Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                            <--------                                                                                           <---------MYB52(1)           <---------MYB46(3)                      <---------AHL20(1)                    <-----------RAV1(1) -----ANAC58                                       --------->ARR11(3)                    <---------MYB46(3) -----ANAC55(1)                            <------ZmHOX2a(1)    ------>MYB83<---------ARR14(2)<------ ---->ANAC55(2)                         <---------HSFB2a(2)     ------>MYB46(1)        --------->At4g35610 -----ANAC58                 --------->ANAC58      --------->AHL20(1)       --------->ARR14(2)<------ -----ANAC55(2)   <-----------RAV1(2)   --------->HSFB2a(2)  --------->HSFB2a(1)       <---------At4g35610 -----GT1<---------MYB52(1)  --------->ANAC58 ----------->GT1<---------HSFB2a(1)   --------->TOE2(3)   gagtcttctcggtttgttcttcaggggcttcaagcatgtcttcgaggattgaaaatattggaaaccttccaaactccaaatccattcttagctgttgtgt  3884700                 <---------DAG2                 <----------DOF2         <----------DOF2    <---------ANAC58   <----------DOF2  <---------YAB1         <---------AHL20(2)    <---------ANAC58 <------------------------ANAC81          --------->AHL20(2)            --------- <----------DOF2<---------ANAC58      *TSS                --------->ICU4                --------->HSFC1(1) ---------GT1   <---------ANAC58 <---------WOX13(1)      ----------->GT1                --------->HSFB2a(2) -ANAC46<---------ANAC58       --------->ATHB12        ---------->DOF2                  >>>>>>>ZML2 ---ZAT6<---------ANAC58   <<<<<<<<<<MYB80       <---------REM1(1)                      <---------HSFC1(1) ---ANAC46     ---------->ID1 <---------YAB1    <---------TOE2(3)                       <---------HSFB2a(2)   taactttcttgcttcttggctttttctttggtttgattgattttgattttgatgtaagaaagtattaaatagaagttgagttggatagttctagagcaat  3884800                                                     --------->HSFC1(1)                                                     <---------HSFC1(1)                                                     <---------HSFB2a(2)                                                     --------->HSFB2a(2)       --------->ALFIN1<-----                                               <---------TOE2(3)         <---------HSFB2a(2)   <-----                        <---------HSFB2a(2)    <---------TOE1(3)     <-------GAMYB             ------                        --------->HSFB2a(2)--------->HSFB2a(2)      <---------MYB46(3)   <---------CCA1(1) --->CBF <------------CBF        ---------->DOF2 --------->TOE1(2)  ------>ZmHOX2a(2) ----------->GT1   gtagagagagcgattgtttcggtgttatagaacttaaaagcgcttctctaacgttcgagaaacgtcttgatcgttggagaagtgtagatggatatttcta  3884900                                                                                                    <                                                                                                   <-            --------->DAG2 --------->WRKY18(1)                                                    <--           ---------->DOF2 <---------MYB52(1)                                               <--------  ------->TEIL            <-----------HVH21                                              ----------->GT1 ----HSFB2a(2)          --------->MYB59                                                 ----------->GT1 ----HSFC1(1)       --------->ATHB12                                                  <------ZmHOX2a(1) --->HSFB2a(2)    <---------WOX13(1)                                                <---------TOE2(3)   gacgaatgtagagaaaagcgattgattcggtcaggcccaagaccaattcgttttcaggcccatatgtattctgttttggatttagtaaggatgttaaatt  3885000        <---------SPL7       <------MYB83       <------MYB46(1)      <---------------AtSPL8      --------------->AtSPL8      <---------------AtSPL3      --------->MYB46(2)      --------->MYB59      <---------MYB46(3)                            <-----------HVH21      --------->MYB111(1)                  <---------WOX13(1)      <---------AtMYB61                    XXXXXXXXXXXXXXXXXXXX>MIR170      --------------->AtSPL3               XXXXXXXXXXXXXXXXXXXX>MIR171A                          <---    <---------MYB52(1)                    <------------CBF          --------->ANAC58      <----------  --------->LBD16                        --------->ATHB12           --------->ANAC46 --------->YAB1 ---------LBD16                       <------------CBF       <-------GAMYB        <---------ARR14(2) ----------------AGL1               <---------AHL20(2)      ----------->GT1       --------->ARR14(2) ---------GT1                      --------->AHL20(2)------------>CBF*TSS        <------ZmHOX2a(1)<-- -AHL20(2)--------->SPL7    <---------ANAC46      --------->LBD16   --------->ANAC58<-------TEIL <---   tatccggtttggtacgatttcattcgaatttagtgtataaaattgattgaaccgcgtcaatacggttgaaacgcaaacgcagaggattcatgagtcatgg  3885100                               ------>MYB46(1)                               ------>MYB83                               -------->P                              --------->MYB55(1)                             <---------MYB111(2)                             <---------MYB46(2)    <---------ZAT14      --------->At4g35610    <---------MYB111(1)   ---------->DOF2      <---------At4g35610    <---------MYB59 --------->TOE1(1)      <---------ANAC46     ------->TEIL  <---------YAB1 ------ANAC58              -------->P   <---------ARR11(3)                     <-----------HVH21 -HVH21                 --------->At4g35610 --------->At4g35610                <-----------TGA1 --------DOF2       --------->ARR11(3)  --------->ARR11(3)     <---------bZIP60(1) ------ANAC58       <---------ARR11(3) --------->YAB1----------->GT1<---------At4g35610   cttttgtgaggtgaagtatcaatatcatctacctacctatatgatcatcggactaaagtgaaatgaagtcagcaatttcatcgtcactcttcttcaattc  3885200                                                                                 --------->ZAT6             --------->TOE2(3)                                                  <------ZmHOX2a(2)             --------->TOE1(3)                                          --------->LBD16   <---------ALFIN1          <-----------GT1                               ------>ZmHOX2a(1)   <------ZmHOX2a(2)  --------->GLK1(2)                                     ===============================HOX2a_HOX2a <-  <---------ARR11(3)           <----------DOF2          ===========================HOX2a_HOX2a     --  --------->ARR11(3)   <----------DOF2       <-----------ARR10          --------->HSFB2a(2)     ----- <---------GLK1(2)   ------>ZmHOX2a(1)      <---------CCA1(2)     --------->ARR11(3)  <-----------HVH21   gaagaatcttttaaaccctaatcctctttctcgcttcatttctctcaaatctaacttcctccctaaattatctccgagatcgatcactagtcacaccttg  3885300                                 XXXXXXXXXXXXXXXXXXXX>MIR408                               <-------TEIL                              ================HOX2a_HOX2a                              <------ZmHOX2a(2)                             --------->ARR14(2)                             --------->AGP1                             <---------ARR11(3)                                 <---------ZAT18                             <---------ARR14(2)                                 --------->ZAT18                             --------->ARR11(3)                               <---------GLK1(1)                       <----------DOF2           <---------ANAC58            <---------ZAT6                 --------->AtMYB61     ------>ZmHOX2a(1)                --------->STY1(2)                 --------->TOE1(3) <---------ARR14(2)                   <---------STY1(2) --------At4g35610   <---------At4g35610         <---------ANAC58      --------->ANAC58 ------->At4g35610   --------->At4g35610    <---------AtLEC2           --------->ANAC46        ------ ----->DOF2      --------->TOE2(3) --------->ARR14(2)   <----------DOF2--------->ANAC58<---------At4g35610   aagctcccatcttcgtcaacctcagctttaagatccatttcctcttccatggcttcttctttcaaccctgaacaagctagagttccctctgctcttcctc  3885400             <---------WRKY18(1)            --------->WRKY12            --------->WRKY38(1)           <---------MYB52(1)          <---------At4g35610          --------->At4g35610          <-------GAMYB                                                 --------->ATHB12       ------>ZmHOX2a(1)                                               <---------YAB1      <---------ALFIN1                                              <----------DOF2   --------->ARR14(2)                                      --------->ATHB12   <---------ARR14(2)                                      <---------ICU4  --------->At4g35610            <----------DOF2           --------->YAB1  <---------At4g35610   <---------At4g35610                <--------HAHB4  <---------ZAT2        --------->At4g35610               <---------ATHB12  --------->ATHB12  --------->ZAT2       --------->MYB59   <-----------GT1--------->WOX13(1)<---------WOX13(1) >ZmHOX2a(1)--------->WRKY45 <----------DOF2 <----------DOF2      <---------At4g35610        --------   tcccagctcctccgttgaccaaagttagctcctttcttttcatttacctttgggttttcaatcatttcagcttttgattgatttcttcgttccatgggta  3885500                                                                                       --------->HSFC1(2)                                         ----------->HVH21                             --------->At4g35610                                       <---------At4g35610                --------->ANAC58                                 <-----------HVH21       <---------ARR11(3)            <---------At4g35610                          <---------At4g35610   --------->DAG2            --------->ANAC58      -----                          --------->At4g35610  ---------->DOF2          XXXXXXXXXXXXXXXXXXXX>MIR2937                      <-----------HVH21--------->At4g35610              ---------->DOF2<---------HSFC1(2) --->GT1         <---------ARR14(2)  --------->REM1(1)   --------->ARR11(3)           --------->GLK1(2)   attttgtagttcaacatcggattgtgtcagctatctgttacatctgacaaaaagagaaacatctctcatgctaaaaaagccattgaagaagctgcttcta  3885600  Previous    Next  AGI:  At5g12030.1    Description:  AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A). similar to HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G12020.1); similar to 17.6 kDa class II heat shock protein [Brassica rapa] (GB:ABV89637.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20 (InterPro:IPR002068) Range:  from: 3884108    to: 3884738    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12040.1    Description:  carbon-nitrogen hydrolase family protein. similar to nitrilase, putative [Arabidopsis thaliana] (TAIR:AT4G08790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43865.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) Range:  from: 3885069    to: 3888078    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version