Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ZAT18                                                                                    --------->ZAT14                                                                                    <---------ZAT18                                                                             ------>MYB83                                                                             ------>MYB46(1)                                                                             --------->ANAC46                                                        ---------->DOF2      --------->ANAC58                                                       --------->CCA1(2)     --------->ANAC58                                                  ------>ZmHOX2a(1)        ------->GAMYB                                                 --------->TOE2(3)        <---------MYB55(2)       --------->At4g35610                     ------>ZmHOX2a(1)          --------->MYB46(3)        -       <---------At4g35610 <----------DOF2   ------>ZmHOX2a(2)  <---------CCA1(2)---------->DOF2  <-- ------>TOE2(3)         ---------->ID1<----------DOF2 --------->ARR11(3)<-----------GT1       ------>ZmHOX2a(1)   tctcaattcatctccatagagcctttggcctttattgtctcttttgatcctccttagatatagcccgtctctcttaaccacccaaatgcactcttcctca  3810800                                                                                            ---------                                                                                            ---------                                                                                         --------->ZAT14                                                                                         <---------ZAT18                                                                                         --------->ZAT18                                                                                         <---------ZAT14                                                                                       <-------MYC3                                                                                       ------->MYC3                                   --------->LBD16                                     <-------PIF5                                   ------>NtERF2                                       ------->MYC2                        --------->KAN4(2)                            <--------------OsCBT<-------TEIL                 --------->O2     --------->LBD16                  --------->ANAC58    ------->PIF5                 ----------->RAV1(2)                               --------->ANAC58    <-------MYC2                 --------->At4g35610                             <---------ANAC58      ------->MYC4                 <---------At4g35610<------NtERF2           --------->MYB52(1)        <---------ANAC58                 <---------ZAT2   --------->ANAC46          ------>MYB46(1)   --------->At5g28300  <---------GLK1(2)    <---------KAN4(1)      <---------MYB52(1) <---------ANAC58     <---------ANAC58 -------->LBD16 ------>NtERF2    --------->LBD16            ------>MYB83    <---------DEAR3(1) ------ -------LBD16  <---------ALFIN1  <---------LBD16      ----------->HVH21    <---------LBD16  ---------   tccggattatcacattgccacctgaataatctctccccggcaaaaaccgttgctgtctgaccaaatggcgagccaaacgcggtgaagaacgtgcactcaa  3810900                         <---------ICU4 --------->MYB46(3)                   --------->TOE2(3) <---------WRKY18(1)      ----------->GT1    <---------AHL20(2)    --------->REM1(2)   --------->AHL20(2)      <----------DOF2 >ANAC58           --------->YAB1 <---------ANAC58         <---------ANAC58                         - >ANAC58         <---------ARR11(3)<----------DOF2         <---------ANAC58    --------->ZAT18    --- ---->DOF2    ----------->GT1     <---------ANAC58         <---------ANAC46 <---------ANAC58     ---- >ANAC46   --------->MYB52(1)     <---------ANAC46     <---------WOX13(1)   <---------ANAC58     ----   agtatgtgtagaaaaacggtatcttaataaatattggcttgaacgaccagcttttggattggcctggtttgagagcatgcgtgcccaatttgttattcga  3811000                                                       <---------ANAC58                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              --------->ARR14(3)                                              <---------ARR14(3)                                      --------->ARR14(2)       <---------MYB52(1)         <---------TOE1(2)    <---------ANAC58     ----------->GT1             ------>ZmHOX2a(1)  <---------CCA1(2)              <---------ANAC46   ------>MYB46(1)               ======================HOX2a_HOX2a               <---------ANAC46   ------>MYB83                  =====================HOX2a_HOX2a           <---------At4g35610  --------->MYB52(1)         <-----------HVH21<---------ARR11(3)         --------->At4g35610  ----------->RAV1(1)       <---------ANAC58  --------->ARR11(3)         <---------ZAT2         ----- --------->AtMYB61          <---------ANAC58  --------->ARR14(2)         <---------At4g35610    ----- -------->MYB46(3)       --------->GLK1(2)    <---------ARR14(2)       <---------DEAR3(1)      ------ --->NtERF2              --------->ARR14(2)  --------->GLK1(1)        <---------ZAT2      ---------->DOF2 ----->MYB46(3)          <---------ARR14(2)  <---------GLK1(1)      --------->LBD16--------->ALFIN1 ----->DEAR3(1)       <---------YAB1  <---------ARR14(2)      --------->TOE1(1) <---------DEAR3(1)   cgaccaacagttaatcgcgaggctacgattccgtcctgggtatatggagatctcgtttcttacctcgaaccgggctgctgatgcggtgtatgcaaagcac  3811100                                           --------->GLK1(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                          <---------GLK1(2)       <---------ALFIN1                                       --------->YAB1   ------>ZmHOX2a(2)                                 <------NtERF2         <------ZmHOX2a(2)                                ------>NtERF2--------->YAB1  ------->TEIL                                <---------MYB46(3)    --------->ARR11(3) ---->ANAC58                   <---------DEAR3(1)     <---------ARR14(2) ---->ANAC58                <---------DEAR3(1)        --------->ARR14(2)        <------------CBF --->ZAT18       <------NtERF2 --------->ALFIN1    ------>ZmHOX2a(2)         <----------DOF2     <---   gctgatgcgatgagaaggcaccatgtgaatgcggtggctaatcggaatcttgatccgatcttgaacccaaaccccattgctctattgaacatttctgttt  3811200                                                                                        <----------DOF2                                                                                       <-------------                                                 --------->MYB52(1)                 <----------DOF2 -                                               ---------->DOF2                    <---------At4g35610                                   <-----------GT1     --------->MYB52(2)     <---------MYB52(1)   <-      <---------TOE1(3)   <---------ZAT6 ----------->RAV1(1)                 <-------GAMYB ----------      <---------TOE2(3)   --------->ALFIN1  ------->GAMYB<---------AtMYB61  <---------MYB46(3) <----- ------AtMYB61    --------->MYB52(1)    --------->MYB46(3)                  --------->MYB52(2) <-----   tggtttttgaggttttatacaaacgggagtgtttgtttaacaacaacagaaaaacggtagtggttttggacgttttgttcgttgagctttcttttccctt  3811300                                                                            <---------ARR11(3)                                                                            --------->ARR11(3)                                                                            --------->GLK1(2)                                             <------MYB46(1)               --------->RVE1(1) -----------ANAC81                           <------MYB83           <---------WOX13(1) --------->ID1                              --------->MYB59        <------------CBF               --- ----------GT1                              <---------AtMYB61     --------->ATHB12         <--------- >ID1                            --------->YAB1                  <---------YAB1      <------------CBF ----DAG2            ----------->GT1      <---------MYB52(1)   <------------CBF    <---------AHL20(2) -----DOF2    ----------->GT1    --------->AHL20(2)          <---------AHL20(2) ----------->GT1  ----   ttttcgtttttagttttagtaaaaagtttaacaaataatattcggtttggtttcaaacagttttatattgattgaaaaaatctagtaaattgaaattgaa  3811400                                                                       --------->ANAC55(2)                                                                    <-------TEIL                                                                <---------TOE2(3)                                                                <---------TOE1(2)                                                                <---------TOE2(2)                                                              <---------MYB52(1)                                                          --------->RVE1(1)                                                         --------->GLK1(2)       --------->YAB1                                                         --------->ARR11(3)     <---------YAB1 <---------AHL20(2)                     <------MYB46(1)  <---------ARR11(3)  ======================== -------->GT1        <----------DOF2    <------MYB83    --------->CCA1(1)    <---------------AGL15 ---CBF    <-----------GT1  <---------YAB1              --------->RVE1(1)    <----------DOF2 ------->GT1  <----------DOF2   <-----------GT1       --------->AHL20(2) ----------->HVH21   tgttaaatttgtttttcttttctctttgttatatttactatttggtttggattaaaaaaaatctcttaggttcatgtgacttttcatagtagtattggac  3811500                                                                           --------------->AGL15                                                                           <---------------AGL15                                                                           --------->TOE2(3)                                                                           --------->TOE1(3)                                                                          <-----------------AGL3                                                                          ----------------->AGL2                                                                          ----------------->AGL3                                                                        <---------CCA1(2)                                                                      --------->YAB1                                       --------->ANAC46              --------------->AtSPL8                                       <---------YAB1            --------->ARR11(3)               ---                                      <---------TOE2(3)          <---------ARR11(3)               ===             <----------DOF2         <-----------GT1            --------->YAB1         <-----------GT1      <----------DOF2  ------>ZmHOX2a(1)            ---------->DOF2  <-------TEIL   <---------ZAT6<-- ===========================================================================================MADS_MADS   taatagttctttagtcttttaagtcctccctagacccatttacgatactatatccaaagttccccatgatattcataccttatatagtattacattacaa  3811600                                                              --------->AHL20(2)                                                              <---------AHL20(2)             ============================bZIP_DOF             <---------YAB1             <---------TGA1a                            --------->TOE2(3)         ----------------->AGL1                        ----------->GT1        --------->MYB52(1)                            ------->TEIL       --------->MYB55(1)                             --------->SPL7      <---------MYB52(2)                             ------>MYB46(1)      --------->MYB46(3)                             ------>MYB83    <---------ICU4<---------PCF2                     --------->MYB52(1)                        ------    <-----------GT1                                --------->MYB46(3)                          ------ --------->YAB1  ----------->HVH21               --------->MYB52(1)                          -------- ------>TOE2(3)--------->ALFIN1    --------->ANAC58<---------MYB59                           <------- ======================bZIP_DOF    --------->ANAC58<---------MYB46(2)                 --------->ANAC58 --------DOF2<---------O2     ---------->DOF2  <---------MYB52(2)<---------YAB1       --------->ANAC58   ctttaataactaccgatgtgggacactgccaaaaaagaagcaaacaaaaactaccgaacgttatattattacaagaacacaactacacaagtaaacctaa  3811700  Previous    Next  AGI:  At5g11810.1    Description:  similar to Os02g0135600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045818.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79019.1) Range:  from: 3808721    to: 3810749    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g11820.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26050.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 3810650    to: 3811177    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version