Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                <---------SPL7                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                ----------->HVH21                                                                <------NtERF2                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <---------ANAC46                 xxxxxx                                                              <---------ANAC58                 xxxxxx                                                             <---------LBD16                  <------                                                          <---------WOX13(1)                  xxxxxxx                                                         --------->ARR14(2)                  xxxxxxxx                                  <---------AHL20(2)     <---------ARR14(2)                  xxxxxxxx                                 --------->AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(i)          ---------                                 <---------AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(s)        <xxxxxxxxxx                             --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <--------                             <---------AHL20(2)      xxxxxxxxxxxxxxxx>smallRNA(i) <---------MYB59                             --------->AHL20(1)      xxxxxxxxxxxxxxxx>smallRNA(s)----------->GT1xxxxx                             <---------AHL20(1)     xxxxxxxxxxxxxxxx>smallRNA(i) --------->ANAC58                          --------->YAB1            xxxxxxxxxxxxxxxx>smallRNA(s) --------->ANAC58                        <---------YAB1             ----------->HVH21 <xxxxxxxxxxxxxxxxsmallRNA(s) ---                        <---------AHL20(2)         <---------SPL7  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->AHL20(2)        xxxxxxxxxxxxxxxx>smallRNA(s)   <---------ANAC55(2)                  <------ZmHOX2a(2)              <---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->ARR11(3)              --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------YAB1   --------->YAB1            --------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      <xxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxx ---->YAB1       <---------ARR11(3)            <-----------GT1<---------ANAC58   --------->ANAC55(2) --TEIL--------->YAB1--------->ICU4        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------ZmHOX2a(1)xxxxx >ATHB12 <---------YAB1--------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxx   ataaacatatcataaataagatcaatattaataaaataaatagttttttttacgggacggattggcgggacgagtttagcaggacgtaacttaataacaa  3566800                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <---------AHL20(2)                   --------->AHL20(2)                   <---------AHL20(1)                   --------->AHL20(1)                 --------->AHL20(1)                 <---------AHL20(1)                 <---------ARR11(3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i2) ---YAB1      --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxx>smallRNA(i2)                           <-----------GT1 xxxxxxxxxxxxxxx>smallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) >YAB1       --------->YAB1             <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <---------ANAC46 ---GT1 --------->AHL20(2)        <-------TEIL <----------DOF2--------->TOE2(3)    ----------->RAV1(2) xxxxxxxxxxxxxxxxxx>smallRNA(s2) --------->CCA1(2)--------->AHL20(2)               <---------At4g35610 ------>YAB1--------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->At4g35610 xxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------AHL20(1) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(1) xxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ARR11(3) xxsmallRNA(i2)  --------->ARR11(3)    <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->AHL20(2)          --   ttgtaaactataaaataaaaatattttatagatagatacaatttgcaaacttttatatatactaacttaaaaaaaaaatattgtcccctgcggtataaga  3566900                                      <---------ARR11(3)                                      --------->ARR14(2)                                      <---------ARR14(2)                                      --------->ARR11(3)                      <---------YAB1 --------->CCA1(1)                    --------------->AGL15                    <---------------AGL15 ------>ZmHOX2a(1)                   <---------YAB1    --------->RVE1(1)                   --------->ICU4--------->AHL20(1)       <---------ARR11(3)        --------->AHL20(2)       --------->GLK1(2)---------->DOF2  --------->TOE2(3)       --------->ARR11(3) <---------TOE2(3)                          <----------DOF2      ------>ZmHOX2a(1) --------->GT1  <---------YAB1   <---------AHL20(2)      ---------->ID1       <---------TOE2(3)     -   cgggttaaaaatctagttgttattattaaaggaaataaaatatcctcataaaacaatttgttgtaatctatctttgggctaatgttcttatcctacaaga  3567000                                            <---------YAB1                                         ------------>ATHB5                                       <------ZmHOX2a(2)             ---------->DOF2                           --------->AHL20(1)--------->ATHB12    --------->ZAT18                           --------->AHL20(2)<---------ICU4      ------>NtERF2           --------->ARR14(2)    <---------ANAC58         --------->ATHB51           <---------ARR14(2)    <---------ANAC46         --------->YAB1     <---------WRKY18(1)   <---------AHL20(2)-------->ATHB1      <---------ZAT18--------->YAB1    ----------->HVH21     --------->AHL20(2)<---------ATHB12 <---------DEAR3(1)<-------TEIL     <---- ------>TEIL     <---------ANAC46<---------ANAC58        <---------ATHB12    <---------ARR14(2) -----   cgaaccctgaccgtattcgtcgtagaaaaaaaattgcttcgatcccatcattgagttcaataatcggcgcacaaaggccgattcataaaaactctaggcc  3567100                                                             -------->P                                                            --------->MYB55(1)                                                           <---------MYB46(2)                                                           <---------MYB111(2)                                                           --------->DEAR3(1)                                                           --------->AtMYB61                                                           --------->MYB46(3)                                                           <---------MYB111(1)                                                     --------->ANAC58                                                     --------->ANAC46                                                     --------->ANAC58                                                   <-----------GT1                                               <---------AHL20(2)                                              --------->AHL20(1)                                              <---------AHL20(1)      ---------->DOF2                        <---------AHL20(2)------->GAMYB  <---------TOE2(3)                        <---------AHL20(2)------>MYB46(1) <---------AHL20(2) ---------->DOF2         --------->ARR14(2)<-----------TBP <---------MYB55(2)--------->AHL20(2)  ---- -----------AGL15        <---------ARR14(2)--------->AHL20(2)------>MYB83   --------->AHL20(2)  ----- ---------->AGL15     ------->GAMYB      ----------->TBP ------>NtERF2     *TSS          <-----------HVH21   cattaaagtaaagcccattctcaaccctatccagtctccctgtatatatatatttacgacaccaacccagcgttgatatttaattttcttcagtcagaga  3567200                                    <---------At4g35610                                --------->ZAT6                             ------->GAMYB                            <---------MYB52(2)                            <---------MYB46(2)                            <---------MYB111(1)                            --------->MYB46(3)                            <---------MYB111(2)                            <------------MYB.PH3(2)                       --------->CCA1(2)             ----------->ARR10                       =========================HOX2a_HOX2a                      <---------ARR14(2)         ----------->GT1                      <---------ARR11(3)        <---------TOE2(2)                      --------->AGP1--------->At4g35610                      --------->ARR14(2)        <---------TOE1(2)             <---------ANAC58      --------->TOE2(3)<------ZmHOX2a(2)       <-----------RAV1(2)            <---------ANAC58 ----->GLK1(1)     --------->HSFB2a(2)    <---------CCA1(2)      --------->HSFB2a(2)            ----- ---->ARR11(3)     <---------HSFB2a(2)   ------>ZmHOX2a(1)       <---------HSFB2a(2) ---------->DOF2   tttcgaaaccctagtcgatttcgagatccaactaactctgctccttatctcaggtaaaattctcgctcgagaactcaattgcttatccaaagttccaact  3567300                                                       --------->HSFB2a(1)                                                       --------->HSFC1(2)                                                    --------->LBD16                           <---------TOE1(3)       --------->LBD16<---------ZAT2                     <---------TOE2(2)             --------->ANAC46                ------->TEIL        <---------ARR14(2) <---------HSFB2a(1)               <---------GLK1(2)    --------->ARR14(2) <---------HSFC1(2)     <----------DOF2 <---------TOE1(2)             --------->ANAC58    <---------ANAC58 <---------TOE1(3)             --------->ANAC58    <---------ANAC58 <---------TOE2(3)    <---------GLK1(2)       <---------At4g35610         ------- -->GAMYB ------>ZmHOX2a(1)<---------TOE2(3)    -------->P     <---------At4g35610            -------   gaagatgctttcctactgaatcttaggttaatgttttggatttggaatcttacccgaaatttctctgcagcttgttgaatttgcgaagtatgggagacgc  3567400                                                                  <---------HSFB2a(2)                                                                  --------->HSFB2a(2)                         --------->ARR11(3)                       <---------HSFC1(1)                        <---------GLK1(1)                        <---------LBD16          -----------                        --------->GLK1(1)                      --------->GLK1(2)        --------->ZAT2                    --------->ALFIN1                          --------->ARR14(2)        --------->At4g35610                   <------ZmHOX2a(1)                          <---------ARR14(2)        <---------ZAT2               <---------TOE1(1)                              <---------GLK1(2)        --------->GLK1(2)               <---------TOE2(1)                            <---------TOE1(2)     ------->GAMYB     <---------------------WRI1                       --------->HSFB2a(1)      --------->MYB52(1)----    --------->MYB52(1)<------ZmHOX2a(1)               --------->HSFC1(2)       <---------DOF5.7(2) -->ANAC58  --------->TOE1(2)                         <---------HSFB2a(1)    --------->DOF5.7(2)----- -->ANAC58  --------->TOE2(2)            >>>>>>>>>TBF1<---------HSFC1(2) ---------->DOF2<---------At4g35610   tagagacaacgaagcctacgaggaggagctcttggactatgaagaagaagacgagaaggtcccagattctggaaacaaagttaacggcgaagctgtgaaa  3567500         <---------TOE2(3)                              ---------->ID1         <---------TOE1(3)                      <---------AHL20(2) >GT1<----------DOF2                            --------->AHL20(2) ----->DAG2                 <---------ANAC46 ----------->GT1                                        < ----->DOF2      ------>ZmHOX2a(1)        <---------ANAC46 <---------GLK1(2)                        -   aagtgagttttatggtttcctcgatatgtttcatgtatactactgtgtgtttaaatttgtcgattcttagattactacttgataacaagtagcagtatgt  3567600                                                                --------->MYB46(3)                                                                <---------MYB55(2)                                                                ----------------->AGL3                                                               --------->ANAC46   <---------TOE1(2)                                                               --------->ANAC58  <---------ANAC46                                                               --------->ANAC58<---------ANAC46                                                              ------>MYB46(1)  <---------ANAC58          <---------ANAC58                     <---------YAB1 ------>MYB83     <---------ANAC58          <---------ANAC58        <---------ARR11(3)         <---------ALFIN1  <---------O2    <---------AHL20(2)            --------->ARR11(3)  ------>ZmHOX2a(1)        ====================== ---------AHL20(2)    <---------YAB1   <---------ICU4 --------->LBD16        <-----------HVH21 -------->AHL20(2)  <-----------GT1    --------->ATHB12     --------->MYB46(3) <---------TGA1a   gtttaattagttgcttaacatataacaattgactgagttcttcattgctataattcctgaaacccacccaatattagactgtcgtgtgtttctcatattg  3567700  Previous    Next  AGI:  At5g11200.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 56 (RH56) [Arabidopsis Thaliana] (GB:Q9LFN6;GB:Q93VJ8); similar to DEAD/DEAH box helicase, putative (RH15) [Arabidopsis thaliana] (TAIR:AT5G11170.2); similar to DEAD/DEAH box helicase, putative (RH15) [Arabidopsis thaliana] (TAIR:AT5G11170.1); similar to unknown [Populus trichocarpa] (GB:ABK93079.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ53423.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ64969.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains Int Range:  from: 3567175    to: 3571016    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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