Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         -------->P      ------->GAMYB     --------->MYB46(3)   <-----------GT1  <-----------GT1 ------>AHL20(2) -------AHL20(2)                   <---------AHL20(1) ------AHL20(2)                    --------->AHL20(1) ----->AHL20(2)                    <---------AHL20(2)                     --------->ALFIN1 ->AHL20(1)                       --------->YAB1   ---------->DOF2     <-----------RAV1(1) --AHL20(1)                       --------->AHL20(2)        <-----------GT1       <------ZmHOX2a(1) ->AHL20(2)                 ------>NtERF2       --------->At5g28300 <-----------GT1 --AHL20(2)              ------->GAMYB         ----------->GT1<---------YAB1   <------ZmHOX2a(1)    <   ttttttaacaaccatttcccattacaacgacgacaattatattcgtacagggtaaaagaagattaccattttactggtggaggaggatgagttagtagta  3739700                                                                                  <------NtERF2                                                                                <---------bZIP60(2)                                                                                --------->ETT(1)                            --------->At4g35610                                 <---------ANAC58                          --------->DAG2              --------->ARR14(2)        <---------DEAR3(1)                         ---------->DOF2              <---------ARR14(2)        <---------ANAC46                   <---------ANAC58                  <------NtERF2              <---------ANAC58                   <---------ANAC46                 --------->LBD16            --------->ALFIN1                   <---------ANAC58                <---------ANAC46           <-----------HVH21                  <------NtERF2                   <---------LBD16          <---------ANAC58              <---------MYB46(3)                  --------->ATERF1(1)      <---------ANAC58             <---------AtMYB61                    <------NtERF2            <---------ANAC46             --------->ALFIN1                   <---------DEAR3(1)  <-----------HVH21  <------NtERF2     <--------P  --------->MYB55(2)       <---------MYB46(3) <---------ANAC46 --------->REM1(2)  --------->LBD16<---------MYB46(3)       <-----------RAV1(1)<---------ANAC58----------->HVH21  ----- ---------LBD16 <---------RAP2.6(2)      <---------MYB52(1)  <---------ANAC58--------->ALFIN1--------   tagccgggttgagaagtggtggctgggaaaagctgaagaaaccgttgttggaggcggaaactggcgaggcagtcaggccgtgtcggggcagagaagaggt  3739800                            <---------ANAC58                            <---------ANAC46                   --------->ATERF1(1)                  <---------ATERF1(1)                 <---------GLK1(2)               --------->LBD16                       --------->GLK1(1)           <---------ARR14(2)                        <---------GLK1(1)                            <--        <---------ANAC58    <---------ANAC58  --------->HSFB2a(2)                             -------        <---------ANAC58  --------->WRKY38(1) <---------HSFB2a(2)            --------->ANAC58 -------       <------NtERF2     <---------MYB52(1)  --------->ETT(2)                --------->ANAC58 -------    <------ZmHOX2a(1)   <-------GAMYB--------->ANAC55(2)     --------->ARR11(3)             <-------- ---->ALFIN1 <---------LBD16----------->RAV1(2)    <------ZmHOX2a(1)    <----------ID1   <----------- ->ALFIN1  --------->ARR14(2)        <---------ANAC55(2)     <---------ARR11(3)    <---------ARR11(3)   ggaagaggaggcatgtccggagtctccgttgcctgagacacttatcgtcgagaggaattccaagaactcggattaagacaaacaagatgtgtttgcacgg  3739900                                                                                                    -                                                     --------->ANAC46                            <---         <---------DEAR3(2)             <-----------HVH21    ------->MYC3                       <----      <-----------HVH21      --------->ALFIN1   --------->REM1(2)                              ====== ----------------SPL14     --------->ALFIN1     --------->ZAT14                        ============== -->ANAC58               <------MYB83  <---------ANAC58      <-------MYC3              ------>ZmHOX2a(1) -->ANAC46               <------MYB46(1)<-----------TGA1    --------->ANAC46           ============== -->ANAC58<------NtERF2 --------->MYB111(1)     <---------ZAT14                ---------->DOF2 ====== -AtLEC2--------->ETT(1)--------->MYB111(2)    ----------------------->TaNAC69(2)  --------->ARR11(3) ----AtSPL3            <--------P      <---------ANAC58     <---------O2  ----------->GT1      <-----   cttcttacggtcgggacaagtgcaagtaggtgtggccattagcgtcactgtgtagacgttacacgttgcaccaagaacgtgaaaagttcctgcattagga  3740000                                                                                                  <--                                                                                                  <--                           <---------ZAT2                                                        ----                           --------->At4g35610                                                   ----                     <---------ANAC46                                                            <---                  ----------->TGA1                                                  <---------ANAC58                  ----------->HVH21                                                 <---------ANAC58                 <-----------HVH21                                               <---------MYB52(1)              <---------LBD16                    <------NtERF2              ------------>AtMYB77 <---              ------>ZmHOX2a(2)                 ------>NtERF2             <-----------HVH21<-------TEIL             <------ZmHOX2a(2)                  --------->MYB52(1)       <------MYB83   <---------ANAC58             ==================================HOX2a_HOX2a               <---------MYB46(3)--------->SPL7            --------->ARR14(2)                 <---------ALFIN1          <------MYB46(1)--------->ANAC55(2) -------->ALFIN1--------->LBD16          --------->ARR14(2)             <---------AtMYB61  ------->TEIL ------DEAR3(1) --------->At4g35610      <---------ARR14(2)            <---------MYB52(1)<---------SPL7 -----ORA47(1)=================================HOX2a_HOX2a            <-------GAMYB--------->MYB52(2) ===================HOX2a_HOX2a         ------>ZmHOX2a(1)            <---------ANAC58   <---------ANAC58 ====================HOX2a_HOX2a    <---------ARR14(2)               <---------ANAC58   <---------ANAC55(2) ===================HOX2a_HOX2a     --------->ARR14(2)               <---------ANAC46   <---------ANAC46 ====================HOX2a_HOX2a  --------->HSFC1(2)         --------->ANAC58   --------->At5g28300 -ZmHOX2a(1)<---------ARR14(2)    <---------HSFC1(2)         --------->ANAC58   <-------GAMYB<-------   cggtggagaagacggatccggtgacggagagctcgaagtatcctatctgccaccggttgagccaagaaatgccgttggtcacggttacttacgtacgggg  3740100                                                  <-------GAMYB                                                  --------->At4g35610                                                  <---------ZAT2                                                  <---------At4g35610                                                 <---------MYB46(3)                                                 --------->MYB55(2)             ----------->RAV1(1)               *TSS <<<<<<<<<<AtWER            <---------ETT(1)                 --------->ANAC58            ----------->HVH21                --------->ANAC58           ------>ZmHOX2a(2)                 <---------RAP2.6(2)           --------->DEAR3(2)                <---------ANAC55(2)          <------ZmHOX2a(2)                 --------->RAP2.6(3)         <---------ARR14(2)               <---------MYB52(1)                      <---------ZAT6     <---------WOX13(1)                  <-------GAMYB                          <---------ANAC58   --------->ATHB12                     <---------ANAC58                        <---------ANAC58  <---------AHL20(2)                    <---------ANAC58                   --------->ARR11(3)       < -------CCA1(1)                         --------->ANAC55(2)                <---------ARR11(3)       - -------RVE1(1)                         <---------ANAC55(2)               <---------AHL20(2)      <-- ----->ARR14(2)                      ------------>MYB.PH3(1)            <-----------TBP       ------- ----->ARR11(3)           <---------ARR11(3)--------->SPL7            --------->CCA1(2)       <------ ------ARR14(2)    --------->GLK1(2)<---------GLK1(1)                --------->ARR11(3)<---------ANAC55(2) ------ARR11(3)   <---------GLK1(2) --------->GLK1(1)                <---------ARR11(3)<---------ANAC46 --LBD16 --------->ARR14(2)<---------YAB1<-----------HVH21--------->GLK1(2)--------->AHL20(1) <------   atatttgattggatccgacagattccatgatttttgagaattccgttacggcagttggagaatttatgcgagatatatatattcgtgttaagtatatagg  3740200                                                                                          <---------GLK1(1)                                                                                 <---------ANAC58                                                                                 --------->O2                                                                                 <---------O2                                                                                 <---------TGA1a                                                                                 <---------bZIP60(2)                                                                          <---------At5g28300                                                                 --------->ALFIN1====================                                                                ------->MYC2     --------->TGA1a                   --------->TGA2(2)                            <-------MYC4     ====================                  <-----------HVH21                             <-------MYC2     <---------ANAC46                  <-----------TGA1                              ------->MYC4     <---------ANAC58                 --------->ANAC58                               <-------MYC3    <------NtERF2                 --------->ANAC58      --------->GLK1(2)        ------->MYC3   ------>NtERF2<------ZmHOX2a(2)                 --------->ANAC46     <---------ARR14(2)       --------->TGA1a----------->HVH21                 --------->ANAC55(1)  <---------GLK1(2)        <---------O2 ------->GAMYB --------->GLK1(1)     <---------ANAC55(2)             --------->GLK1(1)         ======================================     <---------ANAC46 --------->ANAC55(2)     <---------AtLEC2 --------->O2 ===============MYC_MYB  <---------MYB52(1)  <---------ANAC55(2) --------------------->WRI1     --------->MYB52(1)--------->ARR11(3) ---------ZAT6   --------->ANAC55(2) --------->HSFB2a(1)       <---------TGA1a--------->DEAR3(1) ---------->GT1  --------->O2     --------->LBD16              =====================MYC_MYB<---------ARR11(3) -----TEIL    <-------TEIL      <---------LBD16                <---------ANAC55(2)      <------ZmHOX2a(1) -------->AtSPL3 --------->TGA1a--------->ZAT14                --------->ANAC55(2)  --------->REM1(2) ---------AtSPL8 --------->bZIP60(2)----------->ARR10         ------------>OsbHLH66--------->ALFIN1 ---------AtSPL3 <---------O2   <---------ZAT14              <---------ALFIN1 <---------DEAR3(1)-----   tacagttacttatacatacacgtcatgtaatctgtgcggagattctttgtatgaaacgttggcacacgtgtggaataacggcgacgtgtaggagatcaca  3740300           --------->ANAC58           --------->ANAC55(1)           --------->ANAC46          <---------LBD16        <---------REM1(2)                                                <----------DOF2      ----------->HVH21                                           <---------ANAC58     <-----------HVH21     <---------ANAC58                       <---------ANAC46   <------NtERF2    --------->DAG2                              <-----------HVH21            <-------   <---------------------WRI1                                  --------->O2                  -------- <---------DEAR3(1)---------->DOF2                 <-----------GT1<---------ANAC58         <---------PCF2 ======bZIP_DOF <------MYB46(1)                  <---------AHL20(2)   <---------AtMYB61 --------->ALFIN1 ======bZIP_DOF ----------->GT1           ------>ZmHOX2a(2)    --------->ANAC46   <---------YAB1<---- ======bZIP_DOF <------MYB83              ----------->GT1      <---------O2       ----------->HVH21 ----->DOF2--------->ANAC58<---------ANAC58      --------->AHL20(2) <---------ANAC46  <-----------RAV1(1)   aagacggcgttacacggaaggtaaagtttacttggtttactggatcgaaaattaaacaattttagacgtcgtgtggtttttggtatgactgtgggacatc  3740400   <---------MYB52(1) <---------ANAC46 <---------ANAC58 <---------ANAC58  <---------DAG2     <------NtERF2 --bZIP60(1)       <----------DOF2  <---------DEAR3(1)                        <---------ANAC58 ->bZIP60(1) <------------CBF  <---------DOF5.7(2)                            <---------ANAC58 -----ICU4<-----------HVH21 --------->YAB1    ----------->GT1*TSS          <----------DOF2   --------   atgccgtttgtctgtcattgactttttgtttgataacgtcgtcgtttttggttaaacctcgaaaaacccctctctctctttcttgctcttgttaacctag  3740500                                                                                                    <                                                                                              ------>ZmHOX2a(2)               <-----------GT1                                                               <------ZmHOX2a(2)           <---------At4g35610      --------->LBD16                                          --------           --------->At4g35610      ------>NtERF2                                           ---------           <---------ZAT2          <---------LBD16                                          <--------     <-----------ARR10             <---------ETT(1)                                         ---------     <---------ARR11(3)    <---------ANAC58                  ------>ZmHOX2a(2)              <--------     --------->ARR11(3)    <---------ANAC46                --------->ARR11(3)               ---------    <---------GLK1(2)   <---------MYB52(1)    <---------ANAC58           --------->TOE2(2)  <-------- --------->YAB1--------->REM1(1)  <---------LBD16          <---------ARR11(3)             ----------- ->TOE1(2) --------->ZAT2  <---------ANAC58   <---------ANAC58<----------DOF2        <---------ANAC46   aaatcaaaatctcagcttcaccattcgtttcgtttttccggcaaaatggcttcacgatgtcgatctttgtcaaaaccagcgttttctgcgtttagatctg  3740600  Previous    Next  AGI:  At5g11620.1    Description:  SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO44015.1); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 3739014    to: 3740147    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g11630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17310.1); similar to unknown [Populus trichocarpa] (GB:ABK94391.1) Range:  from: 3740461    to: 3742140    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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