Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ------>NtERF2         --------->GLK1(2)                                             <---------ETT(1)  --------->TOE2(3)         --------->ARR11(3)                                            ----------->HVH21<xxxxxxxxxxxx         <---------ARR11(3)                                          ------>ZmHOX2a(1) ------>NtERF2        --------->RVE1(1)                                          ------>ZmHOX2a(2)<---------At4g35610        --------->CCA1(1)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->LBD16      --------->AHL20(2)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------LBD16  <---------AHL20(2)                  <---------ANAC46         <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(i) -------ZAT6                        --------->ALFIN1       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       - ------YAB1                        --------->ALFIN1      --------------------->WRI1--------->ANAC46 < --->AGL15               --------->AHL20(2)            ------>NtERF2--------->TOE1(2) --------->DEAR3(1) ----AGL15               <---------AHL20(2)xxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gtattaaaaaaaatcttgttgacttatataaattcaagttggggggtccaatatggctgccaagtttgatcctccgacaacattcccgcagcctcaaata  3753900                                                 --------->ATHB12                       <---------AHL20(2)                                                <---------YAB1                          --------->AHL20(2)       ---------->ID1                        <---------YAB1                <---------------AtSPL8 --------->ATHB51                          <--------HAHB4                  --------------->AtSPL3 --------->ATHB12                          -------->ATHB1                  --------------->AtSPL8 <--------HAHB4                            --------->ATHB51              --------->KAN4(2) --------->AHL20(2)                        <---------ICU4               <----------TaMYB80          - <---------ICU4        --------->ATHB12    --------->YAB1              --------->ARR14(2)          -- -------->ATHB1 ---------->ID1            <---------YAB1               <---------ARR14(2)    -------- <---------AHL20(2) <----------DOF2       --------->ICU4               ---------->TaMYB80   --------- xxxxxxxxxxxsmallRNA(si3)    ----------->HVH21--------->YAB1     --------->YAB1     --------->AHL20(2) -------->ICU4 <-----------GT1            <---------ATHB51      <---------YAB1      <---------AHL20(2) ---------ATHB51<-----------GT1   --------------->AtSPL8      --------->YAB1   <---------TOE1(2)  ---   caattatttgttttttttttccctttgatttgtgacattgtacaattattatgatttgtttctattatcatcgtatattcgtacatttaaaaaaataaaa  3754000      ---------->DOF2     <-----------GT1   <----------ID1         --------->YAB1 -------->DAG2      --------->TOE2(3)                                      <-----------ARR10      <-- ------->DAG2    --------->AHL20(2)                                       <---------CCA1(2)       <-- ->AHL20(2)  --------->ATHB12                               --------->HSFB2a(2)                   <-- >AHL20(2) --------->GLK1(2)          ----------->GT1       <---------HSFB2a(2)   --------->TOE2(3) ------->DOF2<--------HAHB4      --------->YAB1    --------->DEAR3(1)<---------REM1(2)     ----------   aaaaggggaaaagaatcatttacataaataacaattcataatgtaatatcgcaccgagttttatagaagtctacacatatctaatctcaaaatgaaagtg  3754100                                        <------MYB83                                        <------MYB46(1)                                        <---------ANAC58                                       --------->MYB111(2)                                       --------->MYB55(2)                                       <---------MYB46(3)          --------->DAG2                                       --------->MYB111(1)        ---------->DOF2                                       <---------AtMYB61      <---------YAB1                            ----------->GT1            ------------>CBF ---------->DOF2                       --------->AHL20(2)              --------->MYB46(3)                       <---------AHL20(1)   ----------->GT1 --------->YAB1 -------ANAC46         <---------AHL20(2) <---------ANAC46  <---------ICU4                 --------->MYB52(1) -------ANAC58        <---------AHL20(2)<---------ANAC58   --------->ICU4            --------->ANAC46 -------ANAC58        --------->AHL20(2)<---------ANAC46   <---------ATHB51       <---------REM1(2) >DOF2          <----------DOF2        --------->MYB46(2)  <---------ATHB12     --------->ETT(2)   gcttacatgtttcttaaacttttattaaatttgttatatgtttggtgggaaaaaataaccaataatgaaaaagtgaaagttgtctacacgaggtaatgga  3754200                                            --------->ZAT14                                            <---------ZAT14                                    ------->MYC2            --------->SPL7          <-------MYC2            ------>MYB46(1)         ------->MYC3            ------>MYB83            <-------MYC3          --------->TOE1(2)      <---------ALFIN1          --------->TOE2(2)     <---------WRKY12  *TSS                       <----------DOF2       <---------PCF2<------ZmHOX2a(1)   <<<<<<<<<TBF1       --------->At4g35610                 <---   tgaagagagggacctacgacgaaggatgactccgtccacgttcttcttcactgtttgacaataagctccaattttcagacttttcatttcaaacttgtgg  3754300                                                                                                   --                                                                                        <---------ICU4                                    <---------ALFIN1                                   --------->ICU4                                  ------>ZmHOX2a(1)    <---------ICU4     --------->ARR11(3)     <---                    --------->AHL20(2)                <---------YAB1      --------->ARR14(2)    -----                    <---------AHL20(2)        <----------DOF2 --------->ANAC46         <---------YAB1         ------>ZmHOX2a(1)       --------->ANAC46   --------->YAB1        <---------ARR11(3)   <-----         ----------->RAV1(2)  --------->ARR14(2)    <---------ICU4       --------->RVE1(1)     ------ ------PCF2   <---------ANAC46<---------ARR14(2) --------->YAB1          --------->CCA1(1)  ---------   gtctcattttcctctggcctatataaatccactatcctccacttctgtctttcatcatcattccacataaacaaaatatcttcttgctcattattcatca  3754400                                                    --------->CCA1(2)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                                   --------->ARR11(1)                    <-----------HVH21                      <---------ANAC58             <---------ARR11(3)                   <-----------RAV1(1)                      <---------ANAC58             --------->ARR11(3)                 =============== ------->WOX13(1) <----------DOF2                ----------->ARR10                    <------ZmHOX2a(1) ------YAB1 --------->LBD16                  <---------At4g35610                  --------->ALFIN1--- ---->TOE2(3)<---------MYB52(1)            <-----------RAV1(2)                <---------LBD16<------NtERF2 ----ICU4  <---------ANAC46             --------->At4g35610                 -------->P=============== --->YAB1  <---------ANAC55(2)          <---------At4g35610                <-----------GT1  ------>NtERF2 >YAB1    <---------LBD16  ------>ZmHOX2a(1) --------->At4g35610   ------>NtERF2--------->LBD16 xxxxx   tcaatctactactccgtaaactttgcttcctctgtttgtattagctcagaagagatatgggaagtactccgactgatttacccggtgaggatgtcgccga  3754500                  <---------AtMYB61                  --------->ALFIN1                 <------NtERF2                 =======================MYC_MYB               <---------DEAR3(1)               <---------DREB2C(2)              <---------ABI4(1)              <------NtERF2              --------->ATERF1(1)             <---------RAP2.3(1)             <---------ORA47(2)             ------>NtERF2             <---------ERF1             <---------DEAR3(2)            <---------At1g77200            <---------DEAR4(1)            <---------DREB2C(2)            <---------RAP2.3(3)            <---------DEAR3(1)           <------NtERF2           --------->ATERF1(1)          <---------SPL7          <---------ATERF1(1)          <-----------HVH21          ------>NtERF2         <---------DEAR3(1)         <---------ANAC46         --------->DEAR3(1)       --------->LBD16     ------>ZmHOX2a(2)     <---------LBD16    --------->ARR14(1)    <------ZmHOX2a(2)    --------->CCA1(2)                                <---------ZAT2   --------->ARR14(2)                               ------>NtERF2   --------->ARR11(3)         <---------ANAC46     <---------ALFIN1   --------->ARR11(1)         <---------TGA1a      --------->DEAR3(1)   --------->AGP1<-------GAMYB--------->O2       --------->LBD16           --------->STY1(1)   <---------GLK1(2)          --------->TGA1a    ------>NtERF2             <---------MYB52(1)   <---------ARR14(2)         <---------O2  --------->ARR14(2)       <-----------GT1           <----- ==========HOX2a_HOX2a      <---------TGA2(2)   --------->ANAC46    ---------->ARF1            <----- ------>MYB52(1)<---------MYB46(3)     --------->ALFIN1            <-----------HVH21        <-------- ===========HOX2a_HOX2a    ----------->TGA1<------ZmHOX2a(1)   <---------ZAT2           <-----------HVH21 xxxxxxxxxxx>smallRNA(s)   ----------->HVH21<---------ARR14(2) --------->ZAT2          <-----------RAV1(1)   taacagatccggcgtcggcggtggtatttctgacgtctacggtgaggattccgccaccttggaccagcttgtcaccccttgggttacctctgtcgctagg  3754600                 <------ZmHOX2a(2)                <---------ARR11(3)                --------->ARR11(3)                <---------AGP1               <---------CCA1(2)        ------>MYB46(1)        ------>MYB83      --------->MYB46(3)                                                             <----------DOF2      ------->GAMYB                                                                  --------------->AGL15    --------->ANAC58                                            <---------ANAC58     <---------------AGL15    --------->ANAC58           <----------DOF2       --------->WOX13(1)              <---------DAG2  <---------WRKY12------>ZmHOX2a(2)<------------------------ANAC81   --------->At4g35610  <---------WRKY38(1)--------->WOX13(1)   <---------DAG2        <---------ANAC58    <---------ANAC58 -MYB46(1) <----------DOF2    <---------DAG2        ------>ZmHOX2a(2)<---------At4g35610 -MYB83<---------ALFIN1<---------ATHB12   <----------DOF2 <---------YAB1            <---------ANAC58 -MYB52(1)<---------DAG2--------->YAB1 <-----------GT1  --------->YAB1      ---------->DOF2   tgagtcaacccacctttagatctcaatcatacccttttgttttactttttgtgatccatcacaattgcttcagctaagtaaagtttgcttttttaagttt  3754700                                                                               >>>>>>>>>GATA-2                                                                               >>>>>>>>>GATA-3                                                                               >>>>>>>>>GATA-1                                                                               >>>>>>>>>GATA-4                                                                      <----------DOF2                                                                     <---------ANAC58              <---------ANAC46                                       <---------ANAC46         ------>MYB83                                                <---------ANAC58         ------>MYB46(1)                       <---------TOE2(3)   <---------PCF2       <---------MYB59          <---------ZAT6 <---------TOE1(3)--------->ALFIN1<---------WOX13(1)  -     -------->P           ------->TEIL        ---------->DOF2 <-----------RAV1(1)                   <   ctaaacttaccaacttctgtgaaatatgaacttagtgtttcttcttgttaaagttccgatttttctgtggggcttatagtggattgaaatgtttttgttt  3754800  Previous    Next  AGI:  At5g11670.1    Description:  ATNADP-ME2 (NADP-MALIC ENZYME 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor. similar to ATNADP-ME4 (NADP-MALIC ENZYME 4), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT1G79750.1); similar to ATNADP-ME3 (NADP-MALIC ENZYME 3), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G25880.1); similar to ATNADP-M Range:  from: 3754250    to: 3758243    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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