Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->TGA2(2)                <-----------TGA1               <---------ANAC55(2)               <---------O2               --------->TGA1a               --------->ANAC46               --------->ANAC58               --------->ANAC55(1)               --------->ANAC55(2)               --------->ANAC58               --------->bZIP60(2)               --------->bZIP60(1)               --------->O2               <---------bZIP60(1)              <-----------STF1         ================bZIP_DOF                             --------->AHL20(2)         ---------->DOF2                                      <---------AHL20(2)       --------->LBD16                                        <---------AHL20(1)      --------->ANAC46                              <---------ZAT6   --------->ARR14(2)                            --------->LBD16         --------->ANAC46   <---------ARR14(2)  <---------YAB1        ------->TEIL --------->ZAT6--------->LBD16  --------->CCA1(1)  <---------ICU4          --------->ARR14(2)     <-----------GT1  --------->RVE1(1) <---------YAB1           --------->GLK1(2)--------->YAB1  <---------GLK1(1) --------->ICU4           <---------ARR14(2)<---------AHL20(2)   caaaatatccgaaaaccacgtcatgatgaaaacttcgatctacaacgaatccgagtcttaacaataaaattttccacagaagttttatctaacaatgaac  3734700                                               <---------TOE1(3)                                               <---------TOE2(3)                                            ------>ZmHOX2a(1)                                           --------->TOE2(3)                                           --------->TOE1(3)                                ------>ZmHOX2a(2)                                ========================HOX2a_HOX2a                       <------ZmHOX2a(2)                                ===================HOX2a_HOX2a                      --------->TOE1(2)                   <----------DOF2  <----------DOF2       <---------AHL20(2)    <---------GLK1(2) ---            --------->ZAT14   <---------ARR14(2)         --------->YAB1      --------->YAB1       <--            <---------ZAT18   --------->ARR14(2) <------ZmHOX2a(1)    ----------------->AGL2      ---   aatctacaattcgatgcactcctttagagctagatcggctttaatccttaaggaatttataaaaatcagagaacccaaatcagaaacttgcgatcaaaaa  3734800                                                                        --------->ARR14(2)                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR14(3)                                                           <-----------ARR10                                         ----------->TGA1  <---------ARR14(3)                                         ----------->HVH21 <---------ARR11(3)                                 --------->GLK1(1)         --------->GLK1(2)        ------>ZmHOX2a(2)                                 <---------GLK1(1)         <---------AGP1  <---------ETT(1)                             --------->TOE1(1)             <---------ARR14(2)    --------->ATHB12                             --------->TOE2(1)             --------->ARR14(2)   <---------YAB1                            <---------LBD16--------->RAP2.6(3)          --------->GLK1(2)   --------->ZAT6          --------->TOE1(2)  --------->At5g28300       <---------ARR14(2)--------->At4g35610 ------>TOE2(3)     <---------WOX13(1)  <-----------HVH21  --------->ARR11(3)   --------->ICU4 --------DOF2    --------->LBD16<---------ARR14(2)        <------ZmHOX2a(1)--------->ANAC46         < ------>TOE1(3)<---------LBD16  --------->ARR14(2)        =================================HOX2a_HOX2a   ctttaacacaagagttttcccgattgatacctcggatttcgccgtgacggtagaaacagaggatctgggtttagaatccgacatgatcggtctgctagag  3734900                  ========================HOX2a_HOX2a                  ===================HOX2a_HOX2a                  ====================HOX2a_HOX2a                         <---------ANAC58                  ------>ZmHOX2a(1)                                       <---------ANAC58                 --------->TOE2(3)                                     --------->ALFIN1         <----------DOF2                   <---------HSFB2a(2)       <---------ANAC58     ====================HOX2a_HOX2a       --------->HSFB2a(2)       <---------ANAC46     ------>ZmHOX2a(2)             ------>ZmHOX2a(2)                 <---------ANAC58    <------ZmHOX2a(2)            --------->ARR11(3)                  --------->O2    =====================HOX2a_HOX2a      <---------LBD16            <---------O2   --------->ARR14(2)            <---------ARR11(3)                  <---------bZIP60(2)   --------->ARR11(3)          ------>ZmHOX2a(2)              --------->ANAC58                      -   <---------ARR11(3)         <------ZmHOX2a(2)               --------->ANAC58                      =   <---------ARR14(2)        <---------ARR14(2)               --------->ANAC46      --------->At4g35610 ------NtERF2  ---------->ID1--------->ARR14(2)  ---------->DOF2 ------->TEIL       <---------At4g35610   gtcgcgatcttctttttgtccttaatagacggatcgatcttgactctggaagaaagagaagaagacgcatcgcgtggctcgctcttagctgaactaggtc  3735000                 --------->DAG2                ---------->DOF2            --------->AtLEC2                                                      <---------ANAC58         <------NtERF2                                                            <---------ANAC58        ------>NtERF2                                                        --------->YAB1       --------->bZIP60(1)                                                   <---------ICU4       <---------ETT(2)                                                      <--------ATHB1       <---------bZIP60(1)                                                   --------->ATHB12       --------->ETT(2)                                                     <---------ATHB12      ---------->ID1                                                        --------->ICU4    <-----------RAV1(1)                  --------->At4g35610                <---------YAB1          *TSS    --------->ALFIN1                     <---------At4g35610          <---------ETT(1)             <-  ------>ZmHOX2a(1)            --------->TOE1(3)                   --------->ARR14(2)           ----- ---------->RAV1(2)           ----------->RAV1(2)  <---------DAG2  --------->GLK1(2)            ----- ===============RAV         <-----------GT1        <----------DOF2 <---------ARR14(2)    ---------->DOF2   tctcctgtgtcgccatgaaaaagctcagattaacctgaagttcagctcaactactttttctgcttgaaaaatccgacaatgattccttgagcaaagagag  3735100                                                                                    <---------ARR14(2)                                                                                   <-------GAMYB                                                                                  <---------MYB46(3)                                                                                 <---------ANAC46 ---                              ------>ZmHOX2a(1) --------->At5g28300              <---------RAP2.6(2)                            <-----------------AGL1                      --------->MYB52(1)       ----   --------->HSFB2a(1)   <----------DOF2       ----------->GT1         --------->TOE1(2)         ----   <---------HSFB2a(1) ------>NtERF2        --------->MYB52(1)        <---------MYB52(2)      ------- ------TEIL          ---------->ID1 --------->ANAC55(2)       ----------->GT1   <---------LBD16<----- ---->At4g35610  <---------ANAC58   <---------ANAC55(2)      ----------->GT1   ------------>AtMYB77 ---->CCA1(2)    <---------ANAC58  --------->MYB59         ---------->DOF2 --------->ATHB12   <------   atgcaatcttccgattaagtcttgccgctttcctagttatgtaatgaaacggtaaaaactggaaagttaaaaacgaacgatttgcggttaccatattaac  3735200    <---------AHL20(2)    --------->AHL20(2)   <---------AHL20(2)                                                                            ====   --------->AHL20(2)                                                                            <--- ------>At5g28300                                                                                ---- --->GAMYB                      --------->ANAC58               <-----------GT1                ------- ------->GT1            --------->YAB1                  <----------DOF2                  --------->YAB1 -->MYB52(1)           --------->ICU4                  <---------DAG2       --------->ICU4 <---------YAB1 ----TOE2(3)        <------ZmHOX2a(1)               <-----------GT1    ----------->GT1  --------->ICU4 -----GT1   <-----------GT1     --------->ANAC58  <-----------GT1 ---------->DOF2      <---------WOX13(1)   ggtaatttaaaaatttacacgaggaataataaacactcaccaattggaggttttacaccttttttttacaaagttgtaaaaatttgttgaatgatgaatc  3735300                             <---------ATHB12                             --------->ICU4                 <---------YAB1   --------->YAB1       <---------------AGL15                 <---------AHL20(2)           <---------GLK1(2)  ---------->DOF2--------->AHL20(2)---------->DOF2    --------->TOE2(3)     <---------AHL20(2) ==============================================MADS_MADS                <---------YAB1     <--------- ------------AGL15           ----------------->AGL3 <---------AHL20(2)<----------DOF2     <---------- ----------->AGL15           ==========================================MADS_MADS      --------->ICU4 >TEIL   --------->ICU4<---------TOE2(3)<-----------GT1--------------->AGL15--------->AHL20(2)-------   ttttaaaagaaataagtatataattgtggtaatcaataaaagtaaccagattattttcttaattttgaaatactttgattaaatactaatttttaacctt  3735400                                   ------>ZmHOX2a(2)  --------->DAG2                 ------->TEIL                                                   ----- ---------->DOF2                 <---------ARR11(3)                                            <----- --GT1                           --------->ARR11(3)                                            ------ -GT1   <-----------GT1  <<<<<<<<<<<<<<<<<LFY                       ------->TEIL               <----- -->TOE2(3)    <-------TEIL      <---------AGP1                  <---------YAB1               <------   tgaaaaagttttacaagttcattaacttaacaatggatctatttgtaatcaagtccaattggctaatatgaatcagtaatctacaaaatacaatcttccg  3735500           <---------ICU4           -------->ATHB1           --------->ATHB12           --------->ATHB51          <---------YAB1          --------->ICU4                                                                        -----       --------->AHL20(2)                                                                       -----       <---------AHL20(2)                                                                       -----    ----------->GT1                                       --------->AHL20(2)                  ------- --------->ANAC55(2)                                      <---------AHL20(2)                  <------ ---->LBD16<---------AHL20(2)                          ------>MYB83                           <------ ----ANAC46-------->HAHB4---------->DOF2               ------>MYB46(1)                        <------ --->HSFB2a(2)     --------->ANAC58                  --------->TOE2(3)                       -------- ----HSFB2a(2)     --------->ANAC58           <-----------HVH21 ----------->GT1            <--------- ---LBD16 <---------ATHB51          --------->AtMYB61<---------MYB59                   <-------GAMYB   gagacgtagttaattattggcaagtagcaaaggccaaaccaaaacccttgtcaaacctaattaatctggctaaaacgtttgaaaaactcggttataccaa  3735600  Previous    Next  AGI:  At5g11600.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44023.1) Range:  from: 3733655    to: 3735100    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g11610.1    Description:  exostosin family protein. similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G25820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44025.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) Range:  from: 3735441    to: 3738218    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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