Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------AHL20(2)                                                               --------->ARR14(2)                                         --------->AHL20(2)    <---------ARR11(3)                                   <---------WOX13(1)        ----------->ARR10                <-----------GT1  --------->ATHB12<---------WOX13(1)<-------TEIL                 <----        ---------->DOF2   <---------ANAC55(2)  --------->ATHB12--------->ARR11(3)               <----        --------->ZAT14   --------->ANAC55(2) <---------AHL20(2)<---------RVE1(1)   --------->YAB1      --------->ANAC46<---------ARR11(3) <---------AHL20(2)---------->DOF2         --------->ICU4  <- -----DOF2    <----------DOF2   <---------AHL20(2)--------->WRKY38(1)   --------->AHL20(2) <---------AHL20(2)   ttctatacactaaagtctttacaatatcacatatttcattgattttatttcattgactatgtaaagatattcatttatatatacaattagtatttttttt  3627500                                                    --------->O2                                                    <---------O2                                            <---------ANAC58                                          <---------MYB46(3)                                        <---------MYB52(1)                                    <------ZmHOX2a(2)     <-------TEIL       --------------->AtSPL8      <---------ARR14(2)     <---------ZAT18                ------->TEIL  ---------->DOF2            <---------MYB46(3)--------->PCF2                ---------->DOF2 -----AHL20(2)              --------->ALFIN1<---------ANAC58       --------->MYB52(1)    <-------TEIL -----YAB1                <-----------RAV1(1)  <---------PCF5      <-----------GT1   <---------------AtSPL8 --------WOX13(1)   ----------->HVH21 --------->ATHB12    --------->ZAT18  ----------->HVH21    -----   aattgaaagttagtactagtatgtgactctgtgggtcgatccattggctggcccacgaggtccactacttaaccggtctgaaagttttatgtacataccg  3627600                                                                             <------MYB83                                                                             <------MYB46(1)                                                               <---------ARR11(3)                                                               --------->ARR11(3)                                                               --------->ARR14(2)                    --------->ZAT18               <-----------GT1           <---------AtMYB61    <---                    <---------ZAT14       <---------TOE1(2)    <---------ARR14(2)   <---------MYB52(1)                  <---------ZAT18        ------>ZmHOX2a(1)     <---------GLK1(2)   <------------CBF        ----------->GT1            <---------ANAC58           <------ZmHOX2a(1) >>>>>>>>>>>>>>>>>LFY ---->LBD16       --------->ZAT14  <---------ANAC58    <------------CBF     --------->MYB59   -------   cataagagaccggtaaacagagcgctctgtttttgtttcgttcctagggttttaacaaattgaaggattttctagggtttggttccattggtctgtttca  3627700                                                                ------>ZmHOX2a(2)                --------->CCA1(2)          <---------YAB1      <------ZmHOX2a(2)               <---------ARR11(3)          --------->ICU4     <---------ARR14(3)         --------->ANAC55(2)            <---------YAB1        <---------ARR14(2)         <---------ANAC55(2)        <---------ARR14(2)        <-----------ARR10         --------->ANAC46        <---------ANAC46             <---------AGP1         --------->ANAC58        <---------ANAC58             --------->ARR14(3)         --------->ANAC58    <------------CBF                 --------->ARR14(2)        ------->TEIL        --------->ATHB12                  --------->ARR11(3)    <---------------AtSPL3 <------ZmHOX2a(2)         <---------ANAC58                          ------ <---------ANAC58         <---------ARR11(3)         <---------ANAC58                          ------ <---------ANAC58         --------->ARR11(3)  <---------YAB1  <---------ARR11(3)   ---------->DOF2 ---------CBF  --------->ARR11(3)<---------ANAC58<------------CBF                --------->MYB46(3) ----->CBF--------->TOE1(2)<---------YAB1<---------At4g35610----------->ARR10  ----------->RAV1(1)   attgtttgtgtacgtaagatatagacaagatcattgggtattctgatgatgaattgctcgtgaagatcttatcgtttcttccaacaaaagttgctgtaag  3627800                                                                                              <------                                                                                              <------                                                                                       <---------At4g35610                                                                                       --------->HSFB2a(1)                                                                                       --------->At4g35610                                                                                       <---------HSFB2a(1)                                                ----------->GT1                       <---------ARR14(2)                                   <---------MYB52(1)            --------->ALFIN1     --------->GLK1(2)                                   ------------>CBF    --------->ANAC58              <---------GLK1(2)                                  <-----------HVH21    --------->ANAC58   <---------YAB1      -------    <---------ARR14(2)           --------->DEAR3(1)  ---------->DOF2      <---------AHL20(2) ------>NtERF2 --->ANAC58              --------->YAB1   <---------YAB1       <------ZmHOX2a(1)    <------ZmHOX2a(1) --->ANAC58             <---------YAB1  --------->YAB1--------->DAG2   <----------DOF2--------->ARR14(2)   cacgagtattttgccaaaacttgactacgataacaccgtcaattttgatatggagaaaagcaagaggatggagctttttattgacaggaatctgccagct  3627900                                                                                               <-----                                                                                              <------                                                                             <---------ANAC58 -------                                                                             <---------ANAC58 -------                                                                             <---------ANAC55(1)  ---                                      ------->TEIL                      <---------MYB46(3)   <-------                              --------->TOE1(3)                    <---------LBD16<---------At4g35610                              --------->TOE2(3)                    <---------At5g28300       --------                              <---------MYB59              --------->ZAT14   --------->ANAC55(2) <--- ---At4g35610               ------->TEIL                   <---------ZAT14   <---------ANAC46-------- ---ZAT2                 <---------ATHB12           ----------->HVH21  --------->ALFIN1 <---------ZAT6 -->ZAT2            <---------At4g35610           <-------GAMYB   <-----------GT1 --------->At4g35610   tgtgtctcaagtctatctgttcatctaatcaacctaaatgtatcaaattttgggttgacattgcagtttcacggtgtttgcgtgagctaagtgttactta  3628000   <------ZmHOX2a(1) ----ICU4 ---------AGL15 -------->AGL15 -->ICU4 ------>YAB1                                                     ----------->HVH21 --ANAC55(2)                                             <---------ARR14(2) --------->AGL3                                          --------->ARR14(2)                      ---- ------YAB1       <------ZmHOX2a(1) ------>NtERF2       <---------CCA1(2)                    -------- ->ANAC55(2)--------->YAB1         <---------ANAC46 --------->AtLEC2    <---------AHL20(2)   <-------   ttataggagaacattgatcaggaactatgcattactgccgagtagtttgtatacttgcaaatctctagtgacatttttttttttttttttttgaataaaa  3628100                                                           <-----------GT1                                                        <---------YAB1                                                       --------->AHL20(2)                                                     <---------RVE1(1)                                                    <---------ARR11(3)                --------->TOE1(3)                                                    <---------GLK1(2)                 --------->TOE2(3)      <---------AHL20(2)                            --------->ARR11(3)     ----------->GT1     <---------AHL20(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      --------->CCA1(2)     --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------At4g35610     <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------RAV1(2) --------->TOE1(2)     --------->AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <-----------HVH21     --------->TOE2(2) ------->GT1            <-----------GT1   <---------MYB46(3)   --------->ANAC46       <xxxxxxxxxxxxxx ->AHL20(2)        <----------DOF2      <---------MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    - --AHL20(2)        <---------DAG2 --------->ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <--------   tgtaaaatttattcgaaaaaacttttttacatcaagtgcaacgtttgtttagaagatttttatacaggtcagaagataagaaaaaaaacctaagcttttg  3628200                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                                     <----------TaMYB80                                                                     --------->GLK1(1)                                                                    ---------->TaMYB80                                                                    ----------->ARR10                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                                      <-----------ARR10             --------->ARR14(2)                                      <---------ARR11(3)            <---------ARR14(2)                                      --------->ARR11(3)           <------ZmHOX2a(1)                                      <---------ARR14(2)       ------>ZmHOX2a(2)                                --------->YAB1               --------->ARR14(2)                                ------->GAMYB                <---------ARR14(2)                   --------->ZAT2     --------->ARR14(2)  --------->ANAC55(2)                   <---------ZAT2  --------->YAB1         --------->ANAC55(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   --------->ANAC58  <---------ARR11(3)<---------ANAC58  <---------ARR11(1)  --------->ANAC58  <---------ARR14(2)  --------->ARR11(3)<---------ANAC58 <---------CCA1(2)    --------->ANAC46  --------->ARR14(2) --------->YAB1   ------>MYB83  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------GLK1(1) xxxxxxxxxsmallRNA(si3)        --------->MYB46(3)        <---------LBD16  --------->LBD16 -------->ICU4    ------>MYB46(1) <------ZmHOX2a(2)    <---------REM1(2)<---------LBD16<---------ANAC58 --DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------HVH21<------ZmHOX2a(2)        <---------ANAC58   caattatcttgaggcaaaccaagcttgcatacaacgatcatatcttcggtcaccttgttcacggatcgaggatatccggtttcggacttgtttgtcaagt  3628300                                      <---------ARR14(2)                              <---------ANAC58                              <---------ANAC58                              <---------ANAC46<---------TOE1(2)                                ------                         --------->ARR11(3)--------->TOE2(1)                           --------->ALFIN1                         <---------GLK1(2)------>ZmHOX2a(1)                       ---------->DOF2                         <---------ARR11(3)--------->TOE1(1)                   --------->TOE1(3)                ---------->DOF2       --------->ARR14(2)                       --------->TOE2(3)     --------->ATHB12  ----------->ARR10 <---------ANAC46   <---------ALFIN1 ------->TEIL   <--------   agtctggtcattgaaactgaaagacgagattttcgtggacgttcctcgtatggtttgtctcccctccttgaaaactttgcaccttaaaggtgtgatgtat  3628400  Previous    Next  AGI:  At5g11370.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63564.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 3627850    to: 3629718    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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