Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->MYB52(1)                                                                        <---------MYB52(2)                                                                     ---------->DOF2                                                                 <---------ANAC58                                                                 <---------ANAC58                 <--                                                           <---------ARR14(2)                     <--                                ----------->GT1            --------->ARR14(2)              --------->CCA1(2)                             --------->TOE1(2)          --------------->AGL15             <---------SPL7                            ------>ZmHOX2a(2)           <---------------AGL15             --------->TOE1(2)                        --------->ETT(2)               ----------------->AGL2            <---------HSFB2a(1)                --------->ARR14(2)                     <-----------------AGL3            --------->HSFB2a(1)                <---------ARR14(2)                     <-----------------AGL2--------->TOE1(3)    <--            <-----------------AGL2                     <-----------------AGL1--------->TOE2(3)    <--            ============================================================MADS_MADS        --------->HSFC1(2)            <-----------------AGL3                     <-----------------AG<---------TOE2(3)<-------TEIL ----AHL20(2)----------------->AGL1           ---------->DOF2    <---------ANAC46        <---------HSFC1(2)   aactcaggcatgagtccctatatgggtcgatcgtgggaaaaaaaaaaaaaaagagagtccctatatggcatgaaagtaacgttagaaacgaaggtacgag  3564600                                                                           --------->ANAC55(2)                                                                           <---------bZIP60(1)                                                                           --------->bZIP60(1)                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                           <---------ANAC55(2)                                                                         <-----------GT1                                                              ----------------------->TaNAC69(2)                                                             --------->ARR11(3)                                                             <---------ARR11(3)     <---------ZAT14            <------ZmHOX2a(1)           --------->GLK1(1)                       - -------ANAC46           --------->DAG2                     <---------GLK1(1)             <---------ANAC58 -------O2              ---------->DOF2                    --------->ARR11(3)             <---------ANAC58 -------ANAC58      <---------YAB1         --------->YAB1  <---------ARR11(3)             <---------ANAC46 -------ANAC58<-------TEIL    <---------TOE2(3)   ---------->DOF2    <---------TOE2(3) <---------TOE2(3)   tcgtgtcttcactagattcattctaataaagtaaggaagttgtattcataaataaagaatagatatctattgatgttacgtccctcactaaggcttgtga  3564700                                --------->O2                    --------->YAB1                    --------->TOE2(3)                  --------->ARR11(3)                  --------->AHL20(1)                  <---------ARR11(3)                 <------ZmHOX2a(2)                 --------->CCA1(1)                  --------->ARR11(3)          <---------PCF2       ------>MYB46(1)      <---------ARR11(3)          --------->At4g35610  ------>MYB83  --------->AHL20(2)          <-----------GT1        --------->ZAT18   <-----------GT1    <-----------TBP       ------------>CBF        <---------ZAT18<---------ICU4        <---------AHL20(2)  ----------->GT1 --------->DOF2  --------->RVE1(1)         <-----------TBP    ---------->DOF2   ---------->DOF2   ---   gacaaagtagtgggctcaaatatcttaattaccaacgtgaatcgaatttatatagatcatcgaagaaaggtcaatttacaaacaaagagaaacttcaaat  3564800                                ----------->RAV1(1)                               --------->MYB46(3)                   <-------GAMYB=======================RAV                  --------->MYB111(1)                  --------->MYB52(2)                  --------->MYB46(2)                  --------->MYB111(2)                  <---------MYB46(3)                <---------MYB52(1)         <---------AHL20(2)   ------->TEIL         --------->AHL20(2)--------->ANAC58                                         <---------WOX13(1)         ----------->TBP   --------->ANAC58<-----------RAV1(2)                     <------------CBF       ----------->TBP  <----------ID1    <------ZmHOX2a(2)       <----------DOF2<---------YAB1 <---- ------->DOF2  ------------>MYB.PH3(2)  <------ZmHOX2a(1)     <---------CCA1(2)<---------At4g35610   taaggccctatataaatagttagttggggacgaaccacagtaggatcagggactatatcagtctctatctttctctctctcttctgattgtccgagttgt  3564900                                                                                               ------                                                                                              <------                                                                                              <------                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                          --------->HSFC1(2)                                                                                          <---------HSFC1(2)                                                                                         --------->HSFB2a(1)                                                                                         <---------HSFB2a(1)                                                                                       <------ZmHOX2a(1)                                                                                    <---------LBD16                                                                                    --------->HSFB2a(2)                                                                               <---------HSFB2a(1)                                                                              <-------TEIL<---------HSFB2a(1)                                                                           ----------->GT1--------->HSFB2a(1) --------->At4g35610       --------->TOE1(3)                              <---------------AtSPL8    < <---------At4g35610       --------->TOE2(3)                             <---------------------WRI1-- -----ANAC46          ---------->DOF2    --------->YAB1              ---------->DOF2<---------HSFB2a(2)   gtctgctaagaagagagagaaacttaaaaccctaaatttcaaatcagaaaatatagagtttgaaggaaactaaaagatggtacattcgaggaagttccga  3565000         ----------->HVH21        --------->At4g35610        <------NtERF2       ------>NtERF2       <---------ATERF1(1)      --------->DEAR3(1)    <------NtERF2                    --------->ARR14(1)    ------>NtERF2                    --------->CCA1(2)   --------->ANAC58                 --------->ARR11(1)   --------->ANAC58                 <---------GLK1(2)   --------->ANAC46                 --------->ARR14(2)  --------->ZAT18                   <---------ARR14(2)                                          <----  --------->SPL7            <---------GLK1(1)                                         =============== --------->ATERF1(1)      <---------ANAC58     ------>ZmHOX2a(1)                      =============== --->LBD16                <---------ANAC58--------->DEAR3(1)                          ------>ZmHOX2a(2) ---TOE1(1)           <---------ANAC58 --------->ANAC58      <---------WOX13(1)      --------->GLK1(1) ---ANAC46----------->RAV1(1)     ----------->ARR10        --------->ATHB12         <---------ARR11(3) -----------HVH21     <---------ANAC58 --------->ANAC58   <---------AHL20(2)        --------->ARR11(3) ------->ALFIN1     <---------ARR14(2)<-------TEIL  --------->YAB1         <-------TEIL        <-----   ggtgtccgccagcgacaatggggttcttgggtctctgagattcgccatcctctattgtaagtaattggctctctatatacatatatgatctccattgttt  3565100                   <---------ANAC55(2)     <----------DOF2                   --------->ANAC55(2)    <---------ANAC58              <------ZmHOX2a(1)<-----------RAV1(1)       ------>ZmHOX2a(1)--------->AHL20(2)<---------ANAC58        <----------DOF2 -------GT1  <---------YAB1 <---------AHL20(2)                   --------->YAB1 =============HOX2a_HOX2a<---------AHL20(2)<---------DAG2      --------->ARR11(3) ====================HOX2a_HOX2a  <---------REM1(1)      <---------At4g35610   <---------AHL20(1) ----ZAT14  <---------TOE2(3) <---------TOE2(3)         ------->TEIL     <----------DOF2      <------   actgttttcctgcttaggattacatattatataatgttgtagttgcttttctcatatgaagctactatctttattctttagtatatttcatcaaaacttt  3565200                                                                           --------->MYB46(3)                                                                           <---------ATHB12                                                                          -------->P                                                                          ------>MYB46(1)                                                             ---------->DOF2                                                           <---------AHL20(2)  <<<<<<<<<<ABI3                                                           --------->AHL20(2)  <<<<<<<<<<FUS3                                                   ---------->DOF2        ------>MYB83  <---------ATHB12                                                  <---------AHL20(2)    --------->AtMYB61 ---------->DOF2              --------->MYB52(1)             --------->AHL20(1)        --------->MYB46(3)--------->YAB1        --------->AHL20(2)   <---------ANAC58<---------AHL20(1)      <-----------GT1 <---------------AGL15        <---------AHL20(2)   <---------ANAC58--------->AHL20(2) ----------->GT1>>>>>>>>>>FUS3 ----DOF2   <---------MYB52(2)               <---------ARR11(3)----------->GT1--------->AtLEC2   atttgtatattaaaacaaacgctctactattgcttaacaatctacaaaatattaaaaggaattaaaagttaaaaccaaccatgcatgctaatcaaagtta  3565300                                        ----------->GT1                       <---------GLK1(1)                                 <---------YAB1 <---------AHL20(2)  <--------P--------->GLK1(1) <----                        <---------GLK1(2)      --------->AHL20(2)<---------TOE2(3) <---------At4g35610                <---------At4g35610 <---------YAB1    ----------->GT1 --------->MYB52(2)   --------->TOE2(3)         <---------GLK1(2)  <----------DOF2    <---------AHL20(2)<---------TOE1(3) --------->At4g35610   agttatcgactgattttcatctacttgattctttgattatttttgtaaattaaatgtggtaatttctaaggttagtttggatttcagctcaaaacttaat  3565400                                                                                          <---------YAB1                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(1)                                                                                         <---------AHL20(1)                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                      <---------ANAC46                  --------->YAB1        <---------ANAC58                             <---------TOE2(3)         --------->TOE1(3)        <---------ANAC58                             <---------TOE1(3)         --------->TOE2(3)        <---------ANAC46       --------->ICU4 <----------DOF2                  ----------->GT1  --------->ICU4              <---------AHL20(2)    <-----------GT1           ----------->GT1 -----WOX13(1)   ----------->GT1<---------ICU4------>ZmHOX2a(1)    <---------YAB1    <---------ICU4   tgaaatgtttacttggattttgtaactaatataaaaattactaaaatccttttttaacgtgaatgttatatgataccaaaacgttaaaaattatatttca  3565500  Previous    Next  AGI:  At5g11190.1    Description:  SHN3 (SHINE3); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor SHINE 2 (SHN2) [Arabidopsis Thaliana] (GB:Q9LFN7); similar to SHN2 (SHINE2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G25390.2); similar to unknown [Populus trichocarpa] (GB:ABK95171.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 3564977    to: 3566052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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