3(1) <---------ARR14(2)          --------->GLK1(1)      <---- --->ZAT2 <---------YAB1<---------DEAR3(1) ----------->HVH21 --------->LBD16    <------ZmHOX2a(2)   acccaacggatcaccatagatagcattcggcggcacaattccggcctgatacggattctgccccgcgtaatatggaactccgatcaccgttgttccctct  4206200                                                                 --------->YAB1                                                                <---------ATHB12                                                              --------->WOX13(1)                                     --------->MYB52(1)     <---------ATHB12           --------->At4g35610                             --------->WRKY18(1)     --------->DAG2                    <---------ZAT2         <----------DOF2 <---------At5g28300        ---------->DOF2                    <---------At4g35610 ------DOF2             <-----------GT1           --------->ARR11(3)                  ------->TEIL --   ttcgccatctcctttgtttttagtttttacggtcaaactcaacgatttcgaagataaagcaaatcaatcacaacgagagaaacagacgaagctgattcga  4206300                                                                                                  <--                                                                          <---------HSFC1(2)    <----                     --------->ANAC46                                     --------->HSFC1(2)    <----                  <---------ARR14(2)                                      --------->HSFB2a(1)   <----                  --------->ARR14(2)  --------->LBD16                     <---------HSFB2a(1)   <----         <---------AHL20(2)          --------->LBD16                    ---------->DOF2         -----         --------->AHL20(2)         <---------LBD16                  --------->ANAC58        --------        --------->AHL20(2)     --------->KAN4(2) --------->ANAC46    --------->ANAC58     <---------YAB1     --------->AHL20(2)    --------->YAB1       <---------LBD16   <-------TEIL   <---------CCA1(2)<--     <---------AHL20(2)   <---------YAB1       <---------ANAC46  --------->CCA1(2)     ----------->HVH21 --------->GT1   <----------DOF2   <---------LBD16--------->LBD16--------->GLK1(2)     ----------->TGA1   agagtatttatttaattccctttccgctatgaaaattcccagggaaattacgcggaagacgatggagattcaaggaaagttccaaatctctgacgattac  4206400        <---------AHL20(2)        *TSS     ------->TEIL   <---------ZAT14   --------->ZAT18   --------->ZAT14   <---------ZAT18                                               <---------HSFB2a(2) -------ANAC58                                                   <---------HSFC1(1) -----ANAC55(2)                                                  --------->HSFB2a(2)            <---- -----ANAC46                   <---------YAB1                    --------->HSFC1(1)            <----- -----ANAC58                 --------->YAB1               <----------DOF2            --------->ANAC55(1) -----ANAC58                --------->ICU4    <----------DOF2  ------>ZmHOX2a(1) <---------ALFIN1 ---->ANAC55(2)         ------------>CBF   --------->GLK1(2)  ======================================= ->ARR14(2)            --------->YAB1     <---------GLK1(2)   --------------->AGL15<---------ALFIN1 -------ANAC58 <---------TOE2(3)      <-----------GT1 <----------DOF2   --------->CCA1(2)      <-----   gcgtgtgtacttaatttgagattaatcgcaattttgatttcaacgattctttgattctttctttcctctagaagatagagactccacacttaatgggcct  4206500                                                  <--------ATHB1                           --------->ARR14(2)     --------->ATHB51                           --------->ARR11(3)     <---------ICU4                           <---------ARR11(3)     --------->YAB1                <---------ANAC58                  --------------->AGL15           -------->HAHB4                <---------ANAC58                  <---------------AGL15          <---------YAB1                 <---------ANAC46  ---                 <---------ANAC55(2)             <---------ATHB12            <----------DOF2     <--- ------DOF2      --------->ANAC55(2)             --------->ICU4             <---------ANAC58  ------- ----DAG2--------->TOE2(3) <---------ARR14(2)    <---------ATHB51           <---------ANAC58  <------ =================================MADS_MADS   ------------>ATHB5         >>>>>>>ZML2          ------- -----DOF2 --------->AHL20(2)          ---------->DOF2            <---------MYB52(1)          <------   tttgtttataaacttaaatacttaatacagatattgggctcaaaaggcctaataattgtcttagacctgttcgttctagctttcgtctaaattgcaaggt  4206600                                      --------->ANAC58                                      --------->ANAC46                                      --------->ANAC58                                     --------->TOE1(2)      ---------->DOF2               ---------->DOF2 ------>MYB52(2)                --------->MYB46(3)             --------->ALFIN1       --------->ALFIN1 ----TEIL                       <---------MYB52(2)            <-------MYC3           ------->MYC3 -->HSFC1(2)                --------->At5g28300               ------->MYC3           <-------MYC3 ---HSFC1(2)                --------->DOF5.7(2)               <-------MYC2           ------->MYC2 -->HSFB2a(1)              ----------->GT1                    ------->MYC2           <-------MYC2 ---HSFB2a(1)          ----------->HVH21            ---------->DOF2        ---------->DOF2   tcgtttttaaaagtgaagtttgagtttgacggtaacaaacaagcgatggactacaaaagaagaacgtgttggactacaaaagaagaacgtgttgtttagg  4206700                                                                                             --------                                                                                             --------                                                                                             <-------                                               --------->ARR11(3)                            --------                                               <-----------GT1                              <--------                                          --------->AHL20(2)                                ---------       <---------DDF1                <---------DAG2                              --------->At4g35610       <---------RAP2.6(3)           --------->TOE2(3) <---------ICU4         <-------TEIL  <--------       ------>NtERF2      <-----------HVH21<---------AHL20(2) --------->At5g28300<---------At4g35610      <---------ETT(1)   --------->bZIP60(2)   <---------ARR11(3)           --------->ARR14(2)      - <----------DOF2         --------->ANAC46 <---------AHL20(2) ----------->GT1<---------ARR14(2)     <-   cctctttgccgacatagcagagagtccatgtcacaatcaccttatttattatcttcttcattactgtaattacaagaagattcagcaaaatgtaatcatt  4206800                                                        <---------ANAC46                                                        --------->ANAC55(2)                                                        <---------ANAC55(2) >ATHB1                                              <---------MYB52(1) ->ATHB12                                --------->KAN4(2) --ICU4                                 --------->KAN4(1) ->YAB1                                 <---------HSFC1(2)                      <------ZmHOX2a(1) -YAB1                                  --------->HSFC1(2)                    <---------TOE1(3) >ICU4                                  --------->HSFB2a(1)              <---------MYB46(3) -ATHB12    <----------DOF2             <---------KAN4(1)          --------->TOE2(3) ---------->HVH21    --------->ARR11(3) <---------HSFB2a(1)     <---------CCA1(2) --------WOX13(1)    <---------ARR11(3)<---------KAN4(2)<---------ANAC55(1)   <---------TOE2(3)   gaatgacacagagacttttctaaaatcttgtatttatcaagaacattctaaaaccattatgtgttcttatcttattggttaaggattaaactaaatgtca  4206900  Previous    Next  AGI:  At5g13190.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK93196.1); contains InterPro domain LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629) Range:  from: 4204820    to: 4206408    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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