Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <XXXXXXXXXXXXXXXXXXXXMIR161.1                                                                   <---------LBD16                                                                 <---------ARR14(2)                                                                <---------HSFB2a(1)           <------                                                                --------->HSFB2a(1)         <--------                                                                <---------HSFC1(2)          <--------                                                                --------->HSFC1(2)         --------->DEAR3(1)                                                          <------ZmHOX2a(1)             --------->ANAC46              --------->ANAC58                          --------->ALFIN1               ------->GAMYB              --------->ANAC58                         <------ZmHOX2a(1)              <---------ALFIN1 -------->YAB1--------->ANAC46--------->ZAT14<----------DOF2 <------ZmHOX2a(1)  --------------------- -----ZmHOX2a(2)   <---------ANAC46 <----------DOF2 <-----------RAV1(2)         <----------DOF2   gatcacaaacaaactcaagcgacttgaacttgtatagtctttggtttctttggctcaggaggaggaagtttcggaatagtcactttcaacacaccgtcat  3884300             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           --------->AGP1           --------->ARR11(3)           <---------ARR14(3)           <---------ARR11(3)           --------->ARR14(2)           --------->ARR14(3)           <---------ARR14(2)     --------->LBD16     --------->At4g35610    --------->RAP2.6(2)    --------->DEAR3(1)                --------->MYB52(1)    ----------->RAV1(1)            <---------ANAC55(2) --------->ANAC58                  --------->At4g35610 --------->ANAC46     <---------ARR14(2) --------->ANAC58     --------->ARR14(2)     --------->HSFC1(2) ---ICU4  --------->GLK1(1)        --------->ANAC55(2)                  ------>ZmHOX2a(1) ---TGA1  <---------GLK1(1) <---------------AGL15                      <---------ALFIN1 ---HVH21----------->ARR10 ----------------->AGL1  ------>ZmHOX2a(1) ------>ZmHOX2a(1)       <------- >WRI1<------NtERF2   --------->GLK1(2)      <---------HSFC1(2) <---------ALFIN1 ------>ZmHOX2a(1)   tacaagccgcagagatcttctccaaatctgcattatcaggtaactgaaacttcctcataaacttccccatcctcctctccatcctcacaaacttcacacc  3884400                                             ------->MYC3                                             <-------MYC3                                             <-------PIF5                                             <-------MYC2                                             ------->PIF5                                             ------->MYC2                                             <-------MYC4                                            --------->ANAC58                                            --------->ANAC58                                        --------->ANAC58                                 --------->ANAC46                     ------->TEIL                                --------->MYB46(3)                   <---------CCA1(2)                               --------->ANAC58                      <---------GLK1(2)                               <---------ALFIN1       <-----------------AGL2              --------->LBD16    <---------YAB1             --------->ANAC58       <-----------------AGL1     <----------DOF2 --ALFIN1              <----------DOF2  --------->ANAC58        ------->TEIL<---------At4g35610     <   ttcattctccttgttgtccctctgtcttttgccactcaccacaagcacgttctcgttctctatctggacctgaatctcatctcctttgattccaggcatg  3884500                        --------->ALFIN1                     --------->LBD16                 --------->ARR14(2)              --------->ANAC58                  <---------At4g35610              --------->ANAC58                  --------->At4g35610              --------->ANAC46              <---------REM1(1)             <-------TEIL              ----------->RAV1(2)                                      <----             ------->TEIL              --------->ZAT2                                           <----             --------->SPL7            --------->At4g35610                                      -----           <---------SPL7              <---------ZAT2                                           <----           --------->TOE1(2)           <---------At4g35610                                      <----           --------->TOE2(2)         <-----------RAV1(2)                <---------TOE1(2)     <------         --------------->AtSPL3     --------->TGA2(2)                   <---------TOE2(2)   <-------GAMYB         <---------------AtSPL8    <-----------HVH21            <---------ANAC46           --------->MYB111(1)         <---------------AtSPL3    --------->TOE2(3)            <---------ANAC58           <---------MYB46(3)       <---------ARR14(2)         --------->bZIP60(1)           <---------ANAC58          <--------P <---------DEAR3(1)<---------LBD16<---------bZIP60(1)       <----------DOF2    --------->ARR11(3) --------->ANAC46------->TEIL   <---------DOF5.7(2)       <---------ANAC58     <---------ARR11(3) ---------LBD16  <---------ARR14(2)<-----------TGA1       <---------ANAC58    <---------At4g35610   tccacggcgaaaacgtacgcatccgggtgctcgataacgtcagctggtgtagcagccattgcctttgcgtctcgcatgtaagctcttgaagggttgttac  3884600                                                                                                  <--                                                                                            <--------                                                                                           <---------MYB52(1)           <---------MYB46(3)                      <---------AHL20(1)                    <-----------RAV1(1) -----ANAC55(2)                                    --------->AHL20(1)                    <---------MYB46(3) -----ANAC55(1)                            <------ZmHOX2a(1)    ------>MYB83--------->ARR14(2)<------ ---->ANAC55(2)                         <---------HSFB2a(2)     ------>MYB46(1)        --------->At4g35610 -----ANAC58                 --------->ANAC58      --------->ARR11(3)       <---------ARR14(2)<------ -----ANAC58      <-----------RAV1(2)   --------->HSFB2a(2)  --------->HSFB2a(1)       <---------At4g35610 -----GT1<---------MYB52(1)  --------->ANAC58 ----------->GT1<---------HSFB2a(1)   --------->TOE2(3)   gagtcttctcggtttgttcttcaggggcttcaagcatgtcttcgaggattgaaaatattggaaaccttccaaactccaaatccattcttagctgttgtgt  3884700                 <---------DAG2                 <----------DOF2         <----------DOF2    <---------ANAC58   <----------DOF2  <---------YAB1         <---------AHL20(2)    <---------ANAC58 <------------------------ANAC81          --------->AHL20(2)            --------- <----------DOF2<---------ANAC58      *TSS                --------->ICU4                >>>>>>>ZML2 ---------GT1   <---------ANAC58 <---------WOX13(1)      ----------->GT1                <---------HSFC1(1) -ANAC46<---------ANAC58       --------->ATHB12        ---------->DOF2                  --------->HSFC1(1) ---ZAT6<---------ANAC58   <<<<<<<<<<MYB80       <---------REM1(1)                      <---------HSFB2a(2) ---ANAC46     ---------->ID1 <---------YAB1    <---------TOE2(3)                       --------->HSFB2a(2)   taactttcttgcttcttggctttttctttggtttgattgattttgattttgatgtaagaaagtattaaatagaagttgagttggatagttctagagcaat  3884800                                                     <---------HSFC1(1)                                                     --------->HSFB2a(2)                                                     --------->HSFC1(1)                                                     <---------HSFB2a(2)       --------->ALFIN1<-----                                               <---------TOE1(3)         <---------HSFB2a(2)   <-----                        --------->HSFB2a(2)    <---------TOE2(3)     <-------GAMYB             ------                        <---------HSFB2a(2)--------->HSFB2a(2)      <---------MYB46(3)   <---------CCA1(1) --->CBF <------------CBF        ---------->DOF2 --------->TOE1(2)  ------>ZmHOX2a(2) ----------->GT1   gtagagagagcgattgtttcggtgttatagaacttaaaagcgcttctctaacgttcgagaaacgtcttgatcgttggagaagtgtagatggatatttcta  3884900                                                                                                    <                                                                                                   <-            --------->DAG2 --------->WRKY18(1)                                                    <--           ---------->DOF2 <---------MYB52(1)                                               <--------  ------->TEIL            <-----------HVH21                                              ----------->GT1 ----HSFC1(1)           --------->MYB59                                                 ----------->GT1 ----HSFB2a(2)      --------->ATHB12                                                  <------ZmHOX2a(1) --->HSFB2a(2)    <---------WOX13(1)                                                <---------TOE2(3)   gacgaatgtagagaaaagcgattgattcggtcaggcccaagaccaattcgttttcaggcccatatgtattctgttttggatttagtaaggatgttaaatt  3885000        <---------SPL7       <------MYB83       <------MYB46(1)      --------------->AtSPL3      --------->MYB59      <---------------AtSPL3      --------------->AtSPL8      --------->MYB46(2)      <---------AtMYB61                             <-----------HVH21      <---------MYB46(3)                   <---------WOX13(1)      --------->MYB111(1)                  XXXXXXXXXXXXXXXXXXXX>MIR170      <---------------AtSPL8               XXXXXXXXXXXXXXXXXXXX>MIR171A                          <---    <---------MYB52(1)                    <------------CBF          --------->ANAC46      <----------  --------->LBD16                        --------->ATHB12           --------->ANAC58 --------->YAB1 ---------LBD16                       <------------CBF       <-------GAMYB        <---------ARR14(2) ----------------AGL1               <---------AHL20(2)      ----------->GT1       --------->ARR14(2) ---------GT1                      --------->AHL20(2)------------>CBF*TSS        <------ZmHOX2a(1)<-- -AHL20(2)--------->SPL7    <---------ANAC46      --------->LBD16   --------->ANAC58<-------TEIL <---   tatccggtttggtacgatttcattcgaatttagtgtataaaattgattgaaccgcgtcaatacggttgaaacgcaaacgcagaggattcatgagtcatgg  3885100                               -------->P                               ------>MYB46(1)                               ------>MYB83                              --------->MYB55(1)                             <---------MYB46(2)                             <---------MYB111(1)   ---------->DOF2      <---------At4g35610    <---------MYB111(2)   <---------ZAT14      --------->At4g35610    <---------MYB59 --------->TOE1(1)      <---------ANAC46     ------->TEIL  <---------YAB1 ------ANAC58              -------->P   <---------ARR11(3)                     <-----------TGA1 -HVH21                 --------->At4g35610 --------->At4g35610                <-----------HVH21 --------DOF2       --------->ARR11(3)  --------->ARR11(3)     <---------bZIP60(1) ------ANAC58       <---------ARR11(3) --------->YAB1----------->GT1<---------At4g35610   cttttgtgaggtgaagtatcaatatcatctacctacctatatgatcatcggactaaagtgaaatgaagtcagcaatttcatcgtcactcttcttcaattc  3885200  Previous    Next  AGI:  At5g12030.1    Description:  AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A). similar to HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G12020.1); similar to 17.6 kDa class II heat shock protein [Brassica rapa] (GB:ABV89637.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20 (InterPro:IPR002068) Range:  from: 3884108    to: 3884738    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g12040.1    Description:  carbon-nitrogen hydrolase family protein. similar to nitrilase, putative [Arabidopsis thaliana] (TAIR:AT4G08790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43865.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) Range:  from: 3885069    to: 3888078    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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