Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->HSFB2a(2)    ------>NtERF2             <---------HSFB2a(2)    --------->LBD16        <----------DOF2   --------->ANAC58       ------>ZmHOX2a(2)   --------->ANAC46      <------ZmHOX2a(2)   --------->ANAC58     --------->ARR14(2)   <---------ALFIN1     <---------ARR11(3)  --------->MYB46(3)    --------->ARR11(3) ---------ARR14(2)      <---------ARR14(2) -------->ARR14(2)      --------->AGP1 -------ETT(1)          <---------AGP1 -------->HVH21        <---------CCA1(2) --->GLK1(2)        <---------MYB52(1)                                --------->ANAC58 --->ARR14(2)    --------->RAP2.3(1)                                  --------->ANAC58 ----ARR14(2)   --------->At4g35610                                 ---------->DOF2         ------>ZmHOX2a(1) -->GLK1(1)     <---------At4g35610                          ------>ZmHOX2a(1)        ------>ZmHOX2a(1) ---GLK1(1)  --------->At4g35610  ----------->ARR10    <---------ALFIN1    --------->DEAR3(1)   ccgacccgcctcaatagcagccgctagatctttgggaagactctccaattcaatcccagactccttcaacaaaagcatcgcctcgttcctgttcctatcc  4047000                                                          --------->AtMYB61                                                        ----------->RAV1(1)                                                       --------->DEAR3(1)                    <-------                                                       <---------ALFIN1                     <-------GAMYB                                                       --------->AtMYB61                  <------NtERF2                                                      --------->MYB46(3)                  --------->RAP2.3(1)                                                    <---------ALFIN1                     ------>NtERF2                                                    --------->AtMYB61                   --------->RRTF1(3)                                                    --------->DEAR3(1)                  --------->RAP2.3(3)                                                   --------->MYB46(3)                   --------->RAP2.6(2)                                                 <---------ALFIN1                       --------->RAP2.3(2)                                                 --------->DEAR3(1)                    --------->RAP2.3(1)                                                 --------->AtMYB61                     --------->ERF1                                                --------->MYB46(3)                     --------->RRTF1(1)                                              <---------ALFIN1                         --------->ATERF1(1)                                              --------->DEAR3(1)                      <---------ATERF1(1)        <---------At5g28300                   --------->AtMYB61                   --------->YAB1      ----------->HVH21                      --------->MYB46(3)                  <---------YAB1     <-----------HVH21                      <xxxxxxxxxxxxxxxxsmallRNA(i)  <-------GAMYB--------->DEAR3(2)     <-----------TGA1                       ------>NtERF2--------->MYB46(3)<---------MYB52(1)--------    --------->O2            <---------ICU4  <---------ATERF1(1)          <XXXXXXXXXXXXXXXXXXXXMIR845A    --------->bZIP60(2)    <---------YAB1  --------->ANAC46            ------>ZmHOX2a(1)--------->DEAR3(1)    --------->ANAC46     <---------ICU4    --------->DEAR3(1)    <---------ARR11(3)  --------->ARR14(2)   ------>ZmHOX2a(1)    <---------ATHB12   <---------ALFIN1      --------->ARR11(3)  <---------ARR14(2)   ctgtcctcgtcaccgtgtccatctccatcattcttacctccatcgccaccaccaccaccaccactaagacctcctccgttgttatcagagccgccgttac  4047100                                     --------->At5g28300                                     <-------GAMYB                                    ----------->GT1                                    <---------DEAR3(2)                                    <---------MYB46(3)                             --------->At4g35610       ----------->GT1             <---------DEAR3(1)                           <------ZmHOX2a(1)     <---------At4g35610           <---------ANAC46                       ---------->DOF2  ---------->DOF2               --------->ANAC46     <----------DOF2   <---------MYB52(1) --MYB52(1)                   <---------ALFIN1  <---------WOX13(1)    --------->At5g28300          <- ->DOF5.7(2)                 <-------TEIL---------->DOF2             ----------->GT1         --------   cacttgaagcggataaaacaggggtaataggtacacggcggttaaaagagattgactttgcagagattacaccgttaaaagaggaagatgaagagagtct  4047200                                                      --------->ALFIN1                      <-----------HVH21             <---------ANAC58                     --------->TGA1a                <---------ANAC58                     --------->bZIP60(2)            <------MYB46(1)                     --------->O2                   <---------ANAC46             --------->ALFIN1                       <------MYB83            <-----------HVH21                       <---------ANAC55(1)           --------->O2                            <---------DEAR3(1) -----ZmHOX2a(1) ------>NtERF2             --------->At4g35610 ->GLK1(2) <---------O2                    <---------At4g35610              <------ZmHOX2a(1)   aggaaacgaagcgatgtgaggccatgtcagattggattcagagatagctgtgttcggtgttggaacacagaagaagcaggaagcgattgccattgatgct  4047300                         <----------DOF2                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      --------->AGP1                      <---------ARR11(3)                      --------->ARR11(3)                     --------->GLK1(1)                                                   --------->SPL7                     <---------GLK1(1)                                                  <------NtERF2                ---------->DOF2                                                         ------>NtERF2            --------->ANAC58                                                           <---------SPL7            <----------ID1                                                    <------MYB83 --------->ATHB12            --------->ANAC58                   ---------->DOF2                <------MYB46(1)      <-   acagacagcgagaaacgaaaaagagatctttgaaactggaactgaaactgaaagtcgtctggttcagtctctctctctgtaggtagaggcggacgattga  4047400                          --------->ARR11(3)                          <---------ARR11(3)             <---------At4g35610                                               <---------MYB59      <             <------NtERF2--------->GLK1(2)                                  ------->TEIL          <-             --------->At4g35610              <---------TOE1(3)     <---------ARR14(2)             --           <---------WRKY38(1)         *TSS   <---------TOE2(3)     --------->ARR11(3)             --           <---------WRKY12        <---------LBD16                 <---------CCA1(2)          -------   --------->ALFIN1      <---------GLK1(2)<----------DOF2     <---------AHL20(2)              ------- --------ZAT14    ---------->DOF2<----------DOF2      <-----------GT1  <-----------RAV1(1)    <------   gagaagtggagagtcagcgaaaaagaagaatctttctttcggagttttaagggttttttcttattttatatatctggtggacctcactatcgagagaatc  4047500        <---------CCA1(2)       ------->MYC3       <-------MYC3       ------->MYC2       <-------MYC2      <---------ANAC58      <---------ANAC46      <------NtERF2      <---------ANAC58     ------>NtERF2    <---------ANAC46    <---------ANAC58    <---------ANAC58 <-----------RAV1(1) ------->GAMYB ------------AtMYB77         --------->ANAC46--------->CCA1(2)        <---------ARR14(2) --------ZAT2           --------->At4g35610 --------->AHL20(1)        ------->TEIL ------->ZAT2        --------->HSFB2a(1)   --------->AHL20(2)         --------->ARR14(2) --------->RAV1(2)   --------->HSFC1(2)----------->TBP                <---------ARR11(1) -->GLK1(2)          <---------HSFC1(2)<---------YAB1                <---------CCA1(2)<---------GLK1(2) -->ARR14(2)     --------->ANAC46      --------->AHL20(2) --------->YAB1      <---------GLK1(2) ---ARR14(2)<----------DOF2  --------->REM1(1)      --------->YAB1   <---------ARR14(1)   caactggcgcgtgtctttcacgaagcatcttacaccatcttataaatatatgaattacaatcacaaaactcgtatctttggaatctcagaaacttgttcg  4047600                                                                                 ------>MYB83    <---           --------->YAB1                                                      --------->AtMYB61 <---          <---------ATHB12                                                 --------->ANAC58    <-----        --------->WOX13(1)                                                 --------->ANAC58<--------HAHB4      <---------YAB1                                                 --------->MYB46(3)    <---------ICU4     --------->TOE2(3)                                              ------>MYB46(1)        --------->YAB1    --------->YAB1                                                  --------->SPL7<---------ATHB12 --    <---------ICU4                <----------DOF2                   ------>MYB83 ------>MYB46(1) <---   <---------YAB1              --------->ARR11(3)                 --------->TOE2(2)       <---------YAB1 --------->YAB1                <---------ARR11(3)---------->DOF2  --------->TOE1(2)       <---------ATHB12   acatcatcatcaatcacatcgctgtccattgaagaacttttcaaacaaattgaaagccctaaacaaaacctacgaccacgaccaatctttctatcattac  4047700                                                                          <---------At4g35610                                                                          <---------ZAT2                                                                          --------->At4g35610            <---------HSFB2a(2)                                        <---------At4g35610            --------->HSFB2a(2)                                        --------->At4g35610         <---------YAB1                                             <---------At4g35610---------->DOF2 ------ANAC46                                              <<<<<<<<<TBF1 <-----------RAV1(1) ------ANAC58                                            <------------------------ANAC81 ----At5g28300                  <----------DOF2       <----------DOF2 <-----------RAV1(1)   --------- --------->GT1               <-----------GT1 ----------->TGA1    <<<<<<<<<TBF1 <----------DOF2 ------ANAC58      <---------YAB1            ----------->HVH21<<<<<<<<<TBF1    <---------DAG2<-------TEIL   cgtgttaaatgcttatagaacataatagttatttctttttgacaatgctgacgcttctttcttcttcttcttctgctgctgctttttcaaaaagattcaa  4047800                                                                                                    -                                                                                                  <--                                                                                           --------->ARR14(2)                                                                                           <---------ZAT14                                            --------->MYB46(3)                         --------->LBD16                                           ------->TEIL                               --------->LBD16                  <---------TOE1(2)       <-----------GT1                            --------->HSFB2a(2)            <----------DOF2             <---------MYB52(2)                           <---------HSFB2a(2)           <---------ANAC58             <---------ATHB12                         <----------DOF2  <-- >CCA1(2)  <---------ANAC58    <---------YAB1                                 ------->TEIL <---------ARR14(2)   acttttgtctcttgctttcttaggtctcgccttctaattgcaatgaaccatctctcattaacttgaggcttaaactgttgaatctttcccgagaatactg  4047900  Previous    Next  AGI:  At5g12470.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40400.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21888.1) Range:  from: 4044625    to: 4047439    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12480.1    Description:  CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7); calmodulin-dependent protein kinase/ kinase. Identical to Calcium-dependent protein kinase 7 (CPK7) [Arabidopsis Thaliana] (GB:Q38873;GB:Q56XF6); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G57530.1); similar to unnamed protein pr Range:  from: 4047518    to: 4050536    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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