Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ------>ZmHOX2a(2)                                                  --------->GLK1(1)                                                  <------ZmHOX2a(2)                                                 --------->ARR11(3)                                                 <-----------ARR10              ------>ZmHOX2a(2)                  <---------ARR11(3)            --------->ARR11(3)                   <---------ARR14(2)            <---------ARR11(3)                   <---------AGP1            <---------ARR14(2)                   --------->ARR14(2)            --------->ARR14(2)                   --------->AGP1        <---------At4g35610                     <---------CCA1(2)                                  --        --------->At4g35610                   --------->HSFB2a(2)                   ------>ZmHOX2a(2)       --------->GLK1(2)            --------->At4g35610              ----------->RAV1(1)   <-------TEIL     ---------->DOF2                <---------At4g35610            --------->ZAT14<---------AGP1  <--   gaaaccaagaagctgatcttccatgtaatgtctggctctgctcatcatccagatctcacatttgagaactgcagcatgagcatcgatctgagttacatcg  3979400                                                                                                    -                                   <----------DOF2                                                  <                                  --------->AGP1                                                <----                                 --------->ZAT2                                               <------                                 <---------ZAT2                                               <------                                 --------->At4g35610                  <------ZmHOX2a(1)       <------      --------->GLK1(2)          <---------At4g35610             <-----------TGA1       <---------ARR14(2) ------->YAB1                   ------>NtERF2       <---------ANAC46 --------->ICU4     --------->ARR14(2) ----ZmHOX2a(2)             <-----------GT1      <-----------RAV1(1) <---------YAB1     --------->GLK1(2)   atcataagcttctggttgaattcagggtttttgccagctctatggatgattctggtggagatggtatcgtcaggattgtatgtgagagagaatttggcgt  3979500                                          <---------ANAC46                                      <---------ANAC58                                            --- -------->O2                          <---------ANAC46                                      --------- ---------O2            <-----------RAV1(1)<-------GAMYB                            <---------MYB46(3) --NtERF2              --------->ARR11(3) <---------ANAC58           --------->TOE1(2)      <-------- ---ANAC58            <---------At4g35610 <---------ANAC58          ----------->RAV1(2) <---------At4g35610 ---ANAC46         <-------TEIL       <---------ANAC58       --------->HSFB2a(2)   <---------AtMYB61 ---ANAC58 <---------YAB1       <---------TOE2(3)     <-------TEIL  --------->At4g35610 --------->At4g35610   agacgtcttggttatcgtagatgcagatgttgttgatgtttcttgcgttgtgaacatacacttggagaacacctgagaagccttggtggtagcagaaccc  3979600           <---------ANAC58           <---------ANAC58                                                                    ------    --------->At4g35610                               ---------->DOF2                        <------- --------->At4g35610                                <---------YAB1                           <------- ------->DOF2           --------->GLK1(2)        --------->ICU4                        ----------->GT1 >ARR14(2)<---------HSFC1(2)               <---------------------WRI1       --------->DAG2  <-------- -ARR14(2)--------->HSFC1(2)           --------->MYB52(1) ---------->DOF2  ---------->DOF2  <--------   agaagcagaagaagcttgtttcagagattccatagaagaaaaaacagagaaattatcaaagaaagagagaaccaagataaagctgtagatggtttaacgt  3979700                                    ---------->DOF2                                 --------------->AGL15                                 --------->TOE1(3)                                              *TSS                                 --------->TOE2(3)                                              -----                                 <---------------AGL15                                        <------                           --------->YAB1                                           <----------DOF2 --->TOE2(3)              >>>>>>>>>MYB98                                           <---------ANAC58 --TOE2(3)             --------->At5g28300                              --------->ANAC58  <----------DOF2 --TOE1(3)            ----------->GT1           <---------YAB1      <---------TOE2(3)    <---------ANAC58 ---GT1      --------->At4g35610----------------->AGL1         <---------ZAT6      <---------ANAC58 -DOF5.7(2)  <---------At4g35610----------------->AG  ---------->DOF2   --------->ANAC58 <---------ANAC58   ttaaaatgagtctgaagctgaacacagtaacataacctcaaagggaagtcatgagagaaagagaagtgttaatgaagcaagagtagcttttgctttgagg  3979800                                                                                                  <--         <------------CBF                                                                       <----     <------ZmHOX2a(1)                        --------->GLK1(2)          --------->YAB1         -----  <-----------RAV1(2)           <---------MYB46(3)   <----------ID1    --------->ARR11(3)      <-----  <---------LBD16              <---------AtMYB61--------->ATHB12       <---------ARR11(3)   --------- ------->CBF                   --------->ALFIN1------------>CBF  >>>>>>>>>GATA-1    ---------->DOF2 ---TOE2(3)            <------ZmHOX2a(1)  --------->YAB1       ----------->GT1----------->GT1  ------   caattcaggagcattgaatggaagaggaatagagtggttgagaataagaatcaatggaacaaaaatagataaatatcatgaagataaaaagaacattatg  3979900                                               --------->ANAC58                                            --------->MYB46(3)                                      <-----------ARR10     --------->YAB1                   <---------ARR11(3)  ---------->DOF2                     --------->ARR11(3) -------YAB1     ---------->DOF2     --------->CCA1(1) -----ICU4    --------->YAB1         --------->RVE1(1) ---->YAB1   <---------YAB1    ----------->GT1 --------->ANAC46 ----YAB1  <---------ICU4      <---------YAB1  --------->ANAC58                       ------->GAMYB >ICU4    --------->ICU4    --------->ICU4<-----------GT1                           -------->P      - --->ICU4 <---------YAB1  <---------At4g35610------->GAMYB<---------ATHB12      --------->TOE2(3) <--   atgacaaagatgatgattataaagactgagatgatgaaaatatctaaccacacaattccaatggagcattttcatcaaacaacatcaacccaattcagac  3980000                                                                          --------->MYB52(1)                                                                       <------MYB46(1)                                                         <---------ARR11(3)                                                <--------ATHB1         <------MYB83                                                <---------ICU4        --------->MYB46(2)                                                -------->HAHB4        --------->MYB111(2)                             <---------ARR11(3) --------->ATHB12      --------->MYB59           ------->TEIL  <---------WRKY38(1)   <---------ATHB12       --------->MYB111(1) <---------TOE2(3)       <---------WRKY45      --------->ICU4        <---------MYB55(1)            -- -------->MYB52(1)       <---------WRKY12      <---------YAB1        <--------P                    <- -------MYB52(2)        --------->WRKY18(1)   <---------TOE2(3)    <---------ANAC46 <---------At4g35610   actaacgaagatgaacgtttatattggtcaacatatttgacttagactaatgattccatggtcttaatggggtaggtaagggattgagatgtctagtttt  3980100                                                                 --------->MYB46(3)                                                                --------->ANAC58                                                                ------>MYB46(1)                                                              --------->DEAR3(1)             ---------->DOF2                                  --------->AtMYB61          <---------AHL20(2)                                  <---------ALFIN1          --------->AHL20(2)                             <-----------GT1      --------->AHL20(1)                        <-------GAMYB--------->ANAC46      <---------AHL20(1)                       <---------ANAC58 ------>MYB83      --------->AHL20(2)                       <---------ANAC46 --------->ANAC46               ------      <---------AHL20(2)                  <---------AtLEC2 --------->ANAC46                  --------     --------->AHL20(2)  <---------YAB1 <---------YAB1  --------->ZAT14                      -------- <---------YAB1--------->DAG2   <----------DOF2<---------ANAC58 --------->ANAC58             -------- ------->At4g35610      <---------AHL20(2)<---------ANAC58 --------->ZAT6                    -------- --------At4g35610      --------->AHL20(2)<---------ANAC58 <-----------GT1   ----------->RAV1(1)   ctgatgaataaattaaaaaggtatgttttaatagctttgattttgcttggcgttgcagtttacaccacccaaaatttggccacagtcaattgcagacccc  3980200                         --------->TOE2(3)                   <---------ICU4                   --------->YAB1                   --------->ATHB12                  <---------YAB1                  --------->ICU4                                                               ------                <---------ICU4                                                                 ------                --------->YAB1                                                                 ------               <---------YAB1                                                   --------->GLK1(2)       ------>MYB83<--------HAHB4                                               <---------ARR11(3) --->ZAT18   <---------ICU4                                                     --------->ARR11(3) ->ANAC58    --------->YAB1   --------->MYB46(3)                --------->ANAC46<---------ARR14(2) ->PCF2------>MYB46(1)   --------->TOE1(3)                      --------->bZIP60(2)           ------- ->ANAC58 --------->YAB1<---------YAB1             <---------YAB1  --------->YAB1         --------->YAB1 ->ANAC46<---------ATHB12--------->YAB1--------->YAB1         <---------ALFIN1  --------->ARR14(2)   actaaaacccactcatcatcatcattaccataaccacttaatcttcattccatatgatcaattcccacatcataagcgagagtatctctcactcatcaag  3980300  Previous    Next  AGI:  At5g12300.1    Description:  C2 domain-containing protein. similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55530.2); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55530.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55530.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO16853.1); contains InterPro domain C2 calcium-dependent membrane targeting (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973) Range:  from: 3978314    to: 3979796    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12310.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G19430.1); similar to Os01g0954400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045432.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16852.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 3980227    to: 3982443    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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