Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    ------->TEIL             <---------ANAC58             <---------ANAC58             <---------ANAC46       <---------LBD16     ------>ZmHOX2a(2)    <---------GLK1(1)   --------->ARR14(2)                 --------->YAB1   --------->ARR11(3)            <---------ATHB12                         <------ZmHOX2a(1)   <---------ARR11(3)       --------->ANAC58                    --------->LBD16   <---------ARR14(2)       --------->ANAC58                <---------ARR14(2)                  <----   <---------AGP1<---------CCA1(2)   <------ZmHOX2a(2)      --------->ARR14(2)       --------->At4g35610 ----GT1--------->ANAC46    --------->ANAC46     <---------ANAC46--------->LBD16--------->YAB1-------   atttggatctacggtacttgtatctagagcaagcaatcgatcataagggttctgtgcatccaaatcccgagaagaaggagagtcatcatcttccattaaa  3823400                                                                                  --------->ICU4                                                                         --------->ARR11(3)                                                                         <---------ARR11(3)                                                                         --------->ARR14(2)        --------->TOE2(3)                                                <---------ARR14(2)      ----     <-----------GT1           --------->MYB52(1)         --------->ANAC46        <---------YAB1 ---- -------GT1                    ----------->RAV1(1)     <---------MYB111(1)  ----------->HVH21-------- --->DOF2         <-----------GT1 ------->GAMYB        --------->MYB46(3)<-----------ARR10  <-------TEIL   accctattaacatcaacttgtaactgaattagacaacagaactcagagcctaatgcaactactccacaatttcaatatctgaccattattcacattcata  3823500                                                                                            ---------                                                                                        <---------ETT(1)                                                                                        ------->GAMYB                                                                                      -------->P                                                                                      --------->MYB52(1)                                                                        <---------ZAT14 --------->At1g77200                                        --------->DAG2      --------->HSFB2a(2)    <---------At4g35610   --------->ZAT6                      ---------->DOF2      <---------HSFB2a(2)    --------->At4g35610 ----->ANAC58                       --------->YAB1         --------->REM1(2)   ------>ZmHOX2a(1) ----->ANAC58                      <---------ATHB12   <---------At5g28300    ----------->RAV1(2) ->YAB1                        <-------TEIL          <-----------GT1    --------->ZAT14--------->DEAR3(2)   cccaaacactactataaatctacaagtacaaggttcaatgataaagttttcaaatttaccttgtagaaactctcttcactcctgtagctaccgacaaagc  3823600                               <-----------HVH21                               <---------RAP2.6(3)                              --------->RAP2.6(2)                              >>>>>>>>>AtERF-4                              >>>>>>>>>AtERF-3                                   ------>ZmHOX2a(2)                              --------->RAP2.3(2)                               <------ZmHOX2a(2)                              ----------->GT1                                  --------->ARR14(3)                              --------->DEAR3(1)                               <---------ARR14(2)                              --------->RAP2.3(3)                              <---------ARR11(3)                             --------->RAP2.3(1)                               --------->ARR14(2)                        --------->LBD16                                        --------->ARR11(3)                  --------->At4g35610                                          <---------ARR14(3)      --------->LBD16  --------->LBD16                                         --------->AGP1    <---------LBD16   --------->HSFB2a(2)                                      <---------AGP1   --------->MYB52(1) <---------HSFB2a(2) --------->ANAC46            --------->ANAC58              - ->DOF2        <------ZmHOX2a(2)<------NtERF2                         --------->ANAC58      ---------   agagacaccggagatagatcagttcccgagagccgtcaaattacaaacaactagctcatacactatctgagaacgaaaacagatcttggattagaaaagg  3823700                                                           <---------AHL20(2)                                                           <---------AHL20(1)                --------                                                       <---------AHL20(2)                    --------            <-------TEIL                  --------->DAG2   --------->AHL20(1)           ---------->DOF2 --------->DOF2      ---------->DOF2      <---------------AtSPL8     ----------->GT1  <-------------- ->DOF2    --------->CCA1(2)             ---------->DOF2--------->AHL20(2)           ----------------   agcaaagccctagatacaattcacaaagaaggaaccaaaacaaaaaagtacccagatttaaaatatttgaaagataaaaactttggagccaaaagaagca  3823800                                               ---------->DOF2  <---------ARR14(2)                                             <---------TOE2(3)  --------->ARR14(2)                                            *TSS              --------->LBD16                                       <---------ARR11(3) --------->ARR14(2)                      --------->DAG2   --------->AHL20(2) ------>MYB83      --------->ANAC46                     ---------->DOF2   --------->AHL20(1) --------->MYB52(1)--------->ANAC58 ->ANAC58          --------->LBD16     <---------AHL20(1) <---------ARR14(2)--------->ANAC58 ->ANAC58         <---------ANAC46<---------ATHB12        ------>MYB46(1)--------->TOE1(2)        --- -AGL15          <---------LBD16--------->GLK1(1)       <---------MYB59  --------->TOE2(2)       <--- ->AGL3  <----------DOF2 ----------->HVH21<---------AHL20(2)<---------LBD16--------->LBD16<---------At4g35610   aaattcgaaaacttttcatcgcggaaagtgacagaaatcaatattttaagaaagagaaccgaaccggaactgaaacccacgaaatcgatttcagataatt  3823900                                           ----------->GT1                                      --------->DAG2                                ----------->GT1                                --------->ANAC46                                --------->ANAC58          <-----------TBP       --------->ANAC58     <---------YAB1       --------->AHL20(2)----------->GT1----------->GT1   --------->YAB1       <----------DOF2--------->DAG2    <-------MYC3        <-----------GT1 --------->CBF --------->ARR11(3)    ---------->DOF2     ------->MYC3    <----------DOF2 --------GT1  <---------CCA1(2) <----------ID1   ---------->DOF2    ---------->DOF2          --------   ttcaattttgatatatatatctagggcttttaatacgaaaaaaggggggaaaaaagacatgtggaaaaatcaaagctttttactgggataaacgatggat  3824000                     --------->LBD16                            <---------ALFIN1                   <---------LBD16                           --------->ZAT18                       --              <---------DAG2                                 <---------ZAT18                       <-              <----------DOF2                                --------->ZAT14                       --      <---------ICU4--------->ANAC46                    ---------->DOF2                            <- --->GT1    <---------At4g35610                        --------->ANAC46           <---------At4g35610   aaatctaatctttccgctttctccgcaaatttctctgcaaatttcaaaatttcttcaacgaagcgcacacctagattaaacttcagtagcccagaaattc  3824100                                                                                    --------->DAG2                                                                              ----------->GT1                                                                       --------->KAN4(2)                                                                      <----------TaMYB80                                                                     ---------->TaMYB80         <---- ------->At4g35610        --------->MYB52(1)                         <---------ARR14(2)   --------->TOE1(2) --------At4g35610       --------->ARR14(2)     ---------->DOF2      <---------KAN4(2)    --------->TOE2(2) ------->ZAT2            <---------ARR14(2)----------->GT1           --------->ARR14(2) ------->TEIL --------ZAT2         >>>>>>>>>TBF1      ----------->GT1          ----------->GT1  ---------->DOF2   gagctgagattgaagagctaagaagaagaaacggagagggagagagagaaaaaagaaaaccctagagagagtatattcgtcggaaaaaagtacctccgat  3824200                                                           --------->AHL20(1)                                                           <---------AHL20(1)                    <---------ANAC58                       <---------AHL20(2)----------->HVH21                    <---------ANAC58                 ----------->GT1        <---------WOX13(1)                <---------ANAC58                 ---------->DOF2    --------->ANAC58     --------->ZAT14 --ZmHOX2a(2)   <---------ANAC58                --------->AHL20(2)  --------->ANAC58     <---------ZAT14   caaaaacgatttcttctagcttccgtcttcttctctctctctcttcgaaataaaagagtaaaatatttgctcgaaatgaatgacagacgactatagtcta  3824300  Previous    Next  AGI:  At5g11860.1    Description:  NLI interacting factor (NIF) family protein. similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G46410.1); similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G46410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66173.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain Dullard-like phosphatase domain; (InterPro:IPR011948) Range:  from: 3821804    to: 3823844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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