Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC58   --------------->AGL15   <---------------AGL15  <---------ANAC58                              <---------AHL20(2)  <---------ANAC58                        <----------DOF2       <---------ARR14(2)  <---------ANAC46                       <---------ICU4         <---------ARR11(3) ------ICU4 ---------->DOF2           --------->YAB1            --------->ARR14(2) ----->ATHB12                        <---------YAB1  ----------->RAV1(1) -----YAB1--------->ANAC58          --------->AHL20(2)         <------ZmHOX2a(1) --ZmHOX2a(2)                       <---------AHL20(2)        ----------->GT1               <-------- ----ARR11(3)                      --------->YAB1 <-----------GT1--------->CCA1(2) --------->ICU4 --->ARR11(3) ----------->GT1     <---------YAB1--------->AHL20(2)          <-----------RAV1(2)  <---   cattgcttaaacaagaaagaaaaaaactcatcgcttattataatctttatttaaacaacacaagaggatatatgtttctcaggtagtaattgttcttata  3923600              --------->ARR14(2)              --------->ARR11(3)              --------->GLK1(2)              <---------ARR11(3)    <---------HSFC1(1)    --------->HSFB2a(2)                --------->ANAC58    <---------HSFB2a(2)    --------->ZAT6    ----------->HVH21 --------->GLK1(2)     <---------ATHB12--------->ANAC58                               ------>ZmHOX2a(1) -YAB1        <---------ARR14(3)  --------->ZAT14                            --------->YAB1 --------GT1  --------->ARR14(3)  <---------ZAT14           <---------GLK1(2)<-----------GT1  <------   aacattctggaaacaaaatcttcaaatcaacactagtacagaagcaaatgacacaatccctaaattctcaaacaaaaaataacaattcctgatgagaatg  3923700                                                                        <---------GLK1(2)                                                                   ------>MYB83                                                                   --------->MYB52(1)                                                                   ------>MYB46(1)                                                                 ------->GAMYB                                                                 <---------MYB59                                                                 --------->AtMYB61                                                                --------->MYB46(3)                                                               -------->P      --------->YAB1<------ZmHOX2a(1)                                                              --------->WOX13(1)            ---------                                                             --------->MYB46(3)<------ZmHOX2a(1)                                                          --------->YAB1<---------ARR11(3)  ---------       <---------YAB1----------->GT1                     =============================HOX2a_HOX2a ---KAN4(2)     --------->TOE1(2)                        <------ZmHOX2a(2)   <---------TOE2(3) ------   acctatatttcgatagatcgaacgagaaaaatcagcgatttgctaagagataaacttcgatcatcaaccaaacagattttaggataatgaaggcaggaaa  3923800                                                                                  <---------AtLEC2                                                                      --------->ATHB12                --------->TOE2(1)                                    <------ZmHOX2a(2) >ANAC58        --------->TOE1(1)      --------->At4g35610           <---------YAB1 >ANAC58<---------------AtSPL8    --------->ETT(2)                  <---------ARR11(3) ---->DOF2  --------->SPL7 <---------YAB1     --------->TOE1(2)     --------->ARR11(3)      ---------   agatgggagaatggtacctcgttcttgttatgctcatcgacagcgaaacgagcgagactctcgacttgaagatcattagcatttgcatcaatatcgcgaa  3923900                             ------>NtERF2                            --------->ANAC58                         --------->ARR14(2)                  <---------ANAC58                                                     ---------->DOF2                ==================HOX2a_HOX2a                                      <---------ARR14(2)                ------>ZmHOX2a(1)      <---------CCA1(2)                           <---------ARR11(1)          <---------MYB46(3)--------->ANAC46                                       --------->ARR14(2)          --------->HSFB2a(1)--------->LBD16                                       ------->TEIL          <---------KAN4(1)------>ZmHOX2a(2)    <---------DAG2                    <---------ARR14(1)    ------>NtERF2 <---------ANAC46   <---------ANAC58                             <---------CCA1(2)   --------->DEAR3(1)    <---------ARR14(2)<----------DOF2                      <---------ANAC58   ----------->HVH21<---------MYB46(3) ---------->ID1                           <---------ANAC58 ------>ZmHOX2a(1)<---------ANAC58   <---------ANAC58<---------YAB1             <---------ANAC55(2) =================================HOX2a_HOX2a   <----------DOF2            <---------YAB1 >HSFB2a(2)--------->KAN4(2)--------->ANAC58 <-----------GT1   --------->TOE2(3)--------->ANAC55(2)   ctcctccgacgattgttcctgcttgttgatccgccattttcgtctctttacttttctgatttttatctcaaatgtttttgattcgtatctaaagtctaaa  3924000                                                                               --------->DAG2                                                                             ---------->DOF2                                                                    --------->LBD16                                                                   --------->HSFB2a(2)                                                                   <---------HSFB2a(2)                                                                   --------->ANAC55(2)          <---------YAB1                                          <---------LBD16    <---------YAB1       <---------YAB1                    <-----------GT1   <--------ATHB1   <---------AHL20(2)     <---------ZAT6                <----------DOF2      --------->YAB1  --------->ICU4            --- ---------->DOF2        *TSS---------->DOF2 <----------DOF2<---------ICU4--------->YAB1    <---------   acccaaagtgttattgttatatatagagattaaagcgcgtttttttctttcccttcaagaataattcttccggaataataaaaggttatgactcattgta  3924100                                                             <---------ATHB12                                                             --------->MYB46(3)                                                            ------>MYB83                                                            ------>MYB46(1)                                                            -------->P                    <-----------GT1                     <------NtERF2           --------->ARR14(2)                         <---------RAP2.6(2)           --------->GLK1(2)                          --------->ETT(1)           <---------ARR14(2)                         <---------DREB2C(2)           <---------ARR11(3)                        --------->DDF1           <-----------ARR10                         --------->RAP2.6(3)           --------->ARR11(3)                       <-----------HVH21                             ---          <---------ARR14(1)                       <-----------RAV1(1)                            --- ------>ZAT6  <----------DOF2                  <---------AHL20(2) <---------AHL20(2)              --- ---CBF   <---------GLK1(2)  <----------DOF2   --------->AHL20(2) --------->AHL20(2)      <------ZmHOX2a(1)   gcactaactagagaatctttttttacttcttcttttcaataaactgaatttatatgtcggccaaccatttaaaatgtagaaacaaaaacagaggaaatac  3924200                                                                                                   --                                                                                                   --                                                                                   --------->ARR11(3)                                                                                   <---------AHL20(1)                                                                                   --------->AHL20(1)        <-----------GT1                                                           --------->AHL20(2)    <----------DOF2                                                          --------->At5g28300<----    <---------DAG2                                    --------->ANAC58      ----------->GT1 <<<<<<<<< ------>ANAC58                              --------->ANAC58             <---------ANAC46  <------MYB83 ------>ANAC58            ---------->DOF2   --------->ANAC58             <---------ANAC58  <------MYB46(1) ------>ANAC46 --------->TOE2(3)--------->ZAT6        --------->ANAC58   <---------ANAC58  ----------   acacaactttttacaaacctcactcacataaatcacactaacaacgaagcaagagcaaacaatttctcatcaatttcgtggtaaatatatagttggttta  3924300                                           <----------DOF2                              --------->ZAT18                              <---------REM1(2)                              --------->ZAT14                              <---------At4g35610                              --------->At4g35610                                         <---------MYB59 ------->TOE1(3)  --------->YAB1     <---------TGA1a                               ---------->DOF2 ------->TOE2(3)--------->ANAC58     =================bZIP_DOF                   --------->HSFB2a(2) -------GT1     --------->ANAC46     <---------O2<-----------GT1           --------->ARR11(3) <MYB80         --------->ANAC58  --------->DEAR3(1)    <-----------GT1    <---------ARR11(3) ->GT1      <-----------GT1   <---------ZAT14  <----------DOF2 <---------AHL20(2)<---------HSFB2a(2)   accttgaaccggttttacaagcatgaagagtctgcacagacgagactttctttacatttttctatttttttggacaagagcttctcaaagagcctaattc  3924400                                                               --------->GLK1(2)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                               ------->TEIL                                                            <---------YAB1                            >>>>>>>>>TBF1               --------->ARR11(3)                   <---------ZAT14                      <---------ARR11(3)               <---------DEAR3(1)                       --------->ARR14(2)               ============================HOX2a_HOX2a--------->ICU4               ------>ZmHOX2a(2)                   --------->WRKY18(1)                              -             --------->ARR14(2)                 <---------TOE2(3)      --------->HSFB2a(2)  <--------             --------->GLK1(2)          --------->TOE2(3)--------->GLK1(2)                  <--------             <---------ARR14(2)      <---------ARR14(2) <---------ARR14(2)                  <--------            <------ZmHOX2a(1)        --------->ARR14(2) <---------GLK1(2)       ----------->HVH21   <  <---------ANAC46 --------->ZAT14  <------ZmHOX2a(1) ----------->ARR10<---------HSFB2a(2) --------->MYB52(2)   catggtggagaagaggatcggtgcagagaagaagaagaggaaccatagttgaggtcaagattctgaatctgttccataagttgtgaccgtcgttccttga  3924500  Previous    Next  AGI:  At5g12140.1    Description:  ATCYS1 (A. THALIANA CYSTATIN-1); cysteine protease inhibitor. Identical to Cysteine proteinase inhibitor 1 (CYS1) [Arabidopsis Thaliana] (GB:Q945Q1;GB:O48589); similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT3G12490.2); similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT3G12490.1); similar to phytocystatin [Brassica rapa subsp. pekinensis] (GB:AAQ03209.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003 Range:  from: 3922910    to: 3924024    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12150.1    Description:  pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein. similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19390.2); similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19390.1); similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19390.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO16863.1); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza Range:  from: 3924127    to: 3930306    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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