Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->GLK1(2)                                                                                 --------->ARR14(2)                                                                        --------->CCA1(2)                                                                       --------->ARR11(1)                                    --------->ANAC58                   <---------ARR14(2)                                    --------->ANAC58                   --------->ARR14(2)                                  --------->MYB46(3)  --------->TGA2(1)<---------ARR11(3)                              --------->AHL20(2)      <---------bZIP60(1)       <---------GLK1(2)                       --------->At4g35610            <---------TGA2(1)--------->ARR11(3) --------->TOE2(3) ----------->GT1       <---------At4g35610            --------->bZIP60(1) <---------YAB1  --------->TOE1(3) ------>MYB52(1)       <---------ZAT2--------->MYB46(3)        <---------MYB52(2)<---------ARR14(2)   taatggaaaaaaaaaactaagagtaagctgaataaaacaaccaattccatcaaatgacatcagtgactaacaagatatgagagaatccctaacctcagca  4164400                                                   --------->ALFIN1                                                  <------ZmHOX2a(1)                                             ----------->HVH21                                         --------->TGA1a                                         <---------ANAC46                                         <---------ANAC55(2)                            =======================bZIP_DOF                            <----------DOF2--------->ALFIN1                <-------GAMYB                      --------->MYB55(2) <---------O2             <------NtERF2                      <---------MYB46(3) <---------ANAC58        --------->LBD16                      --------->ABI4(2)  <---------TGA1a        <---------DEAR3(1)                     --------->ALFIN1    ============================MYC_MYB                     <---------AtMYB61   ==========================================MYC_MYB                  <---------DEAR3(1)     <---------ANAC58 <----------CDC5  --------->At4g35610                 --------->At4g35610     <---------ANAC55(1)    <---------ANAC46              ---------->DOF2            --------->O2<------ZmHOX2a(1)     <---------At4g35610              =====================================bZIP_DOF    <---------LBD16   ttggattgaacagagaaacagcggtggtttcttttggtataagacgtgtgaaggaggagcgatgaggcggagaagggagttgaagacgagaacgagattg  4164500                       --------->YAB1                 --------->ANAC58                 --------->ANAC58                <---------ZAT18                --------->ZAT18             <---------ANAC58             <---------ANAC58             <------MYB83             <------MYB46(1)            <-----------RAV1(1)            --------->MYB111(1)          --------->CCA1(2)          --------->ARR14(1)         --------->ARR11(3)                                                     <---------ZAT2         <---------ARR11(3)                                                     --------->ZAT2         --------->ARR14(2)                                                     --------->At4g35610         <---------ARR14(2)            ----------->HVH21  ===========================HOX2a_HOX2a <---         --------->ARR11(1)       <-------TEIL         --------->ATHB12         <---------At4g35610        <---------HSFB2a(1)      <--------P     <---------AtMYB61      <---------ANAC46      <-------       ----------->ARR10  ---------->DOF2---------->DOF2  ------>ZmHOX2a(2)   <------ZmHOX2a(1)  ----   aatcgaaggaagatttggtgcgcaatcggaaagaggtagatgtgaaagcggaggtattgatcggagaaagtcttcgtggaggagctgagagcgacttcgg  4164600                                                                                           --------->ANAC58                                                                                       <---------AHL20(2)                                                    ----------->GT1            <----------ID1          --------->YAB1                     --------->At4g35610              ----------->GT1       --------->YAB1                      ------------------------>ANAC81   --------->DAG2--------->ANAC58      <---------YAB1                      ---------->DOF2                  ---------->DOF2 --------->ANAC46 >>>>>>>>>>WRKY63                   --------->At4g35610               <----------ID1   --------->AHL20(2) ------ARR14(2)             <-----------RAV1(2)    --------->DAG2  ---------->DOF2 --------->ICU4 --LBD16 <---------YAB1 ---------->DOF2--------->At4g35610     ------------------------>ANAC81------- ----->ARR14(2) ------->GAMYB  <------ZmHOX2a(1) ---------->DOF2 --------->YAB1----------->GT1-------   atttgactatgatgataaccgaaaattagagcaggagaagcagaagaagcggaaaggtaaaacaaaatcaaaagtacaaaagggaaaaattaaacgcacc  4164700                                                               <------MYB46(1)                                                               <------MYB83                                                               --------->At4g35610                                                              --------->MYB111(2)                                                    <---------------AGL15                                               <-------GAMYB  --------->MYB55(2)                                              --------->MYB55(2)                                              --------->MYB52(2)             ----------->HVH21                                          <---------ANAC58    --------->MYB46(2)                        --------->At4g35610   <-----------RAV1(1)            ----------->TGA1                        <---------At4g35610   <---------MYB46(3) ----------->HVH21                <------NtERF2             <---------ANAC46    <---------MYB46(3)                   --              --------->RAP2.6(2)         <---------ANAC58    --------->MYB111(1)                  -- >TEIL        <---------ETT(2)        <---------ANAC58       <--------P--------->ALFIN1*TSS<---------ZAT6 ---->RAV1(1) --------->ETT(2)        <---------ANAC58       <---------MYB55(1)   <----------CDC5  --   agagtcatcgacaaggtcgccattggagctcaaaactcttgctcgcgtttgttggcaaaaatggtaggtgaaggtgaaggtgacgatgagcgagtgatag  4164800                                                        <---------ANAC58                                                        <---------ANAC55(1)                                                        <---------ANAC46                                                        <---------TGA1a                                                        --------->ANAC55(2)                                                        <---------ANAC55(2)                                                        <---------ANAC58                                                        --------->O2                                                        <---------O2                            <----                                                     <---------MYB52(1)                         -----                                                     <---------ARR14(2)                       <------                                                    <-----------HVH21                       <--------                                                    ==============MYC_MYB                  --------->TGA1a                                                    <-------GAMYB                          <---------At4g35610                                                    =================================================MYC_MYB                                                   <---------DEAR3(2)                      ==========                                                  <---------ANAC46                         --------->At4g35610                                                  --------->ATERF1(2)                     --------->MYB59                                                ------------>AtMYB77                   <-----------HVH21                                               ----------->HVH21                       <---------PCF2                                              ------->PIF5                            <------MYB83                                              <-------PIF5   <---------ANAC58         <------MYB46(1)                                             <---------At4g35610                     <---------MYB46(3)                                      <---------MYB52(1)<---------bZIP60(2)         --------->ALFIN1                                      --------->ARR14(2)--------->TGA1a           <---------ANAC46 ---------->DOF2                  <---------At5g28300--------->ARR14(2)           <---------ANAC58  - ------->ANAC58                  <-----------GT1------>NtERF2<---------ANAC58     <---------ANAC58  < ------->ANAC46           ----------->GT1    ----------->RAV1(2)                <---------YAB1<------ ------->ANAC58  <-------TEIL --------->MYB52(2)==================MYC_MYB------------>CBF<-----------RAV1(2)   cacgaaagagtctgagaaatacattccatggttatttacagttatgcccctgccggttacgtggcttcgcatcgagtcaattttgagtgggtcaggtcag  4164900    ------>ZmHOX2a(1)   --------->TOE1(2) <------ZmHOX2a(2) -----At4g35610 ---->At4g35610 ---WRKY12                    ------------------------>ANAC81 ---HVH21  --------->YAB1 ---------->DOF2                                                          -- ====================================bZIP_DOF                                                 ------>MYB83 -------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ZAT6                ------>MYB46(1) ---------ARR14(2) ----------->RAV1(2)                     <---------ICU4                   --------- -----RAV1(2)    <-----------GT1     ---------->DOF2    --------->YAB1                      ---------   ccgatcctatgaagcatatttacctgtgcaaagtgcaaacaaagaaaaactcatcgtatcaaaatgacactaatctcataaactaaaatacaaacctact  4165000                                                                               <-----------GT1                                                                             <---------AHL20(2)                                                                          --------->AHL20(1)                                                                          <---------AHL20(1)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                        --------->AHL20(1)              --------->ZAT18               --------->AHL20(2)          <---------AHL20(1)  --------->AHL20(2)               <---------AHL20(2)             <---------ATHB12                  < ------->YAB1 <---------ZAT14     --------->AHL20(2)     <---------ICU4 <---------ARR11(3)      ----- >TOE1(2)     <---------ZAT18  --------->AHL20(2)     --------->TOE1(3) --------->ARR11(3)     <xxxxx >TOE2(2)<---------ANAC46      <---------AHL20(2)     --------->TOE2(3)--------->YAB1     --------->ARR14(2)   ataagaaaatagtgtgttcactatttctgatatttatttaatataagaaaataaaaccataaatacaaatcaaaaatattttttcaaaacaaaatatgca  4165100                                      --------->AHL20(2)                                      <---------AHL20(2)                                     --------->AHL20(2)             ------->GAMYB           <---------AHL20(2)           <---------At5g28300    --------->AHL20(2)                       --------->LBD16          <-----------GT1         <---------AHL20(2)                      <---------ANAC46   --------->LBD16               <---------YAB1                           --------->ANAC55(2)  --------->ANAC58         --------->AHL20(2)                             <---------ANAC55(2)  --------->ANAC58         --------->AHL20(1)                        --------->YAB1 --------->LBD16           <---------AHL20(2)                     --------->WOX13(1) <---------LBD16          <---------AHL20(2)           --------->AHL20(2)<---------LBD16         ---- ---------ANAC46          --------->AHL20(2)----------->GT1<-----------RAV1(1)                 <----- -->TEIL  --------->MYB52(1)   --------->AHL20(2)  <---------TOE2(3) <---------ICU4            ------ xxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1  --------->YAB1   <---------YAB1            <---------ZAT6   tcgcgcggaaattaaccgagtcatataaaaaaattataaattaatacagttataagattatatgttgtcattcattacggaaatagaaggtagagttgat  4165200                                                                                         --------->ANAC46           --------->ANAC58                                                              --------->ANAC58           --------->ANAC58                                  --------------->AtSPL8      --------->ANAC58       --------->ANAC46                                   <---------AHL20(2)       --------->At5g28300       --------->ANAC58                                  <---------AHL20(1)       ----------->GT1       --------->ANAC58                        --------->ANAC46          <---------AHL20(2) -->ZmHOX2a(2)                   --------->AHL20(2)      <---------AHL20(2)    --------->MYB52(1) ----ARR11(3)              --------->YAB1    <---------DOF5.7(2)<-----------GT1<-----------GT1      < --->ARR11(3)  ---------->DOF2   <---------AHL20(2)      --------->AHL20(2)  <---------AHL20(2)     -   cttgggctcaagcaagtaaaaggcatcaacaatatttatatagtagtaaacgacatcaatttttttgtaccatgtataatttaacggttaaacgaaatat  4165300  Previous    Next  AGI:  At5g13120.1    Description:  peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplast precursor (CYP20-2) [Arabidopsis Thaliana] (GB:Q9ASS6;GB:Q53YK9;GB:Q8L9L5;GB:Q9FY98); similar to ROC4 (ROTAMASE CYP 4), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G62030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82436.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70095.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 4162506    to: 4164787    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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