Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ------>ZmHOX2a(1)                         <--               --------->GLK1(1)                    --------->ARR14(2)               --------->ZAT18               <---------WOX13(1)                   <---------ARR14(2)               --------->ZAT14 ------->MYB52(2)                         <---------CCA1(2)         ---------->DOF2  <---------ZAT14 -----TEIL    --------->ARR14(2)       <---------ATHB12 --------->LBD16----------->GT1            <--   ttcgtagccgaactcggattgccacaacaattccccatctaatcaaatctcaaggttcctgaaaaacccagaaagattaaaactttgagcactgttcttc  4050100                                                  ------>ZmHOX2a(1)                                              --------->ARR14(2)                                              <---------ARR14(2)                                             <---------CCA1(2)        --------->YAB1 <---------ATHB12      <---------GLK1(1)      <---------MYB52(1)--------->YAB1       --------->GLK1(1)   --------->TOE2(3) -------TOE2(3)  --------->ANAC58     <-----------GT1      --------->YAB1                <---------GLK1(2) -------TOE1(3)  --------->ANAC58<---------YAB1  --------->TOE2(3)             --------->ANAC46   aaggttccattagtaacttaagccaataactatttctaattaacaacatatcctaaatcaaacagaaccctaatctaatatactcaaaccagattagtaa  4050200                       ---------->DOF2                                                 --------->At4g35610            ---------->DOF2                                           <---------AHL20(2)          <------ZmHOX2a(2)                               ----------->GT1         --------->WOX13(1)         <---------ARR11(3)                          <---------YAB1   --------->AHL20(2) <---------REM1(1)         --------->ARR11(3) ----------->GT1      <-----------------AGL3     ----------->GT1     -----   accctagctaagatcaaagacaagggaaagagggaaaacacagacctcagaacttataatgggtagaaacatttaaatgggtataaatcagttgaagcaa  4050300                   <------ZmHOX2a(1)                   ----------->GT1                  ----------->GT1          --------->At4g35610          <---------At4g35610         ------->TEIL    --------->CCA1(2)   --------->ARR11(1)   --------->ARR11(3)      ---------->DOF2   <---------ARR11(3)     <---------AHL20(2)   <---------ARR14(2)     --------->AHL20(2)   --------->ARR14(2) --------->AHL20(2)      --------->ANAC46        <---------ZAT6 ----------->ARR10<----------ID1         <---------YAB1<------ZmHOX2a(1) ----->DOF2    ---------->DOF2    ---------->DOF2     ----------->GT1 ----------->HVH21     <------ZmHOX2a(1)   aagaagatatgtagctaaaaaggataaattaaagagaaaagtcatcatacgctgtgaggaaaaacaaatgcagtgatagagagagaagaagagaggaaga  4050400                                                                                        <---------LBD16                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                       <---------ANAC46                                                                                   <---------ANAC58                                                             <------------------------ANAC81<--------                                                       <-----------GT1     <<<<<<<<<TBF1--------->LBD16                  <----------DOF2              --------->ANAC58         <<<<<<<<<TBF1 <---------LBD16                ------>ZmHOX2a(1)              --------->ANAC46      <<<<<<<<<TBF1 <---------ANAC46      ---------->DOF2                          --------->ANAC58   <<<<<<<<<TBF1    <---------ANAC58   agacgagtcaaagtcttcctctttctctctcttcttcaaatgacaaaacacacaaattgactctcttcttcttcttcttcttcttgcttgcggggattca  4050500                                 <---------ARR14(2)                               ------>ZmHOX2a(2)                                 --------->ARR14(2)                             <---------ARR14(2)                                 <---------GLK1(2)                              --------->ARR14(2)                <---------AHL20(2)     <----------DOF2                    <---------AHL20(2)   --------->YAB1          <-----------GT1           <---------ANAC46 <---------AHL20(2)           <- -ARR14(2)      --------->AHL20(2)  *TSS  --------->YAB1              --------->AHL20(2)<-------GAMYB   aagaatgacaactcttaattttttatgtgtttccatattctctttcatatgctcttcgtgttttttgttgatataaataatcgatctgcccgttgtagat  4050600                                   ----------->GT1                               --------->ARR14(2)                        ------>ZmHOX2a(1)                 <---------At5g28300                <-----------GT1<---------ARR14(2)                --------->At4g35610                <        <----------DOF2 <----------DOF2                <---------HSFC1(2)               <---------ZAT2 ----------GT1<-----------GT1  --------->GLK1(2)       --------->HSFC1(2)               <---------At4g35610   ttaacaacttcttttttttcactgtccttttcaaatctggtttatatgcaaacttgaaacttccatgagcaaactatgcaacttattgcaagctgttttt  4050700                                                                   <---------YAB1                                                            <---------WRKY12                                                           --------->WRKY18(1)                                                          <-----------HVH21                 --------->ICU4                          --------->LBD16                 <---------YAB1                        <---------LBD16            --------->YAB1                    <-----------GT1      --------->ICU4   <----------DOF2   <---------AHL20(2)      <---------ATHB12     <---------TOE2(3) -----------GT1  ----------->GT1      <----------DOF2 ------>ZmHOX2a(1)       <------NtERF2--------->GLK1(2)   tttttctttgcaaaacataatgtttaataggtttcttctactttctaatcactctcctccggtcaaataatgtttaagttggcgaaaacagagaatttga  4050800                                                                     ------->TEIL                  <-                                                            --------->ANAC58                      ---                <---------YAB1                            ---------->DOF2                       -----   <---------ARR14(2)                         ---------->DOF2   --------->MYB52(1)       ----------->GT1   --------->GLK1(2)              <----------DOF2   --------->MYB52(1)   <-----------GT1 <----------ID1   --------->ARR14(2)          --------->ZAT6---------->DOF2--------->ANAC58         ---------->DOF2<   ctacaaatctgaagcattgttatagccttgttaacactttgtggtcagaaaggcaaacgattaagcaaacgtatttttcaattttgcaaaagagaaaaaa  4050900                                                                   --------->YAB1                                                                 --------->MYB52(1)                                                                 ------>MYB83                                                                 ------>MYB46(1)                                                                --------->MYB55(1)                                                               <---------MYB111(2)                                                               <---------MYB46(2)                                                               <---------MYB52(2)                                                               <---------MYB111(1)                                                               <---------MYB59                                                              --------->ANAC55(1)                 ---          --------->YAB1                                      --------->ANAC46              <--------  <---------WRKY12     -------->P --------->TOE2(3)           --------->ANAC55(2)          <---------YAB1  <---------WRKY38(1)  ------>MYB46(1)                        --------->ANAC58           --------->YAB1 ---------ID1          ------>MYB83------>ZmHOX2a(1)  --------->GLK1(2)         --------------->AtSPL8 ------>DAG2         <---------MYB59                  <---------ARR11(3)     <----------DOF2--------- ----->DOF2        --------->ARR11(3)         ---------->ID1  --------->ANAC58 <----------DOF2<------ -----------HVH21  <---------ARR11(3)         ---------->ARF1 <---------ANAC55(2)       <-------TEIL   aaggtcaaagaataaaaacaagacctacttgctattccttagtctcttgtctccaaaatctaacacctaacataactcgctctttgtacattcatcataa  4051000  Previous    Next  AGI:  At5g12480.1    Description:  CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7); calmodulin-dependent protein kinase/ kinase. Identical to Calcium-dependent protein kinase 7 (CPK7) [Arabidopsis Thaliana] (GB:Q38873;GB:Q56XF6); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G57530.1); similar to unnamed protein pr Range:  from: 4047518    to: 4050536    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12840.1    Description:  HAP2A (EMBRYO DEFECTIVE 2220); transcription factor. Identical to Nuclear transcription factor Y subunit A-1 (NFYA1) [Arabidopsis Thaliana] (GB:Q9LXV5;GB:O23630); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT3G20910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21904.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) Range:  from: 4050843    to: 4053537    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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